Cla008252 (gene) Watermelon (97103) v1

Overview
NameCla008252
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionWUSCHEL-related homeobox-containing protein 4 (AHRD V1 *-*- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox
LocationChr3 : 1542265 .. 1543627 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGCGGCGGTCCTCCGGTGAGTTCACGGTGGAACCCGACAAAAGAGCAAATAAGCATATTGGAGAATTTGTACAGACAAGGAGTGAGAACGCCGAGTGCTGACCAAATACAACAGATAACGAGTAGGCTTAAGGCTTATGGTCATATTGAAGGCAAAAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGGCAAAGGCAGAAGCAGAAACAACATTCCACTTTCCCTTTATTTAATCACTTTCTTCACTTCAATCCCAACTCTCCTTTCCCTCCTCCGAGTGGTTCGTATCGTAATACTCTAGTAATACATACTATTTGTCAGTTCAATTATACTATTTTCTTTTTAATGAAAAATATTCAAATCTCTTATTTTTATTTTTGCTTGGAACCTTCACTTCCATCTCAAAATCTACATCTCTCAAATTAAGTGATAAGTTTGTTAGGAAATTAGATTCTTCCTACCAAAGTGAGTATAACTTGATTGGCATGCAAGTATTCTAGAAATTACAAGATCTGTGTTCATCCTTGACCCATTAGGTTAATTTTGTTTGGTCTAATTCTAATTTTCAGATTCAAAGATCATCATGTTGCATAAATTGATTAGTTTAGGTGTTGTTTGATAATTATTTGGTTTTTAAAAAATTTATATTTATTTTCTTCTTTATTTGAATTCTCAGTAAAATTTCAAACACAATACCAAGTTTTTTTTTTTTTTTTAAATTTTTCAAAATTTGGTATGAATTTTGAAAATATGATTAGAAAGTTACAGGGTAGATAAGCATAAATTAAAAAAAAAAAAAGCTGAAAATCAAATGATTATTGAATGATAGAATAATGTAATGTTATTTGTTGATGGTAATCACTAAGCCTATATAGTGCTTAAATGAAATGAAGTTTACTCCTTATTGATTATCTTAAGCATTTTTTTTTTTTTGTACAATTGCAATGGAATTATTTATTGATATTAAATTTTCATGTTTTGTTCATTATTGTGATGATCAGTGGTTTGCAGCCCATACTACGTACATCAAAACGACGTCGGATTGTATCAACAGTACCAAAACAATTCGATGGTGATTCAAACCGGTGGGATTGTGAAGAGAAGATCAAAGAGTGAGAGAAGAAATTGTAATAATAACAATAATATTAATATTAATGAGGAATCCGCCATTAATAATAACCTTAGCTTTCAAAGTACAGAAACTCTCCCTCTCTTTCCCACGCACCCAACTGGGGATTTACAAGCCGGGCTTGCGTCACCGTCGCAGCCGATGGCGCCCGGTTCGGCCTCTTCTGGAAACTCTGCTGACGATTCTGCAGGCGGCCGTCGACCTTACTTTGAATTTTTTATGTAG

mRNA sequence

ATGGGCGGCGGCGGTCCTCCGGTGAGTTCACGGTGGAACCCGACAAAAGAGCAAATAAGCATATTGGAGAATTTGTACAGACAAGGAGTGAGAACGCCGAGTGCTGACCAAATACAACAGATAACGAGTAGGCTTAAGGCTTATGGTCATATTGAAGGCAAAAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGGCAAAGGCAGAAGCAGAAACAACATTCCACTTTCCCTTTATTTAATCACTTTCTTCACTTCAATCCCAACTCTCCTTTCCCTCCTCCGAGTGTGGTTTGCAGCCCATACTACGTACATCAAAACGACGTCGGATTGTATCAACAGTACCAAAACAATTCGATGGTGATTCAAACCGGTGGGATTGTGAAGAGAAGATCAAAGAGTGAGAGAAGAAATTGTAATAATAACAATAATATTAATATTAATGAGGAATCCGCCATTAATAATAACCTTAGCTTTCAAAGTACAGAAACTCTCCCTCTCTTTCCCACGCACCCAACTGGGGATTTACAAGCCGGGCTTGCGTCACCGTCGCAGCCGATGGCGCCCGGTTCGGCCTCTTCTGGAAACTCTGCTGACGATTCTGCAGGCGGCCGTCGACCTTACTTTGAATTTTTTATGTAG

Coding sequence (CDS)

ATGGGCGGCGGCGGTCCTCCGGTGAGTTCACGGTGGAACCCGACAAAAGAGCAAATAAGCATATTGGAGAATTTGTACAGACAAGGAGTGAGAACGCCGAGTGCTGACCAAATACAACAGATAACGAGTAGGCTTAAGGCTTATGGTCATATTGAAGGCAAAAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGGCAAAGGCAGAAGCAGAAACAACATTCCACTTTCCCTTTATTTAATCACTTTCTTCACTTCAATCCCAACTCTCCTTTCCCTCCTCCGAGTGTGGTTTGCAGCCCATACTACGTACATCAAAACGACGTCGGATTGTATCAACAGTACCAAAACAATTCGATGGTGATTCAAACCGGTGGGATTGTGAAGAGAAGATCAAAGAGTGAGAGAAGAAATTGTAATAATAACAATAATATTAATATTAATGAGGAATCCGCCATTAATAATAACCTTAGCTTTCAAAGTACAGAAACTCTCCCTCTCTTTCCCACGCACCCAACTGGGGATTTACAAGCCGGGCTTGCGTCACCGTCGCAGCCGATGGCGCCCGGTTCGGCCTCTTCTGGAAACTCTGCTGACGATTCTGCAGGCGGCCGTCGACCTTACTTTGAATTTTTTATGTAG

Protein sequence

MGGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPSVVCSPYYVHQNDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAINNNLSFQSTETLPLFPTHPTGDLQAGLASPSQPMAPGSASSGNSADDSAGGRRPYFEFFM
Homology
[Close]
BLAST of Cla008252 vs. Swiss-Prot
Match: WOX2_ARATH (WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana GN=WOX2 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.0e-40
Identity = 107/240 (44.58%), Postives = 139/240 (57.92%), Query Frame = 1 

Query: 5   GPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHK 64
           G   SSRWNPTK+QI++LENLY++G+RTPSADQIQQIT RL+AYGHIEGKNVFYWFQNHK
Sbjct: 8   GTASSSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHK 67

Query: 65  ARQRQKQKQHSTFPLFNHFLHFNPNSPFPPP--SVVC-SPYYVHQ-NDVGLYQQ---YQN 124
           ARQRQKQKQ      FN  LH      +PPP  +V C SPYY+ Q +D  + Q    Y N
Sbjct: 68  ARQRQKQKQ-ERMAYFNRLLHKTSRFFYPPPCSNVGCVSPYYLQQASDHHMNQHGSVYTN 127

Query: 125 -----NSMVIQTGGIVKR------------RSKSERRNCNNNNNININEESAINN----- 184
                N+++I +GG  KR            R+ +  R   + +++  +  +  +N     
Sbjct: 128 DLLHRNNVMIPSGGYEKRTVTQHQKQLSDIRTTAATRMPISPSSLRFDRFALRDNCYAGE 187

Query: 185 --NLSFQSTETLPLFPTHPTGDLQA-GLASPSQPMAPGSASSGNSADDSAGGRRPYFEFF 213
             N++    +TLPLFP  P     A G+ S S   A GS S  + + D AG  +P+ +FF
Sbjct: 188 DINVNSSGRKTLPLFPLQPLNASNADGMGSSS--FALGSDSPVDCSSDGAGREQPFIDFF 244

[Close]
BLAST of Cla008252 vs. Swiss-Prot
Match: WOX5_ORYSJ (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica GN=WOX5 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.7e-27
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1 

Query: 9   SSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKARQR 68
           ++RW PTKEQI++LE LYRQG+RTP+A+QIQQIT+RL+ +GHIEGKNVFYWFQNHKARQR
Sbjct: 42  NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQR 101

Query: 69  QKQKQHSTFPLFNHFLHFNPNSPFPPP 96
           QKQKQ S       F +F+     PPP
Sbjct: 102 QKQKQQS-------FDYFSKLFRRPPP 121

[Close]
BLAST of Cla008252 vs. Swiss-Prot
Match: WOX5_ORYSI (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica GN=WOX5 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.7e-27
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1 

Query: 9   SSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKARQR 68
           ++RW PTKEQI++LE LYRQG+RTP+A+QIQQIT+RL+ +GHIEGKNVFYWFQNHKARQR
Sbjct: 42  NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQR 101

Query: 69  QKQKQHSTFPLFNHFLHFNPNSPFPPP 96
           QKQKQ S       F +F+     PPP
Sbjct: 102 QKQKQQS-------FDYFSKLFRRPPP 121

[Close]
BLAST of Cla008252 vs. Swiss-Prot
Match: WOX4_ARATH (WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana GN=WOX4 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 72/180 (40.00%), Postives = 94/180 (52.22%), Query Frame = 1 

Query: 7   PVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKAR 66
           P  +RWNPT+EQI ILE LY+ G+RTP+A QI+ IT +L  YG IEGKNVFYWFQNHKAR
Sbjct: 86  PGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKAR 145

Query: 67  QRQKQKQHSTFPLFNHFLHFNPNSPFPPPSVVCSPYYVHQNDVGLYQQYQNNSMVIQTGG 126
           +RQKQK+       N+ +  +  S F    V         N     +   ++S+ I    
Sbjct: 146 ERQKQKR-------NNLISLSCQSSFTTTGVF--------NPSVTMKTRTSSSLDIMREP 205

Query: 127 IVKRRSKSE----RRNCNNNNNININEESAINNNLSFQSTE--------TLPLFPTHPTG 175
           +V++    E    +R C +    N+  E+  N N S  +T         TL LFP HP G
Sbjct: 206 MVEKEELVEENEYKRTCRSWGFENLEIENRRNKNSSTMATTFNKIIDNVTLELFPLHPEG 250

[Close]
BLAST of Cla008252 vs. Swiss-Prot
Match: WOX1_ARATH (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-24
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1 

Query: 6   PPV--SSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 65
           PPV  SSRWNPT +Q+ +LE LYRQG RTPSAD IQQIT++L+ YG IEGKNVFYWFQNH
Sbjct: 69  PPVMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNH 128

Query: 66  KARQRQKQKQ 74
           KAR+RQK+++
Sbjct: 129 KARERQKRRR 138

[Close]
BLAST of Cla008252 vs. TrEMBL
Match: A0A0A0LVA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G505930 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 7.3e-90
Identity = 178/229 (77.73%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 2   GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQ 61
           GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQIT RLK YGHIEGKNVFYWFQ
Sbjct: 15  GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITVRLKDYGHIEGKNVFYWFQ 74

Query: 62  NHKARQRQKQKQ-------HSTFPLFNHFLHFN-PNSPFPPP-------SVVCSPYYVHQ 121
           NHKARQRQKQKQ       +S+FP FNHFLHFN  NSPFPPP       +VVCSPYYVHQ
Sbjct: 75  NHKARQRQKQKQQHHHHHFNSSFPFFNHFLHFNHNNSPFPPPPPPPPPNNVVCSPYYVHQ 134

Query: 122 NDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAIN-NNLSFQSTETL 181
           NDVGLY QYQNNSMVIQ+GGI  +RSKSERRNC     ININEES IN NNLS+Q+TETL
Sbjct: 135 NDVGLYPQYQNNSMVIQSGGIETKRSKSERRNC----IININEESTINDNNLSYQTTETL 194

Query: 182 PLFPTHPTGDLQAGLASPSQP-MAPGSASSGNSADDSAGGRRPYFEFFM 214
            LFPTHPTGDLQA   SP  P M P SAS   S DDSA GR+PYFEFFM
Sbjct: 195 SLFPTHPTGDLQASPQSPPPPSMVPTSASDEISVDDSAHGRQPYFEFFM 239

[Close]
BLAST of Cla008252 vs. TrEMBL
Match: K4C9W1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.7e-49
Identity = 116/213 (54.46%), Postives = 135/213 (63.38%), Query Frame = 1 

Query: 4   GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 63
           GG PV  RWNPTKEQI +LE+LY+QG+RTPSADQIQQIT RL+A+GHIEGKNVFYWFQNH
Sbjct: 12  GGSPVGCRWNPTKEQIDLLESLYKQGIRTPSADQIQQITGRLRAFGHIEGKNVFYWFQNH 71

Query: 64  KARQRQKQKQHSTFPLFNHFLHFNPNSPFPPPS------VVCSPYYVHQNDVGLYQQYQN 123
           KARQRQKQKQ   F  +N FLH    S FPPP+      VVCSPYY  QN++G YQQY  
Sbjct: 72  KARQRQKQKQ-DKFAYYNRFLH--RTSVFPPPNCPNGFVVVCSPYYTAQNNLGFYQQYPA 131

Query: 124 -NSMVIQTGGIVKRRSKSERRN---CNNNNNININEESAINNNLSFQSTETLPLFPTHPT 183
             SM+I   G  KRR+   +     C  NN+ N N+E        F + ETL LFP HPT
Sbjct: 132 VPSMIIPGPGGFKRRATCNQETLNLCEQNNSPNANKE--------FITQETLNLFPLHPT 191

Query: 184 GDLQ-----AGLASPSQPMAPGSASSGNSADDS 202
           G LQ     A  +S S    P    S N+  +S
Sbjct: 192 GVLQEKTTIADSSSSSSTCVPRDHLSSNTTSNS 213

[Close]
BLAST of Cla008252 vs. TrEMBL
Match: M1CZ36_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030316 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-48
Identity = 109/178 (61.24%), Postives = 127/178 (71.35%), Query Frame = 1 

Query: 4   GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 63
           GG PV  RWNPTKEQI +LE+LY+QG+RTPSA+QIQQIT RL+A+GHIEGKNVFYWFQNH
Sbjct: 14  GGTPVGCRWNPTKEQIDLLESLYKQGIRTPSAEQIQQITGRLRAFGHIEGKNVFYWFQNH 73

Query: 64  KARQRQKQKQHSTFPLFNHFLHFNPNSPFPP---PSVVCSPYYVHQNDVGLYQQYQNNSM 123
           KARQRQKQKQ   F  +N FLH    S FPP   P+VVCSPYY  QN++G YQQY   SM
Sbjct: 74  KARQRQKQKQ-DKFAYYNRFLH--RTSVFPPPNCPNVVCSPYYTAQNNLGFYQQYP--SM 133

Query: 124 VIQTGGIVKRRSKSERRNCNNNNNININEESAINN-NLSFQSTETLPLFPTHPTGDLQ 178
           +I   G  KRR+      C N   +N+ E++ I N N  F + ETL LFP HPTG LQ
Sbjct: 134 IIPGPGGFKRRA-----TC-NQETLNLCEQNNITNANKEFINQETLNLFPLHPTGVLQ 180

[Close]
BLAST of Cla008252 vs. TrEMBL
Match: C0IN08_PETHY (WOX2 OS=Petunia hybrida GN=WOX2 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 108/216 (50.00%), Postives = 133/216 (61.57%), Query Frame = 1 

Query: 1   MGGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWF 60
           +  GG P  SRWNPTKEQI +LE+LYRQG+RTPSA+QIQQIT RL+A+GHIEGKNVFYWF
Sbjct: 9   LSSGGTPTGSRWNPTKEQIDLLESLYRQGIRTPSAEQIQQITGRLRAFGHIEGKNVFYWF 68

Query: 61  QNHKARQRQKQKQHSTFPLFNH-FLHFNPNSPFPP-PSVVCSPYYVHQNDVGLY--QQYQ 120
           QNHKARQRQKQKQ  +   FN  FL   P + FPP P+VVCSPYY  Q  +G Y  QQY 
Sbjct: 69  QNHKARQRQKQKQDMSLAYFNRAFLRRTP-ADFPPCPNVVCSPYYKPQTGLGFYHQQQYP 128

Query: 121 NNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAINN-------------NLSFQSTE 180
             + +I  G +   +  S ++      N+ +   SA NN             N+   + E
Sbjct: 129 IPTTLIHPGLVEGPKGISRQKMIPAACNVIVYNNSAANNYEGNNGMMHDPCSNVKLFNQE 188

Query: 181 TLPLFPTHPTGDLQAGLASPSQPMAPGSASSGNSAD 200
           TL LFP HPTG LQ    + S P +  S S+ NS +
Sbjct: 189 TLNLFPLHPTGVLQEKTTTASSPSSASSTSTSNSLE 223

[Close]
BLAST of Cla008252 vs. TrEMBL
Match: V4SLT2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029815mg PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.5e-45
Identity = 111/230 (48.26%), Postives = 145/230 (63.04%), Query Frame = 1 

Query: 2   GGGGPPVSS--RWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYW 61
           GGGG  +SS  RWNPTKEQI++LE+LY QG+RTPSA+QIQQIT+RL+AYGHIEGKNVFYW
Sbjct: 19  GGGGTTLSSSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYW 78

Query: 62  FQNHKARQRQKQKQHSTFPLFNHFLHFNPNSPFP--PPS--VVCSPYYVHQNDVGLYQQY 121
           FQNHKARQRQKQKQ  T    N +LH + + P P  PPS  VVC PYY+ +ND+G Y Q 
Sbjct: 79  FQNHKARQRQKQKQERT-AFINRYLHKSAHQPAPLFPPSTNVVCGPYYLPRNDLGFYPQC 138

Query: 122 QNNSMVIQTGGIVKRRSKSERRNCNNNNNI-----------NINEESAINNNLSFQSTET 181
              + V+  GG  K R+K+++      + +           N+   ++  NN    + ET
Sbjct: 139 ---TKVLIPGG-SKMRAKTDQEMDKTTSYVGAGYDPEQPECNVMMHTSNINNSDISNQET 198

Query: 182 LPLFPTHPTGDLQAGLASPSQPMAPGSA--SSGNSADDSAGGRRPYFEFF 213
           LPLFP HPTG LQA     +  M P ++  +S     +     +P+F+FF
Sbjct: 199 LPLFPLHPTGILQA----KTNAMLPSNSLENSITPCIEKDPADQPFFDFF 239

[Close]
BLAST of Cla008252 vs. NCBI nr
Match: gi|778665197|ref|XP_004150189.2| (PREDICTED: WUSCHEL-related homeobox 2 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 1.0e-89
Identity = 178/229 (77.73%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 2   GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQ 61
           GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQIT RLK YGHIEGKNVFYWFQ
Sbjct: 15  GGGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITVRLKDYGHIEGKNVFYWFQ 74

Query: 62  NHKARQRQKQKQ-------HSTFPLFNHFLHFN-PNSPFPPP-------SVVCSPYYVHQ 121
           NHKARQRQKQKQ       +S+FP FNHFLHFN  NSPFPPP       +VVCSPYYVHQ
Sbjct: 75  NHKARQRQKQKQQHHHHHFNSSFPFFNHFLHFNHNNSPFPPPPPPPPPNNVVCSPYYVHQ 134

Query: 122 NDVGLYQQYQNNSMVIQTGGIVKRRSKSERRNCNNNNNININEESAIN-NNLSFQSTETL 181
           NDVGLY QYQNNSMVIQ+GGI  +RSKSERRNC     ININEES IN NNLS+Q+TETL
Sbjct: 135 NDVGLYPQYQNNSMVIQSGGIETKRSKSERRNC----IININEESTINDNNLSYQTTETL 194

Query: 182 PLFPTHPTGDLQAGLASPSQP-MAPGSASSGNSADDSAGGRRPYFEFFM 214
            LFPTHPTGDLQA   SP  P M P SAS   S DDSA GR+PYFEFFM
Sbjct: 195 SLFPTHPTGDLQASPQSPPPPSMVPTSASDEISVDDSAHGRQPYFEFFM 239

[Close]
BLAST of Cla008252 vs. NCBI nr
Match: gi|723707202|ref|XP_004242075.2| (PREDICTED: WUSCHEL-related homeobox 2 [Solanum lycopersicum])

HSP 1 Score: 204.1 bits (518), Expect = 2.4e-49
Identity = 116/210 (55.24%), Postives = 135/210 (64.29%), Query Frame = 1 

Query: 4   GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 63
           GG PV  RWNPTKEQI +LE+LY+QG+RTPSADQIQQIT RL+A+GHIEGKNVFYWFQNH
Sbjct: 5   GGSPVGCRWNPTKEQIDLLESLYKQGIRTPSADQIQQITGRLRAFGHIEGKNVFYWFQNH 64

Query: 64  KARQRQKQKQHSTFPLFNHFLHFNPNSPFPP---PSVVCSPYYVHQNDVGLYQQYQN-NS 123
           KARQRQKQKQ   F  +N FLH    S FPP   P+VVCSPYY  QN++G YQQY    S
Sbjct: 65  KARQRQKQKQ-DKFAYYNRFLH--RTSVFPPPNCPNVVCSPYYTAQNNLGFYQQYPAVPS 124

Query: 124 MVIQTGGIVKRRSKSERRN---CNNNNNININEESAINNNLSFQSTETLPLFPTHPTGDL 183
           M+I   G  KRR+   +     C  NN+ N N+E        F + ETL LFP HPTG L
Sbjct: 125 MIIPGPGGFKRRATCNQETLNLCEQNNSPNANKE--------FITQETLNLFPLHPTGVL 184

Query: 184 Q-----AGLASPSQPMAPGSASSGNSADDS 202
           Q     A  +S S    P    S N+  +S
Sbjct: 185 QEKTTIADSSSSSSTCVPRDHLSSNTTSNS 203

[Close]
BLAST of Cla008252 vs. NCBI nr
Match: gi|698439425|ref|XP_009758504.1| (PREDICTED: WUSCHEL-related homeobox 2 [Nicotiana sylvestris])

HSP 1 Score: 202.2 bits (513), Expect = 9.0e-49
Identity = 107/192 (55.73%), Postives = 127/192 (66.15%), Query Frame = 1 

Query: 7   PVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNHKAR 66
           PV SRWNPTKEQI +LE++YRQG+RTPSA+QIQQIT RL+A+GHIEGKNVFYWFQNHKAR
Sbjct: 16  PVGSRWNPTKEQIDLLESIYRQGIRTPSAEQIQQITLRLRAFGHIEGKNVFYWFQNHKAR 75

Query: 67  QRQKQKQHSTFPLFNHFLHFNPNSPFPPPSVVCSPYYVHQNDVGLYQQYQNNSMVIQTGG 126
           QRQKQKQ   F  FN FLH     P P P+VVCSPYY  QN++G YQQY   S+++   G
Sbjct: 76  QRQKQKQ-DKFAYFNRFLHRTNVFPPPRPNVVCSPYYTPQNNLGFYQQYPVPSLILPGPG 135

Query: 127 IVKRRSKSE----------RRNCNNNNNININEESAINNNLSFQSTETLPLFPTHPTGDL 186
             KRR+  +          + N NN  +++ NE+        F   ETL LFP HPTG L
Sbjct: 136 GFKRRATCDAAVFINATYSQENSNNMAHLSPNEK-------QFNHQETLNLFPLHPTGIL 195

Query: 187 QAGLASPSQPMA 189
           Q    S S P A
Sbjct: 196 QEKTTSSSSPSA 199

[Close]
BLAST of Cla008252 vs. NCBI nr
Match: gi|225434990|ref|XP_002281161.1| (PREDICTED: WUSCHEL-related homeobox 2 [Vitis vinifera])

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-48
Identity = 114/227 (50.22%), Postives = 141/227 (62.11%), Query Frame = 1 

Query: 3   GGGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQN 62
           GGG P SSRWNPTKEQIS+LE+LY QG+RTPSA+QIQQIT RLKAYGHIEGKNVFYWFQN
Sbjct: 7   GGGAPASSRWNPTKEQISMLESLYMQGIRTPSAEQIQQITGRLKAYGHIEGKNVFYWFQN 66

Query: 63  HKARQRQKQKQHSTFPLFNHFLH-FNPNSPFPPPSVVCSPYYVHQNDVGLYQQYQNNSMV 122
           HKARQRQKQKQ +     N +LH  +P  P P P+VVC PYYV Q+D+G Y QY     V
Sbjct: 67  HKARQRQKQKQEN-MAYVNRYLHKTSPLFPPPCPNVVCGPYYVPQSDLGFYPQYPK---V 126

Query: 123 IQTGGIVKRRSKSERRNCNNNN-----------NININEESAINNNLSFQSTETLPLFPT 182
           +  GGI +RR ++ER      +               N E  I+++    + ETL LFP 
Sbjct: 127 LLPGGI-RRRPRTERAEKTKTHGGGGAGYEMMMQAGDNNEGLIHSSSIDCNQETLALFPL 186

Query: 183 HPTGDLQAG-----LASPSQPMAPGSASSGNSADDSAGGRRPYFEFF 213
           HPTGDLQ        A  S  ++  S ++     +     +P+F+FF
Sbjct: 187 HPTGDLQRSSHAETSAENSTTLSTSSETATTPGIEDGSCDQPFFDFF 228

[Close]
BLAST of Cla008252 vs. NCBI nr
Match: gi|565368561|ref|XP_006350912.1| (PREDICTED: WUSCHEL-related homeobox 2 [Solanum tuberosum])

HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48
Identity = 109/178 (61.24%), Postives = 127/178 (71.35%), Query Frame = 1 

Query: 4   GGPPVSSRWNPTKEQISILENLYRQGVRTPSADQIQQITSRLKAYGHIEGKNVFYWFQNH 63
           GG PV  RWNPTKEQI +LE+LY+QG+RTPSA+QIQQIT RL+A+GHIEGKNVFYWFQNH
Sbjct: 14  GGTPVGCRWNPTKEQIDLLESLYKQGIRTPSAEQIQQITGRLRAFGHIEGKNVFYWFQNH 73

Query: 64  KARQRQKQKQHSTFPLFNHFLHFNPNSPFPP---PSVVCSPYYVHQNDVGLYQQYQNNSM 123
           KARQRQKQKQ   F  +N FLH    S FPP   P+VVCSPYY  QN++G YQQY   SM
Sbjct: 74  KARQRQKQKQ-DKFAYYNRFLH--RTSVFPPPNCPNVVCSPYYTAQNNLGFYQQYP--SM 133

Query: 124 VIQTGGIVKRRSKSERRNCNNNNNININEESAINN-NLSFQSTETLPLFPTHPTGDLQ 178
           +I   G  KRR+      C N   +N+ E++ I N N  F + ETL LFP HPTG LQ
Sbjct: 134 IIPGPGGFKRRA-----TC-NQETLNLCEQNNITNANKEFINQETLNLFPLHPTGVLQ 180

The following BLAST results are available for this feature:
BLAST of Cla008252 vs. Swiss-Prot
Match NameE-valueIdentityDescription
WOX2_ARATH2.0e-4044.58WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana GN=WOX2 PE=2 SV=1[more]
WOX5_ORYSJ9.7e-2766.67WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica GN=WOX5 PE=2 SV=1[more]
WOX5_ORYSI9.7e-2766.67WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica GN=WOX5 PE=3 SV=1[more]
WOX4_ARATH1.5e-2440.00WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana GN=WOX4 PE=2 SV=1[more]
WOX1_ARATH5.9e-2472.86WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2[more]
BLAST of Cla008252 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVA9_CUCSA7.3e-9077.73Uncharacterized protein OS=Cucumis sativus GN=Csa_1G505930 PE=4 SV=1[more]
K4C9W1_SOLLC3.7e-4954.46Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M1CZ36_SOLTU1.8e-4861.24Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030316 PE=4 SV=1[more]
C0IN08_PETHY1.7e-4650.00WOX2 OS=Petunia hybrida GN=WOX2 PE=2 SV=1[more]
V4SLT2_9ROSI5.5e-4548.26Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029815mg PE=4 SV=1[more]
BLAST of Cla008252 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665197|ref|XP_004150189.2|1.0e-8977.73PREDICTED: WUSCHEL-related homeobox 2 [Cucumis sativus][more]
gi|723707202|ref|XP_004242075.2|2.4e-4955.24PREDICTED: WUSCHEL-related homeobox 2 [Solanum lycopersicum][more]
gi|698439425|ref|XP_009758504.1|9.0e-4955.73PREDICTED: WUSCHEL-related homeobox 2 [Nicotiana sylvestris][more]
gi|225434990|ref|XP_002281161.1|1.2e-4850.22PREDICTED: WUSCHEL-related homeobox 2 [Vitis vinifera][more]
gi|565368561|ref|XP_006350912.1|2.6e-4861.24PREDICTED: WUSCHEL-related homeobox 2 [Solanum tuberosum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009790 embryo development
biological_process GO:0048731 system development
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0090342 regulation of cell aging
biological_process GO:0051205 protein insertion into membrane
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010207 photosystem II assembly
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0007275 multicellular organism development
biological_process GO:0048856 anatomical structure development
biological_process GO:0010865 stipule development
biological_process GO:0009908 flower development
biological_process GO:0009947 centrolateral axis specification
biological_process GO:0008283 cell proliferation
biological_process GO:0048513 animal organ development
biological_process GO:0009943 adaxial/abaxial axis specification
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008252Cla008252.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 10..69
score: 3.2
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 7..74
score: 2.
IPR001356Homeobox domainPROFILEPS50071HOMEOBOX_2coord: 5..70
score: 10
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 10..69
score: 9.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 9..76
score: 1.92
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 11..72
score: 1.1
NoneNo IPR availablePANTHERPTHR24326:SF263WUSCHEL-RELATED HOMEOBOX 4coord: 11..72
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla008252Cla97C02G046470Watermelon (97103) v2wmwmbB118
Cla008252Cla97C03G052570Watermelon (97103) v2wmwmbB124
Cla008252Csa1G505930Cucumber (Chinese Long) v2cuwmB021
Cla008252ClCG02G020520Watermelon (Charleston Gray)wcgwmB181
Cla008252ClCG03G001630Watermelon (Charleston Gray)wcgwmB223
Cla008252CSPI01G22930Wild cucumber (PI 183967)cpiwmB023
Cla008252Cucsa.379650Cucumber (Gy14) v1cgywmB684
Cla008252Cucsa.213810Cucumber (Gy14) v1cgywmB409
Cla008252CmaCh01G005920Cucurbita maxima (Rimu)cmawmB429
Cla008252CmoCh01G006160Cucurbita moschata (Rifu)cmowmB422
Cla008252Lsi02G013650Bottle gourd (USVL1VR-Ls)lsiwmB185
Cla008252Cp4.1LG02g13460Cucurbita pepo (Zucchini)cpewmB548
Cla008252CsGy1G022410Cucumber (Gy14) v2cgybwmB023
Cla008252MELO3C035340.2Melon (DHL92) v3.6.1medwmB143
Cla008252Carg12362Silver-seed gourdcarwmB0440
Cla008252CsaV3_1G034050Cucumber (Chinese Long) v3cucwmB026
Cla008252Bhi10G000514Wax gourdwgowmB365
Cla008252Bhi08G000545Wax gourdwgowmB471
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla008252Cla013275Watermelon (97103) v1wmwmB086
The following block(s) are covering this gene:
GeneOrganismBlock
Cla008252Melon (DHL92) v3.6.1medwmB091
Cla008252Melon (DHL92) v3.6.1medwmB353
Cla008252Melon (DHL92) v3.6.1medwmB551
Cla008252Silver-seed gourdcarwmB0299
Cla008252Silver-seed gourdcarwmB0323
Cla008252Silver-seed gourdcarwmB0376
Cla008252Cucumber (Chinese Long) v3cucwmB315
Cla008252Watermelon (97103) v2wmwmbB134
Cla008252Wax gourdwgowmB368
Cla008252Watermelon (97103) v1wmwmB041
Cla008252Watermelon (97103) v1wmwmB085
Cla008252Watermelon (97103) v1wmwmB090
Cla008252Cucumber (Gy14) v1cgywmB062
Cla008252Cucurbita maxima (Rimu)cmawmB185
Cla008252Cucurbita maxima (Rimu)cmawmB515
Cla008252Cucurbita maxima (Rimu)cmawmB555
Cla008252Cucurbita moschata (Rifu)cmowmB173
Cla008252Cucurbita moschata (Rifu)cmowmB547
Cla008252Melon (DHL92) v3.5.1mewmB094
Cla008252Melon (DHL92) v3.5.1mewmB146
Cla008252Melon (DHL92) v3.5.1mewmB564
Cla008252Watermelon (Charleston Gray)wcgwmB252
Cla008252Cucumber (Chinese Long) v2cuwmB303
Cla008252Cucurbita pepo (Zucchini)cpewmB507
Cla008252Cucurbita pepo (Zucchini)cpewmB281
Cla008252Cucurbita pepo (Zucchini)cpewmB694
Cla008252Cucumber (Gy14) v2cgybwmB281