Cla007915 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007915
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	ATP-binding domain-containing protein 4 (AHRD V1 *--- F1L7V2_ASCSU); contains Interpro domain(s) IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
Location	Chr11 : 9291806 .. 9293390 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGGTGGCATTGGTGAGCGGTGGCAAAGACAGTTGCTTTGCCATGATGAAATCTATTCAATATGGCCATGAGGTTCCGTTTTCTTTTCTGATTTCCCCTCTTAAATCTTCTTCTTCGTTTGTCTGGCTTACAAGATCATTGTTTATTGGCCGTTATGTCTTACTTCTTTTTCCAATTTATGTTTGTTGATTTTTTATTTCTTGTAAACTTATGCGGCTGCTTTGTTGTTTTGTTCTATGTTTGGTCTAGATTGTAGCGTTAGCTAATTTGATGCCTGCTGATGATTCTGTGGATGAGCTTGATAGTTACATGTATCAAACTGTAAGTGTTCCTGCCCTTCTCCTTATGCAAAATATTATGGATACGTTCACTTAAAATTCTGAAGTAAATGGTTGATTTGGTTTTTGACAATCAGCCATCATTGTTCTTAATCATGAAATTGGTCATTTATGTTTTAAGTTTTCAACTGTTGAACTACAACCCTGTCTAACATACTAAAATGTTCTCCGTGAAAAAAGAGACACGATTGAGTTACTTCTATTTACCTCTTCATTTTCAACATTGCAATTAAAATCATGGGTTGCTTTGGTTGGCAAAGTTGAATTTCCTTTCTTTTTCCCTTTTTTTCGCCAAGAAATTTTTATTACCACAACTTTGTGATTTAAGTTTCTTTTAAAACCCTTGTTGACCCTTCAATTACCTCACTTGAGTTACTTCTTGGATTCACTATTAATATTTTTTCTTAAAGATACTGAGTTGTAGGTGTGGCCAATCTGCTTCACGAATGACGTTATAAAGAAACTTGATAGACCCAAAATATTTGATCATCCCAATGTGTTGGGTTATTGTAATCTTCTTTGCTTTGAGATGGAACGAATCCAAACTATTATTAATTAAAAAGATATAGCCTTTTGTTATAATAAGTTTTTTCATATTTATTTTTACCTAACTCCTCACAGGAGTTTGTATCTTTCAAATGTACTTTTAAGTTTGTAACACTTAACTAATCAATGAAAGGTTTATTTCTTGATATTTTTTTTCTTATATATACCCACACAGACATTATTTTCATTTCAAACATCAATTCTTTTAGATAATTTACTCTCTGCAATTTCAAAAAGATATAAAGCCCTAAATCTTTGAGGTGAAAATTAGACGATAAATTTTAAAGCACTAAAGGTTCTATTTTTCATAAATGACTTTGTTACTCCCATCCTCTTCCACTCCATTGATAAGCTCCAACCACAAAACCATCCTTCCCACCAACAACAATCCTTAGATTCCTCCTAAGACAAGTTTTAGCCCTGGTTTTAAATGTTCTACTGCCATTGTGGCTGTGCCTTCAGATGCCGATTCATTATTTTACCTTTCCAGCCCCATCCCAACTACACATGACTCCCCTCATCCTTTTTCAATCTATGATCTCATGAAGCACATTGGTAATTTCATACCTTCACCAACAGATGAGTTTTTCAATCCAGGGCCACACTTGCATTGGCGCCATGGTTCAGAGACAACGGCCTCTGTGTTATGGCTAATACCTGTTAGGACAAAGAAAAATGAAGAACAAAAGGTGTAA

mRNA sequence

ATGAAGGTGGTGGCATTGGTGAGCGGTGGCAAAGACAGTTGCTTTGCCATGATGAAATCTATTCAATATGGCCATGAGATTGTAGCGTTAGCTAATTTGATGCCTGCTGATGATTCTGTGGATGAGCTTGATAGTTACATGTATCAAACTATTCCTCCTAAGACAAGTTTTAGCCCTGGTTTTAAATGTTCTACTGCCATTGTGGCTGTGCCTTCAGATGCCGATTCATTATTTTACCTTTCCAGCCCCATCCCAACTACACATGACTCCCCTCATCCTTTTTCAATCTATGATCTCATGAAGCACATTGGTAATTTCATACCTTCACCAACAGATGAGTTTTTCAATCCAGGGCCACACTTGCATTGGCGCCATGGTTCAGAGACAACGGCCTCTGTGTTATGGCTAATACCTGTTAGGACAAAGAAAAATGAAGAACAAAAGGTGTAA

Coding sequence (CDS)

ATGAAGGTGGTGGCATTGGTGAGCGGTGGCAAAGACAGTTGCTTTGCCATGATGAAATCTATTCAATATGGCCATGAGATTGTAGCGTTAGCTAATTTGATGCCTGCTGATGATTCTGTGGATGAGCTTGATAGTTACATGTATCAAACTATTCCTCCTAAGACAAGTTTTAGCCCTGGTTTTAAATGTTCTACTGCCATTGTGGCTGTGCCTTCAGATGCCGATTCATTATTTTACCTTTCCAGCCCCATCCCAACTACACATGACTCCCCTCATCCTTTTTCAATCTATGATCTCATGAAGCACATTGGTAATTTCATACCTTCACCAACAGATGAGTTTTTCAATCCAGGGCCACACTTGCATTGGCGCCATGGTTCAGAGACAACGGCCTCTGTGTTATGGCTAATACCTGTTAGGACAAAGAAAAATGAAGAACAAAAGGTGTAA

Protein sequence

MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTIPPKTSFSPGFKCSTAIVAVPSDADSLFYLSSPIPTTHDSPHPFSIYDLMKHIGNFIPSPTDEFFNPGPHLHWRHGSETTASVLWLIPVRTKKNEEQKV

Homology

[Close]

BLAST of Cla007915 vs. Swiss-Prot
Match: DPH6_HUMAN (Diphthine--ammonia ligase OS=Homo sapiens GN=DPH6 PE=1 SV=3)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSV--DELDSYMYQTI 52
          M+V AL+SGGKDSC+ MM+ I  GH+IVALANL PA++ V  DELDSYMYQT+
Sbjct: 1  MRVAALISGGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTV 53

[Close]

BLAST of Cla007915 vs. Swiss-Prot
Match: DPH6_BOVIN (Diphthine--ammonia ligase OS=Bos taurus GN=DPH6 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSV--DELDSYMYQTI 52
          M+V AL+SGGKDSC+ MM+ +  GH+IVALANL PA++ V  DELDSYMYQT+
Sbjct: 1  MRVAALISGGKDSCYNMMQCVAAGHQIVALANLRPAENQVGSDELDSYMYQTV 53

[Close]

BLAST of Cla007915 vs. Swiss-Prot
Match: DPH6_RAT (Diphthine--ammonia ligase OS=Rattus norvegicus GN=Dph6 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSV--DELDSYMYQTI 52
          M+V AL+SGGKDSC+ MM+ I  GH+IVALANL P D+ V  DELDSYMYQT+
Sbjct: 1  MRVAALISGGKDSCYNMMRCIAEGHQIVALANLRPDDNQVESDELDSYMYQTV 53

[Close]

BLAST of Cla007915 vs. Swiss-Prot
Match: DPH6_DANRE (Diphthine--ammonia ligase OS=Danio rerio GN=dph6 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSV-DELDSYMYQTI 52
          M+VV L+SGGKDSCF M++ +  GH IVALANL PAD +  DELDSYMYQT+
Sbjct: 1  MRVVGLISGGKDSCFNMLQCVSAGHSIVALANLRPADHAASDELDSYMYQTV 52

[Close]

BLAST of Cla007915 vs. Swiss-Prot
Match: DPH6_MOUSE (Diphthine--ammonia ligase OS=Mus musculus GN=Dph6 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSV--DELDSYMYQTI 52
          M+V AL+SGGKDSC+ MM+ I  GH+IVALANL P ++ V  DELDSYMYQT+
Sbjct: 1  MRVAALISGGKDSCYNMMQCIAEGHQIVALANLRPDENQVESDELDSYMYQTV 53

[Close]

BLAST of Cla007915 vs. TrEMBL
Match: A0A0A0LKJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075360 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTV 51

[Close]

BLAST of Cla007915 vs. TrEMBL
Match: W9S6P6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024496 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSC+AMMK IQYGHEIVALANLMPADDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCYAMMKCIQYGHEIVALANLMPADDSVDELDSYMYQTV 51

[Close]

BLAST of Cla007915 vs. TrEMBL
Match: A0A166I9H9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003547 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-18
Identity = 51/65 (78.46%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQT-----IPPKT 60
          MKVV L+SGGKDSCFAMMK +QYGHEIVALANLMPADDSVDELDSYMYQT     IP  T
Sbjct: 1  MKVVGLISGGKDSCFAMMKCVQYGHEIVALANLMPADDSVDELDSYMYQTEVKHQIPSIT 60

[Close]

BLAST of Cla007915 vs. TrEMBL
Match: F6H603_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00840 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-18
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSC+AMMK IQYGHEIVALANL+PADDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCYAMMKCIQYGHEIVALANLLPADDSVDELDSYMYQTV 51

[Close]

BLAST of Cla007915 vs. TrEMBL
Match: V7CX82_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G114900g PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-18
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSC+AMMK+IQYGHEIVALANLMP DDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCYAMMKAIQYGHEIVALANLMPLDDSVDELDSYMYQTV 51

[Close]

BLAST of Cla007915 vs. NCBI nr
Match: gi|778667915|ref|XP_004152819.2| (PREDICTED: diphthine--ammonia ligase isoform X1 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTV 51

[Close]

BLAST of Cla007915 vs. NCBI nr
Match: gi|778667919|ref|XP_011649008.1| (PREDICTED: diphthine--ammonia ligase isoform X2 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTV 51

[Close]

BLAST of Cla007915 vs. NCBI nr
Match: gi|659082420|ref|XP_008441831.1| (PREDICTED: diphthine--ammonia ligase isoform X2 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTV 51

[Close]

BLAST of Cla007915 vs. NCBI nr
Match: gi|659082418|ref|XP_008441829.1| (PREDICTED: diphthine--ammonia ligase isoform X1 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTV 51

[Close]

BLAST of Cla007915 vs. NCBI nr
Match: gi|703120952|ref|XP_010102215.1| (hypothetical protein L484_024496 [Morus notabilis])

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MKVVALVSGGKDSCFAMMKSIQYGHEIVALANLMPADDSVDELDSYMYQTI 52
          MKVVALVSGGKDSC+AMMK IQYGHEIVALANLMPADDSVDELDSYMYQT+
Sbjct: 1  MKVVALVSGGKDSCYAMMKCIQYGHEIVALANLMPADDSVDELDSYMYQTV 51

The following BLAST results are available for this feature:

BLAST of Cla007915 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DPH6_HUMAN	1.2e-12	67.92	Diphthine--ammonia ligase OS=Homo sapiens GN=DPH6 PE=1 SV=3	[more]
DPH6_BOVIN	1.6e-12	66.04	Diphthine--ammonia ligase OS=Bos taurus GN=DPH6 PE=2 SV=1	[more]
DPH6_RAT	1.6e-12	67.92	Diphthine--ammonia ligase OS=Rattus norvegicus GN=Dph6 PE=2 SV=1	[more]
DPH6_DANRE	2.1e-12	67.31	Diphthine--ammonia ligase OS=Danio rerio GN=dph6 PE=2 SV=1	[more]
DPH6_MOUSE	6.1e-12	66.04	Diphthine--ammonia ligase OS=Mus musculus GN=Dph6 PE=1 SV=1	[more]

BLAST of Cla007915 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKJ7_CUCSA	2.1e-19	98.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075360 PE=4 SV=1	[more]
W9S6P6_9ROSA	1.8e-18	94.12	Uncharacterized protein OS=Morus notabilis GN=L484_024496 PE=4 SV=1	[more]
A0A166I9H9_DAUCA	3.1e-18	78.46	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003547 PE=4 SV=1	[more]
F6H603_VITVI	4.0e-18	92.16	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00840 PE=4 SV=...	[more]
V7CX82_PHAVU	4.0e-18	92.16	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G114900g PE=4 SV=1	[more]

BLAST of Cla007915 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778667915\|ref\|XP_004152819.2\|	3.0e-19	98.04	PREDICTED: diphthine--ammonia ligase isoform X1 [Cucumis sativus]	[more]
gi\|778667919\|ref\|XP_011649008.1\|	3.0e-19	98.04	PREDICTED: diphthine--ammonia ligase isoform X2 [Cucumis sativus]	[more]
gi\|659082420\|ref\|XP_008441831.1\|	3.0e-19	98.04	PREDICTED: diphthine--ammonia ligase isoform X2 [Cucumis melo]	[more]
gi\|659082418\|ref\|XP_008441829.1\|	3.0e-19	98.04	PREDICTED: diphthine--ammonia ligase isoform X1 [Cucumis melo]	[more]
gi\|703120952\|ref\|XP_010102215.1\|	2.6e-18	94.12	hypothetical protein L484_024496 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002761	Diphthami_syn_dom
IPR014729	Rossmann-like_a/b/a_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0017183	peptidyl-diphthamide biosynthetic process from peptidyl-histidine
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0017178	diphthine-ammonia ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007915	Cla007915.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002761	Diphthamide synthase domain	PFAM	PF01902	Diphthami_syn_2	coord: 1..50 score: 6.
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	G3DSA:3.40.50.620		coord: 1..52 score: 1.8
None	No IPR available	unknown	SSF52402	Adenine nucleotide alpha hydrolases-like	coord: 1..54 score: 1.23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007915	Cla97C11G216790	Watermelon (97103) v2	wmwmbB364
Cla007915	Csa2G075360	Cucumber (Chinese Long) v2	cuwmB156
Cla007915	MELO3C008704	Melon (DHL92) v3.5.1	mewmB426
Cla007915	ClCG11G010550	Watermelon (Charleston Gray)	wcgwmB109
Cla007915	CSPI02G07350	Wild cucumber (PI 183967)	cpiwmB158
Cla007915	Cucsa.178410	Cucumber (Gy14) v1	cgywmB342
Cla007915	CmaCh12G009630	Cucurbita maxima (Rimu)	cmawmB173
Cla007915	CmoCh12G009660	Cucurbita moschata (Rifu)	cmowmB160
Cla007915	Lsi11G008830	Bottle gourd (USVL1VR-Ls)	lsiwmB110
Cla007915	CsGy2G007580	Cucumber (Gy14) v2	cgybwmB148
Cla007915	MELO3C008703.2	Melon (DHL92) v3.6.1	medwmB415
Cla007915	Carg26548	Silver-seed gourd	carwmB0715
Cla007915	Bhi06G000961	Wax gourd	wgowmB148

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007915	Cucurbita maxima (Rimu)	cmawmB767
Cla007915	Cucurbita moschata (Rifu)	cmowmB760
Cla007915	Cucurbita pepo (Zucchini)	cpewmB118
Cla007915	Cucurbita pepo (Zucchini)	cpewmB811
Cla007915	Silver-seed gourd	carwmB0155
Cla007915	Cucumber (Chinese Long) v3	cucwmB167