Cla007132 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007132
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Lipid-binding START domain-containing protein (AHRD V1 **-- F4JB32_ARATH)
Location	Chr5 : 16319307 .. 16321260 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTTGGAGTTGGTGGAGGTGGCCGCTATCAGAGGTCGCTGGAGTTGGCTGTTGACGGTGGTGGTCGGATATGGCCGAAGTTGGCCACCACTGATGGTCTCGTTGGAGTGACAACGAAGGCATTGGTGGTGATGAGGGCTAGTGCACTGTTGGTGAAACATGGCATAAAATATCAGTGACATACAAAATTGGCCTCCCAAACATTCAGTTGAGTTTATATCTCAACTCATATCGACTCATATCCTCACCCCAAACATCCCTTGAGGGTGTTTGGGCCCCTAACTACAAGTGGGTGGAGTAGGCTGTTATAGTCCATATTTGGGGCTCTAATTATAATAGTTGATTTTTCCAACTATTATAACTTACAATTAAAATTAACTAGAGTGTTACTATTCCAAATCCGTTTTTGCAATGTTTACTATTTTCTACTCATCGTCTCTTTCCGTCTTTGCTACAATATTTACTACTTGCACAGATTAGAATAGTCTACATCCTAAACACAAACTATTATAGTCTACAGACTATAATAACTAACTCAATGCATTAAATACGCCCTATTTTACTATATTTTAGAATTCAAGGCTATTTATTTATTATTATTTTTTTAATGAGATTTTTAGGATTCAAGGGTTGAAATTTCATTTTAAAATTATGGGATCAGATGGAAATTTTCATGAGAGCTCAAGAGTATTAGGGATTTTGCAAAATGGAACCTTTTTGTTTATTTATTTATTTTAAACCATCTAATAAATAAGCTATAAGTGTACAATATTAGGCGTACATCTTTTCTAGACTTCAAATCTGAACAACTTATCCTAATGGTTTCAGATTATTTTAATTGCAGTATCCGGCAGAAACGCATGTGAGATCAGTATGTTGCACCAAGAAGATGCTGGTTTGAATGTGGAAATGGCAAAACTTGCGTTTGCAAAGGGCATATGGAGCTTTGTCTGTAAAATGGATAAAGCATTACGCAAATACGCTCTAATCAACCGCCCTCCATCAAGTTCACTTGTCACCGCAATTACTCTGATTAAGAAGGTTAAAAATGCTTACTCTTTACTTTATTGATACTAATTATACAATTTGTTCAAGATTAATTTTGTCACTTTATTGATTATCCAAGTGTATGTTGTATGTACTTAATTGTTTTATGGAGTGTTCTTATACTCACGCTTCTTACTGTTGTGGCAGAGAACACACTTCGTTAGTTTGCTTCGGGCAGTGTTTAGTGTCCTGTTTGTAGGCTGAGCTTGGATTTGTAGAAATTTGTCGTAAAGGGAATTACATTGCAAACATGTTATAGAGTTAGGTCACTTTGAACCGAAAAAAATATGGTAGAGTTTTTAATGTATAAGCGACCACAGTACATACATGTTCCTCTTATTGGTGTTTTCTTCCCATGGTGTCCTCTCCAAGATTTGGTTCAAAAGAAATCAACAAAAATTTTCAGAATCCTGCACAAACTCCTTTTGCTCGCTTCGACTTGGGCTCGTCCAAGGACTTCTAATTAGTGGTGTTCTCTTTTCAAGACTTGTTTTCAATTCAGGATATTCATTAATCCCTTTTAAGCTTCTTAAGGCTTTGTTTGTTTCCGGTTAGGCTCTTGTATGTGCTAGATATTCCTCTTATAGCTCGCTTTTGATGGATATGACTGACACATTTTCGTACATAAAGGTTCCAGATGGATTTGAGGACATGGATGGCATTATCTCTAAAGCAAACATTGTAGAAACCGAGTCTCCTGGACAAGTTTCTTCAGAAGAGAGAAAACTCTCGAGGGCATCAAAAAAGCTTGTGGCCAATGGTTTGCTTGTAATTGGTGGTATGATCTGCCTGTCGCGGTGTCACTCTAGTCTTGGTGCCAAAGTTGTTATGGCATATATTCTTACAAAGCTAAGCAAGAGAGCTGATGCACCAGGAGGCCAATTGGCAAGTAAAGAGCCTTAA

mRNA sequence

ATGATTGTTGGAGTTGGTGGAGGTGGCCGCTATCAGAGGTCGCTGGAGTTGGCTGTTGACGGTGGTGGTCGGATATGGCCGAAGTTGGCCACCACTGATGGTCTCGTTGGAGTGACAACGAAGGCATTGGTGGTGATGAGGGCTAGTGCACTGTTGGTGAAACATGGCATAAAATATCAAAACGCATGTGAGATCAGTATGTTGCACCAAGAAGATGCTGGTTTGAATGTGGAAATGGCAAAACTTGCGTTTGCAAAGGGCATATGGAGCTTTGTCTGTAAAATGGATAAAGCATTACGCAAATACGCTCTAATCAACCGCCCTCCATCAAGTTCACTTGTCACCGCAATTACTCTGATTAAGAAGGTTCCAGATGGATTTGAGGACATGGATGGCATTATCTCTAAAGCAAACATTGTAGAAACCGAGTCTCCTGGACAAGTTTCTTCAGAAGAGAGAAAACTCTCGAGGGCATCAAAAAAGCTTGTGGCCAATGGTTTGCTTGTAATTGGTGGTATGATCTGCCTGTCGCGGTGTCACTCTAGTCTTGGTGCCAAAGTTGTTATGGCATATATTCTTACAAAGCTAAGCAAGAGAGCTGATGCACCAGGAGGCCAATTGGCAAGTAAAGAGCCTTAA

Coding sequence (CDS)

ATGATTGTTGGAGTTGGTGGAGGTGGCCGCTATCAGAGGTCGCTGGAGTTGGCTGTTGACGGTGGTGGTCGGATATGGCCGAAGTTGGCCACCACTGATGGTCTCGTTGGAGTGACAACGAAGGCATTGGTGGTGATGAGGGCTAGTGCACTGTTGGTGAAACATGGCATAAAATATCAAAACGCATGTGAGATCAGTATGTTGCACCAAGAAGATGCTGGTTTGAATGTGGAAATGGCAAAACTTGCGTTTGCAAAGGGCATATGGAGCTTTGTCTGTAAAATGGATAAAGCATTACGCAAATACGCTCTAATCAACCGCCCTCCATCAAGTTCACTTGTCACCGCAATTACTCTGATTAAGAAGGTTCCAGATGGATTTGAGGACATGGATGGCATTATCTCTAAAGCAAACATTGTAGAAACCGAGTCTCCTGGACAAGTTTCTTCAGAAGAGAGAAAACTCTCGAGGGCATCAAAAAAGCTTGTGGCCAATGGTTTGCTTGTAATTGGTGGTATGATCTGCCTGTCGCGGTGTCACTCTAGTCTTGGTGCCAAAGTTGTTATGGCATATATTCTTACAAAGCTAAGCAAGAGAGCTGATGCACCAGGAGGCCAATTGGCAAGTAAAGAGCCTTAA

Protein sequence

MIVGVGGGGRYQRSLELAVDGGGRIWPKLATTDGLVGVTTKALVVMRASALLVKHGIKYQNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITLIKKVPDGFEDMDGIISKANIVETESPGQVSSEERKLSRASKKLVANGLLVIGGMICLSRCHSSLGAKVVMAYILTKLSKRADAPGGQLASKEP

Homology

[Close]

BLAST of Cla007132 vs. TrEMBL
Match: A0A0A0LCC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G257060 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.1e-65
Identity = 131/152 (86.18%), Postives = 142/152 (93.42%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           +NACEI+MLHQEDAGLNVEMAKL FAKGIWSFVCKMDKALRKY+LIN  PSSSLV+A+TL
Sbjct: 247 RNACEITMLHQEDAGLNVEMAKLVFAKGIWSFVCKMDKALRKYSLINNYPSSSLVSAVTL 306

Query: 120 IKKVPDGFEDMDGIISKANIVETESPGQVSSEERKLSRASKKLVANGLLVIGGMICLSRC 179
           IKKVPDGFEDMDGIIS+ N+VETES GQVSSEERKLSRASKKL+ NGLL+IGG+ICLSR 
Sbjct: 307 IKKVPDGFEDMDGIISEENMVETESCGQVSSEERKLSRASKKLLTNGLLLIGGVICLSRG 366

Query: 180 HSSLGAKVVMAYILTKLSKRADAPGGQLASKE 212
           HSSLGAKVVMAYILTKLSKR DAP GQ+AS E
Sbjct: 367 HSSLGAKVVMAYILTKLSKRVDAPQGQMASVE 398

[Close]

BLAST of Cla007132 vs. TrEMBL
Match: V4SMW0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028538mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.4e-39
Identity = 88/148 (59.46%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           ++ACEI + HQEDAGLNVEMAKLAFAKGIWS+VCKMD ALR YA+++ P +   V+A+TL
Sbjct: 258 RDACEIKVFHQEDAGLNVEMAKLAFAKGIWSYVCKMDNALRNYAVVSHPQTIPAVSAVTL 317

Query: 120 IKKVPDGFEDMDGIISKANIVETESPGQVSSE---ERKLSRASKKLVANGLLVIGGMICL 179
           I+KVP G E+++   S A+       G  +SE   ++   R SKKLVANGLL++GG+ICL
Sbjct: 318 IQKVPLGLEEINRASSSASPAADAVQGLYTSEAKLKKLAKRPSKKLVANGLLLLGGVICL 377

Query: 180 SRCHSSLGAKVVMAYILTKLSKRADAPG 205
           SR HS+LGAKV MAYILTKL KR+ + G
Sbjct: 378 SRGHSALGAKVAMAYILTKLHKRSGSSG 405

[Close]

BLAST of Cla007132 vs. TrEMBL
Match: V4SHV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028538mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.4e-39
Identity = 88/148 (59.46%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           ++ACEI + HQEDAGLNVEMAKLAFAKGIWS+VCKMD ALR YA+++ P +   V+A+TL
Sbjct: 257 RDACEIKVFHQEDAGLNVEMAKLAFAKGIWSYVCKMDNALRNYAVVSHPQTIPAVSAVTL 316

Query: 120 IKKVPDGFEDMDGIISKANIVETESPGQVSSE---ERKLSRASKKLVANGLLVIGGMICL 179
           I+KVP G E+++   S A+       G  +SE   ++   R SKKLVANGLL++GG+ICL
Sbjct: 317 IQKVPLGLEEINRASSSASPAADAVQGLYTSEAKLKKLAKRPSKKLVANGLLLLGGVICL 376

Query: 180 SRCHSSLGAKVVMAYILTKLSKRADAPG 205
           SR HS+LGAKV MAYILTKL KR+ + G
Sbjct: 377 SRGHSALGAKVAMAYILTKLHKRSGSSG 404

[Close]

BLAST of Cla007132 vs. TrEMBL
Match: B9RHS6_RICCO (Phosphatidylcholine transfer protein, putative OS=Ricinus communis GN=RCOM_1573300 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.6e-39
Identity = 92/151 (60.93%), Postives = 112/151 (74.17%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           +NACEI M HQEDAGLNVEMAKLAFA+GIWS+VCKMD ALRKY  I+RP     VTA++L
Sbjct: 223 RNACEIKMYHQEDAGLNVEMAKLAFARGIWSYVCKMDNALRKYNAISRPHIGPAVTAVSL 282

Query: 120 IKKVPDGFEDMDGII-SKANIVETESPGQVSSEERKLS---RASKKLVANGLLVIGGMIC 179
           I+KVP G E ++ I+ + A        G V+ E R+     R S+K++ANGLL++GG+IC
Sbjct: 283 IQKVPPGLETINHIVDTPATPARIPMDGLVTDETREKKFRRRPSRKVLANGLLLLGGVIC 342

Query: 180 LSRCHSSLGAKVVMAYILTKLSKRADAPGGQ 207
           LSR HSSLGAKV MAYILTKL K+ DA  GQ
Sbjct: 343 LSRGHSSLGAKVAMAYILTKLRKQ-DASSGQ 372

[Close]

BLAST of Cla007132 vs. TrEMBL
Match: A0A061G8R2_THECC (Polyketide cyclase/dehydrase and lipid transport superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_027668 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-38
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           ++A EI M HQEDAGLNVEMAKLAFAKGIWS+VCKMD ALRKY++I+ P +S  V+A TL
Sbjct: 256 RDASEIRMFHQEDAGLNVEMAKLAFAKGIWSYVCKMDNALRKYSVISHPLTSPAVSAATL 315

Query: 120 IKKVPDGFEDMDGIISKANIVETES--PGQVSSEERKLS-RASKKLVANGLLVIGGMICL 179
           I+KVP   +   G+ S A      S  P    S E+KLS R SKKLVA  LLV+GG+ICL
Sbjct: 316 IQKVPPELDTTSGVTSAAASTSMASCEPVNGESREKKLSRRPSKKLVAKSLLVLGGVICL 375

Query: 180 SRCHSSLGAKVVMAYILTKLSKRADA 203
           SR HS+LGAKV MAYILTKL KR D+
Sbjct: 376 SRGHSALGAKVAMAYILTKLRKRGDS 401

[Close]

BLAST of Cla007132 vs. NCBI nr
Match: gi|659123199|ref|XP_008461544.1| (PREDICTED: phosphatidylcholine transfer protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.8e-65
Identity = 134/152 (88.16%), Postives = 140/152 (92.11%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           +NACEISMLHQEDAGLNVEMAKL FAKGIWSFVCKMDKALRKYALIN  PSSSLV+AITL
Sbjct: 165 RNACEISMLHQEDAGLNVEMAKLVFAKGIWSFVCKMDKALRKYALINNHPSSSLVSAITL 224

Query: 120 IKKVPDGFEDMDGIISKANIVETESPGQVSSEERKLSRASKKLVANGLLVIGGMICLSRC 179
           IKKVPDG ED DGIISKAN+VE ES GQVSSEERKLSRASKKLV NGLL+IGG+ICLSR 
Sbjct: 225 IKKVPDGLEDTDGIISKANMVEIESCGQVSSEERKLSRASKKLVTNGLLLIGGVICLSRG 284

Query: 180 HSSLGAKVVMAYILTKLSKRADAPGGQLASKE 212
           HSSLGAKVVMAYILTKLSKR DAP GQ+AS E
Sbjct: 285 HSSLGAKVVMAYILTKLSKRVDAPRGQMASVE 316

[Close]

BLAST of Cla007132 vs. NCBI nr
Match: gi|659123201|ref|XP_008461545.1| (PREDICTED: phosphatidylcholine transfer protein-like isoform X3 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.8e-65
Identity = 134/152 (88.16%), Postives = 140/152 (92.11%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           +NACEISMLHQEDAGLNVEMAKL FAKGIWSFVCKMDKALRKYALIN  PSSSLV+AITL
Sbjct: 124 RNACEISMLHQEDAGLNVEMAKLVFAKGIWSFVCKMDKALRKYALINNHPSSSLVSAITL 183

Query: 120 IKKVPDGFEDMDGIISKANIVETESPGQVSSEERKLSRASKKLVANGLLVIGGMICLSRC 179
           IKKVPDG ED DGIISKAN+VE ES GQVSSEERKLSRASKKLV NGLL+IGG+ICLSR 
Sbjct: 184 IKKVPDGLEDTDGIISKANMVEIESCGQVSSEERKLSRASKKLVTNGLLLIGGVICLSRG 243

Query: 180 HSSLGAKVVMAYILTKLSKRADAPGGQLASKE 212
           HSSLGAKVVMAYILTKLSKR DAP GQ+AS E
Sbjct: 244 HSSLGAKVVMAYILTKLSKRVDAPRGQMASVE 275

[Close]

BLAST of Cla007132 vs. NCBI nr
Match: gi|659123197|ref|XP_008461543.1| (PREDICTED: phosphatidylcholine transfer protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.8e-65
Identity = 134/152 (88.16%), Postives = 140/152 (92.11%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           +NACEISMLHQEDAGLNVEMAKL FAKGIWSFVCKMDKALRKYALIN  PSSSLV+AITL
Sbjct: 238 RNACEISMLHQEDAGLNVEMAKLVFAKGIWSFVCKMDKALRKYALINNHPSSSLVSAITL 297

Query: 120 IKKVPDGFEDMDGIISKANIVETESPGQVSSEERKLSRASKKLVANGLLVIGGMICLSRC 179
           IKKVPDG ED DGIISKAN+VE ES GQVSSEERKLSRASKKLV NGLL+IGG+ICLSR 
Sbjct: 298 IKKVPDGLEDTDGIISKANMVEIESCGQVSSEERKLSRASKKLVTNGLLLIGGVICLSRG 357

Query: 180 HSSLGAKVVMAYILTKLSKRADAPGGQLASKE 212
           HSSLGAKVVMAYILTKLSKR DAP GQ+AS E
Sbjct: 358 HSSLGAKVVMAYILTKLSKRVDAPRGQMASVE 389

[Close]

BLAST of Cla007132 vs. NCBI nr
Match: gi|449455774|ref|XP_004145626.1| (PREDICTED: uncharacterized protein LOC101203824 isoform X1 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 3.1e-65
Identity = 131/152 (86.18%), Postives = 142/152 (93.42%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           +NACEI+MLHQEDAGLNVEMAKL FAKGIWSFVCKMDKALRKY+LIN  PSSSLV+A+TL
Sbjct: 247 RNACEITMLHQEDAGLNVEMAKLVFAKGIWSFVCKMDKALRKYSLINNYPSSSLVSAVTL 306

Query: 120 IKKVPDGFEDMDGIISKANIVETESPGQVSSEERKLSRASKKLVANGLLVIGGMICLSRC 179
           IKKVPDGFEDMDGIIS+ N+VETES GQVSSEERKLSRASKKL+ NGLL+IGG+ICLSR 
Sbjct: 307 IKKVPDGFEDMDGIISEENMVETESCGQVSSEERKLSRASKKLLTNGLLLIGGVICLSRG 366

Query: 180 HSSLGAKVVMAYILTKLSKRADAPGGQLASKE 212
           HSSLGAKVVMAYILTKLSKR DAP GQ+AS E
Sbjct: 367 HSSLGAKVVMAYILTKLSKRVDAPQGQMASVE 398

[Close]

BLAST of Cla007132 vs. NCBI nr
Match: gi|778680565|ref|XP_011651346.1| (PREDICTED: phosphatidylcholine transfer protein isoform X2 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 3.1e-65
Identity = 131/152 (86.18%), Postives = 142/152 (93.42%), Query Frame = 1


Query: 60  QNACEISMLHQEDAGLNVEMAKLAFAKGIWSFVCKMDKALRKYALINRPPSSSLVTAITL 119
           +NACEI+MLHQEDAGLNVEMAKL FAKGIWSFVCKMDKALRKY+LIN  PSSSLV+A+TL
Sbjct: 165 RNACEITMLHQEDAGLNVEMAKLVFAKGIWSFVCKMDKALRKYSLINNYPSSSLVSAVTL 224

Query: 120 IKKVPDGFEDMDGIISKANIVETESPGQVSSEERKLSRASKKLVANGLLVIGGMICLSRC 179
           IKKVPDGFEDMDGIIS+ N+VETES GQVSSEERKLSRASKKL+ NGLL+IGG+ICLSR 
Sbjct: 225 IKKVPDGFEDMDGIISEENMVETESCGQVSSEERKLSRASKKLLTNGLLLIGGVICLSRG 284

Query: 180 HSSLGAKVVMAYILTKLSKRADAPGGQLASKE 212
           HSSLGAKVVMAYILTKLSKR DAP GQ+AS E
Sbjct: 285 HSSLGAKVVMAYILTKLSKRVDAPQGQMASVE 316

The following BLAST results are available for this feature:

BLAST of Cla007132 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC1_CUCSA	2.1e-65	86.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G257060 PE=4 SV=1	[more]
V4SMW0_9ROSI	3.4e-39	59.46	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028538mg PE=4 SV=1	[more]
V4SHV5_9ROSI	3.4e-39	59.46	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028538mg PE=4 SV=1	[more]
B9RHS6_RICCO	7.6e-39	60.93	Phosphatidylcholine transfer protein, putative OS=Ricinus communis GN=RCOM_15733...	[more]
A0A061G8R2_THECC	2.2e-38	63.01	Polyketide cyclase/dehydrase and lipid transport superfamily protein isoform 1 O...	[more]

BLAST of Cla007132 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123199\|ref\|XP_008461544.1\|	1.8e-65	88.16	PREDICTED: phosphatidylcholine transfer protein-like isoform X2 [Cucumis melo]	[more]
gi\|659123201\|ref\|XP_008461545.1\|	1.8e-65	88.16	PREDICTED: phosphatidylcholine transfer protein-like isoform X3 [Cucumis melo]	[more]
gi\|659123197\|ref\|XP_008461543.1\|	1.8e-65	88.16	PREDICTED: phosphatidylcholine transfer protein-like isoform X1 [Cucumis melo]	[more]
gi\|449455774\|ref\|XP_004145626.1\|	3.1e-65	86.18	PREDICTED: uncharacterized protein LOC101203824 isoform X1 [Cucumis sativus]	[more]
gi\|778680565\|ref\|XP_011651346.1\|	3.1e-65	86.18	PREDICTED: phosphatidylcholine transfer protein isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023393	START-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008289	lipid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU53880	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007132	Cla007132.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU53880	WMU53880	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023393	START-like domain	GENE3D	G3DSA:3.30.530.20		coord: 59..102 score: 1.
None	No IPR available	PANTHER	PTHR19308	PHOSPHATIDYLCHOLINE TRANSFER PROTEIN	coord: 61..199 score: 1.2
None	No IPR available	PANTHER	PTHR19308:SF13	MEMBRANE RELATED PROTEIN CP5-RELATED	coord: 61..199 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007132	Csa3G257060	Cucumber (Chinese Long) v2	cuwmB236
Cla007132	MELO3C023731	Melon (DHL92) v3.5.1	mewmB473
Cla007132	ClCG05G012260	Watermelon (Charleston Gray)	wcgwmB287
Cla007132	CSPI03G20200	Wild cucumber (PI 183967)	cpiwmB234
Cla007132	Cucsa.031820	Cucumber (Gy14) v1	cgywmB005
Cla007132	CmaCh14G007880	Cucurbita maxima (Rimu)	cmawmB241
Cla007132	CmoCh14G008030	Cucurbita moschata (Rifu)	cmowmB229
Cla007132	Lsi05G004170	Bottle gourd (USVL1VR-Ls)	lsiwmB363
Cla007132	CsGy3G019990	Cucumber (Gy14) v2	cgybwmB222
Cla007132	MELO3C023731.2	Melon (DHL92) v3.6.1	medwmB449
Cla007132	Carg22294	Silver-seed gourd	carwmB0475
Cla007132	CsaV3_3G020170	Cucumber (Chinese Long) v3	cucwmB244
Cla007132	Bhi01G001381	Wax gourd	wgowmB222

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007132	Silver-seed gourd	carwmB0477
Cla007132	Silver-seed gourd	carwmB0761
Cla007132	Cucumber (Chinese Long) v3	cucwmB256
Cla007132	Watermelon (97103) v2	wmwmbB208
Cla007132	Wax gourd	wgowmB217
Cla007132	Cucumber (Gy14) v1	cgywmB003
Cla007132	Cucurbita maxima (Rimu)	cmawmB244
Cla007132	Cucurbita maxima (Rimu)	cmawmB437
Cla007132	Cucurbita moschata (Rifu)	cmowmB233
Cla007132	Cucurbita moschata (Rifu)	cmowmB431
Cla007132	Melon (DHL92) v3.5.1	mewmB463
Cla007132	Cucumber (Chinese Long) v2	cuwmB247
Cla007132	Cucurbita pepo (Zucchini)	cpewmB571
Cla007132	Cucurbita pepo (Zucchini)	cpewmB611
Cla007132	Cucurbita pepo (Zucchini)	cpewmB615
Cla007132	Bottle gourd (USVL1VR-Ls)	lsiwmB369
Cla007132	Cucumber (Gy14) v2	cgybwmB233
Cla007132	Melon (DHL92) v3.6.1	medwmB454
Cla007132	Melon (DHL92) v3.6.1	medwmB457