Cla006790 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006790
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Transmembrane protein 18 (AHRD V1 ***- B6TMF2_MAIZE)
Location	Chr2 : 9355311 .. 9357024 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGACCAAATGGCGGATCTGATTCACAAACTTTCCTCCGAACTCCGATCCGGTCTCCGTCCCGCCGTTGATAATTTCGTCGGTTTCTTCCACGCTATTGACTGGAAGGTAAAATTCACTCAAACCCCATCAAAAGACTTTTATCTTATTTTGCTTCTTTTTCGATCTTGTTTCCTGCTCTGTGGTTCTGTGAAGTTCTTTCTCAATTTGAGTATTGTTTTTATGTATTCTGTGACATTTTGCAGGAACCTTGGTTGATGGGATTATTGGGTTTTCATGGATTGTTGCTGATAATAACTATCTTTACCAGGAAGCGTACCAACTTTCAGATGTTCTTGTTCCTTCTTGCACGTATGATCTTTTCTCCTATTTGCTCTTTTTGCTGAAATGTAATGGCATTGTTCAAGGTTTTGCTATTTTGAGTTGTTTGATTGCTGTTCATATTGCATCCTGGCAAAGTAGTGAGTTATGGTCTAAGCAATCTTTATTAACTCTTGAGCTTAGAGATGGATTCTGAGCTTAGAATATCTTTTTGGAAATTATTTGCTGCATCAAGGTTGCAATTATATAGTTATGTGTGCATAATGTACATATTGCATCCTATGGTAGTGAGTTTTGCTCTAGCCATTTAAGGTATGGAAATATACTACCTCTTGAGCTTAAAGATGAACTCTGAGGTTTGAATGTATTTTTGGAGTCATGCTGCAAGGTTGCAATAATACAATCATATGATTACATGCAGGCTTCAGTTGTTGATTGATGTTTCTTATGTGTGTATGATTTCCAACCATAATGCTATTTGGTTTAACCTGGTTGCTTTTTATTTGACTATTTTAAATAAATAGTTCTCTCTCTTTTTCAATCTCTTTTGGCTTGTAGTAGGAAGTGTAAGGTGTATGATCAAATGTTGTCAATGTCATATATTTCAATTGTGTACTAGAAAGGAATCCCCTTGCATACCACTAAAATTCTCTCATGCTTGTGGTACATTTCAGATTTACATTTTACATGTTGATATGTACATCTTTCATGTATTTCAAGGAGAAGACCCCCTTTTTTGCATTCCACAGAAGTCCTTTCTTGTTCACATTCATATTTTGCAAGGAATACACATTTTCATGTACTTCTCAACTCTAATTGTTCTTCATTTCAAGGGATAAGAAATCCATATTTGGAGTACTTGTACACTTTAGAACTTAAAGGGCACAATTGTACAACTCATAGAACAGATCCTGTTCAAATAAGGTCACAAGTAGTTACATTTTTATTTGTCATGCAGTGGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGGGCAAAAACTGGAAGAACTTCGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCTTATCAGCACTCTGGTCTGGGCCACTGCTTGTAATTTCAATGATAATCCTGGCAAGTGCTTGCTATTTCTTGTTTTCATCATGTCCATGGTAACCCCCCACTAAAAATGAAAAAGCTGGGATGAGTTATTTTTCTCTCATTTGTTTGTTATCTAGTTTTCTTTTCTGGGTTAGGAACACTTAACTGAACCCTCATTTCTGTATGACAGATAAACACGCTCTTTACGTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGACATCGCGCAAGACTTTCACAGAGTAAAGAAGATTGA

mRNA sequence

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGACCAAATGGCGGATCTGATTCACAAACTTTCCTCCGAACTCCGATCCGGTCTCCGTCCCGCCGTTGATAATTTCGTCGGTTTCTTCCACGCTATTGACTGGAAGGAACCTTGGTTGATGGGATTATTGGGTTTTCATGGATTGTTGCTGATAATAACTATCTTTACCAGGAAGCGTACCAACTTTCAGATGTTCTTGTTCCTTCTTGCACTGGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGGGCAAAAACTGGAAGAACTTCGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCTTATCAGCACTCTGGTCTGGGCCACTGCTTATAAACACGCTCTTTACGTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGACATCGCGCAAGACTTTCACAGAGTAAAGAAGATTGA

Coding sequence (CDS)

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGACCAAATGGCGGATCTGATTCACAAACTTTCCTCCGAACTCCGATCCGGTCTCCGTCCCGCCGTTGATAATTTCGTCGGTTTCTTCCACGCTATTGACTGGAAGGAACCTTGGTTGATGGGATTATTGGGTTTTCATGGATTGTTGCTGATAATAACTATCTTTACCAGGAAGCGTACCAACTTTCAGATGTTCTTGTTCCTTCTTGCACTGGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGGGCAAAAACTGGAAGAACTTCGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCTTATCAGCACTCTGGTCTGGGCCACTGCTTATAAACACGCTCTTTACGTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGACATCGCGCAAGACTTTCACAGAGTAAAGAAGATTGA

Protein sequence

MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALWSGPLLINTLFTLCYLVVRWKRAELRHRARLSQSKED

Homology

[Close]

BLAST of Cla006790 vs. Swiss-Prot
Match: TMM18_BOVIN (Transmembrane protein 18 OS=Bos taurus GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.8e-18
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFA 104
           DW EPWL+GL GFH L L++T F+ +R   Q+  FL  +  VY AE IN +   NW+ F+
Sbjct: 22  DWTEPWLVGLAGFHVLCLLLTCFSSQRYRLQVGHFLCLVTLVYCAEYINEVAAMNWRLFS 81

Query: 105 TQNYFDPNGVFLSALWSGPLLINTLFTLCYLVVRWKRAEL 145
              YFD  G+F+S ++S PLL+N L     +VV W R  L
Sbjct: 82  KHQYFDSRGMFISLVFSAPLLLNAL----VIVVLWVRKTL 117

[Close]

BLAST of Cla006790 vs. Swiss-Prot
Match: TMM18_RAT (Transmembrane protein 18 OS=Rattus norvegicus GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-17
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFA 104
           DW EPWL+GLL FH L L++T F+ +R   Q+  FL  +  VY AE IN +   NW+ FA
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSAQRYKLQIGHFLCLVVLVYCAEYINEVAAMNWRLFA 81

Query: 105 TQNYFDPNGVFLSALWSGPLLINTLFTLCYLVVRWKRAELRHRARLSQSKE 156
              YFD  G+F+S ++S PLL N +     +V+ W R  L   + L   +E
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAM----VIVIMWVRKTLTVMSDLKNLQE 128

[Close]

BLAST of Cla006790 vs. Swiss-Prot
Match: TMM18_MOUSE (Transmembrane protein 18 OS=Mus musculus GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFA 104
           DW EPWL+GLL FH L L++T F+ +R   Q+  FL  +  VY AE IN +   NW+ F+
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSSQRYKLQIGHFLCLVVLVYSAEYINEVAAVNWRLFS 81

Query: 105 TQNYFDPNGVFLSALWSGPLLINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
              YFD  G+F+S ++S PLL N +     +V+ W R  L     L   +E+
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAML----IVIMWVRKTLTVMTDLKTLQEE 129

[Close]

BLAST of Cla006790 vs. Swiss-Prot
Match: TMM18_DANRE (Transmembrane protein 18 OS=Danio rerio GN=tmem18 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.7e-17
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 40  FFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKN 99
           F  ++DW EPWLM LL FH      T+ + K    Q+  FLL +A VY AE +N +   N
Sbjct: 28  FLQSVDWSEPWLMALLAFHVFCFAFTLLSCKYYRIQICHFLLMVAMVYSAEYLNELAAMN 87

Query: 100 WKNFATQNYFDPNGVFLSALWSGPLLINTLFTLCYLVVR 139
           W++F+   YFD  G+F+S ++S PLL+NT+  +   V R
Sbjct: 88  WRSFSKFQYFDSKGMFISLVYSVPLLLNTVIIVAVWVWR 126

[Close]

BLAST of Cla006790 vs. Swiss-Prot
Match: TMM18_CHICK (Transmembrane protein 18 OS=Gallus gallus GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-16
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFA 104
           DW EPWL+GL GFH L  ++T F+ +    Q+  FL  +  VY AE IN +   NW+ F+
Sbjct: 26  DWAEPWLLGLAGFHVLCFLLTCFSFQHYRVQIGHFLCMVCLVYCAEYINELAAMNWRLFS 85

Query: 105 TQNYFDPNGVFLSALWSGPLLINTLFTLCYLVVRW 140
              YFD  G+F+S ++S PLL+NT+     +VV W
Sbjct: 86  KYQYFDSRGMFISLVFSAPLLVNTII----IVVNW 116

[Close]

BLAST of Cla006790 vs. TrEMBL
Match: A0A0A0LN62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431140 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 147/163 (90.18%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRS MEEHMDQM+DLI KLSSELRSGLRPA+DNF+GFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LLIITIFTRKRTNFQMFLFLLALAGVYFAE IN IL KNWKNFATQNYFDPNGVFLSALW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAEIINGILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLFTLCYLVVRWKRAELRHRARLSQSKED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of Cla006790 vs. TrEMBL
Match: A0A067KMY9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09773 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.9e-67
Identity = 123/163 (75.46%), Postives = 144/163 (88.34%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRSA+E+HM QMADL+ KLS+ELRSGLRPA +NF+GFFHAIDWKEPWLMGLL FH +
Sbjct: 1   MDELRSALEDHMVQMADLVQKLSAELRSGLRPAYENFMGFFHAIDWKEPWLMGLLTFHAV 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LLII I +RK  NFQMFLFLLAL GVYFAER+NR+LG NW++FA+QNYFDP+G+FLSALW
Sbjct: 61  LLIIAIISRKHVNFQMFLFLLALGGVYFAERLNRVLGDNWRSFASQNYFDPHGIFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLF+LCY++VRWKRAELRHRARLS +K+D
Sbjct: 121 SGPLLIIATIILINTLFSLCYMIVRWKRAELRHRARLSHNKQD 163

[Close]

BLAST of Cla006790 vs. TrEMBL
Match: C6T4J9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G156600 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 6.4e-67
Identity = 120/163 (73.62%), Postives = 143/163 (87.73%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           MEEL+SAMEEHMD MADL+ KLSS+LR+G RPA DNF+GFFHAIDWKEPWLMGLLGFH +
Sbjct: 1   MEELKSAMEEHMDLMADLVQKLSSDLRAGFRPAYDNFIGFFHAIDWKEPWLMGLLGFHVV 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LL++ I +RK+TNFQMFLFLL LAGVYFAE +NR LGKNWK+F++QNYFDP G+F+S LW
Sbjct: 61  LLLVAIISRKKTNFQMFLFLLTLAGVYFAESLNRFLGKNWKSFSSQNYFDPRGLFMSVLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLF+LCY++VRWKRAELRHRAR +++K+D
Sbjct: 121 SGPLLVISMIILINTLFSLCYMIVRWKRAELRHRARAARNKQD 163

[Close]

BLAST of Cla006790 vs. TrEMBL
Match: A0A0B2RE88_GLYSO (Transmembrane protein 18 OS=Glycine soja GN=glysoja_024155 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 6.4e-67
Identity = 120/163 (73.62%), Postives = 143/163 (87.73%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           MEEL+SAMEEHMD MADL+ KLSS+LR+G RPA DNF+GFFHAIDWKEPWLMGLLGFH +
Sbjct: 1   MEELKSAMEEHMDLMADLVQKLSSDLRAGFRPAYDNFIGFFHAIDWKEPWLMGLLGFHVV 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LL++ I +RK+TNFQMFLFLL LAGVYFAE +NR LGKNWK+F++QNYFDP G+F+S LW
Sbjct: 61  LLLVAIISRKKTNFQMFLFLLTLAGVYFAESLNRFLGKNWKSFSSQNYFDPRGLFMSVLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLF+LCY++VRWKRAELRHRAR +++K+D
Sbjct: 121 SGPLLVISMIILINTLFSLCYMIVRWKRAELRHRARAARNKQD 163

[Close]

BLAST of Cla006790 vs. TrEMBL
Match: I1JD82_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G074600 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 8.3e-67
Identity = 120/163 (73.62%), Postives = 142/163 (87.12%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMD MADL+ K SS+LR+G RPA DNF+GFFHAIDWKEPWLMGLLGFH +
Sbjct: 1   MEELRSAMEEHMDLMADLVQKFSSDLRAGFRPAYDNFIGFFHAIDWKEPWLMGLLGFHVV 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LL++ I +RK+TNFQMFLFLL LAGVY AE +NR LGKNWKNF++QNYFDP+G+F+S LW
Sbjct: 61  LLLVAIISRKKTNFQMFLFLLTLAGVYLAESLNRFLGKNWKNFSSQNYFDPSGLFMSVLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLF+LCY++VRWKRAELRHRAR +++K+D
Sbjct: 121 SGPLLVISMIILINTLFSLCYMIVRWKRAELRHRARAARNKQD 163

[Close]

BLAST of Cla006790 vs. NCBI nr
Match: gi|778673730|ref|XP_011650049.1| (PREDICTED: transmembrane protein 18 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77
Identity = 147/163 (90.18%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRS MEEHMDQM+DLI KLSSELRSGLRPA+DNF+GFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LLIITIFTRKRTNFQMFLFLLALAGVYFAE IN IL KNWKNFATQNYFDPNGVFLSALW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAEIINGILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLFTLCYLVVRWKRAELRHRARLSQSKED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of Cla006790 vs. NCBI nr
Match: gi|659125677|ref|XP_008462809.1| (PREDICTED: transmembrane protein 18 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 7.5e-77
Identity = 145/163 (88.96%), Postives = 150/163 (92.02%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRSAMEEHMDQM+DLI KLSSELRSGLRPA+DNF+GFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSAMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LLIITIFTRKRTNFQMFLFL ALAGVYFAE IN+IL KNWK FATQNYFDPNGVFLSALW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLFALAGVYFAEGINKILSKNWKKFATQNYFDPNGVFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
            GPL       LINTLFTLCYLVVRWKRAELRHRARLSQSKED
Sbjct: 121 CGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of Cla006790 vs. NCBI nr
Match: gi|802608898|ref|XP_012074110.1| (PREDICTED: transmembrane protein 18 [Jatropha curcas])

HSP 1 Score: 262.7 bits (670), Expect = 4.1e-67
Identity = 123/163 (75.46%), Postives = 144/163 (88.34%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRSA+E+HM QMADL+ KLS+ELRSGLRPA +NF+GFFHAIDWKEPWLMGLL FH +
Sbjct: 1   MDELRSALEDHMVQMADLVQKLSAELRSGLRPAYENFMGFFHAIDWKEPWLMGLLTFHAV 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LLII I +RK  NFQMFLFLLAL GVYFAER+NR+LG NW++FA+QNYFDP+G+FLSALW
Sbjct: 61  LLIIAIISRKHVNFQMFLFLLALGGVYFAERLNRVLGDNWRSFASQNYFDPHGIFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLF+LCY++VRWKRAELRHRARLS +K+D
Sbjct: 121 SGPLLIIATIILINTLFSLCYMIVRWKRAELRHRARLSHNKQD 163

[Close]

BLAST of Cla006790 vs. NCBI nr
Match: gi|351726130|ref|NP_001237116.1| (uncharacterized protein LOC100527513 [Glycine max])

HSP 1 Score: 261.5 bits (667), Expect = 9.1e-67
Identity = 120/163 (73.62%), Postives = 143/163 (87.73%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           MEEL+SAMEEHMD MADL+ KLSS+LR+G RPA DNF+GFFHAIDWKEPWLMGLLGFH +
Sbjct: 1   MEELKSAMEEHMDLMADLVQKLSSDLRAGFRPAYDNFIGFFHAIDWKEPWLMGLLGFHVV 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LL++ I +RK+TNFQMFLFLL LAGVYFAE +NR LGKNWK+F++QNYFDP G+F+S LW
Sbjct: 61  LLLVAIISRKKTNFQMFLFLLTLAGVYFAESLNRFLGKNWKSFSSQNYFDPRGLFMSVLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLF+LCY++VRWKRAELRHRAR +++K+D
Sbjct: 121 SGPLLVISMIILINTLFSLCYMIVRWKRAELRHRARAARNKQD 163

[Close]

BLAST of Cla006790 vs. NCBI nr
Match: gi|356499000|ref|XP_003518332.1| (PREDICTED: transmembrane protein 18-like [Glycine max])

HSP 1 Score: 261.2 bits (666), Expect = 1.2e-66
Identity = 120/163 (73.62%), Postives = 142/163 (87.12%), Query Frame = 1


Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMD MADL+ K SS+LR+G RPA DNF+GFFHAIDWKEPWLMGLLGFH +
Sbjct: 1   MEELRSAMEEHMDLMADLVQKFSSDLRAGFRPAYDNFIGFFHAIDWKEPWLMGLLGFHVV 60

Query: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILGKNWKNFATQNYFDPNGVFLSALW 120
           LL++ I +RK+TNFQMFLFLL LAGVY AE +NR LGKNWKNF++QNYFDP+G+F+S LW
Sbjct: 61  LLLVAIISRKKTNFQMFLFLLTLAGVYLAESLNRFLGKNWKNFSSQNYFDPSGLFMSVLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRHRARLSQSKED 157
           SGPL       LINTLF+LCY++VRWKRAELRHRAR +++K+D
Sbjct: 121 SGPLLVISMIILINTLFSLCYMIVRWKRAELRHRARAARNKQD 163

The following BLAST results are available for this feature:

BLAST of Cla006790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMM18_BOVIN	7.8e-18	45.00	Transmembrane protein 18 OS=Bos taurus GN=TMEM18 PE=2 SV=1	[more]
TMM18_RAT	1.0e-17	41.44	Transmembrane protein 18 OS=Rattus norvegicus GN=Tmem18 PE=2 SV=1	[more]
TMM18_MOUSE	2.3e-17	40.18	Transmembrane protein 18 OS=Mus musculus GN=Tmem18 PE=2 SV=1	[more]
TMM18_DANRE	8.7e-17	41.41	Transmembrane protein 18 OS=Danio rerio GN=tmem18 PE=2 SV=1	[more]
TMM18_CHICK	1.5e-16	43.16	Transmembrane protein 18 OS=Gallus gallus GN=TMEM18 PE=2 SV=1	[more]

BLAST of Cla006790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN62_CUCSA	1.0e-77	90.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431140 PE=4 SV=1	[more]
A0A067KMY9_JATCU	2.9e-67	75.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09773 PE=4 SV=1	[more]
C6T4J9_SOYBN	6.4e-67	73.62	Uncharacterized protein OS=Glycine max GN=GLYMA_16G156600 PE=2 SV=1	[more]
A0A0B2RE88_GLYSO	6.4e-67	73.62	Transmembrane protein 18 OS=Glycine soja GN=glysoja_024155 PE=4 SV=1	[more]
I1JD82_SOYBN	8.3e-67	73.62	Uncharacterized protein OS=Glycine max GN=GLYMA_02G074600 PE=4 SV=1	[more]

BLAST of Cla006790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673730\|ref\|XP_011650049.1\|	1.5e-77	90.18	PREDICTED: transmembrane protein 18 [Cucumis sativus]	[more]
gi\|659125677\|ref\|XP_008462809.1\|	7.5e-77	88.96	PREDICTED: transmembrane protein 18 [Cucumis melo]	[more]
gi\|802608898\|ref\|XP_012074110.1\|	4.1e-67	75.46	PREDICTED: transmembrane protein 18 [Jatropha curcas]	[more]
gi\|351726130\|ref\|NP_001237116.1\|	9.1e-67	73.62	uncharacterized protein LOC100527513 [Glycine max]	[more]
gi\|356499000\|ref\|XP_003518332.1\|	1.2e-66	73.62	PREDICTED: transmembrane protein 18-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026721	TMEM18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU13716	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU24897	watermelon EST collection version 2.0	transcribed_cluster
WMU36235	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU63866	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006790	Cla006790.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU36235	WMU36235	transcribed_cluster
WMU13716	WMU13716	transcribed_cluster
WMU63866	WMU63866	transcribed_cluster
WMU24897	WMU24897	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026721	Transmembrane protein 18	PFAM	PF14770	TMEM18	coord: 38..149 score: 3.7
None	No IPR available	unknown	Coil	Coil	coord: 150..156 score: -coord: 1..21 scor
None	No IPR available	PANTHER	PTHR22593	FAMILY NOT NAMED	coord: 1..156 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006790	Cla97C02G034530	Watermelon (97103) v2	wmwmbB326
Cla006790	Csa2G431140	Cucumber (Chinese Long) v2	cuwmB143
Cla006790	MELO3C024753	Melon (DHL92) v3.5.1	mewmB125
Cla006790	ClCG02G007860	Watermelon (Charleston Gray)	wcgwmB208
Cla006790	CSPI02G27300	Wild cucumber (PI 183967)	cpiwmB145
Cla006790	Cucsa.017300	Cucumber (Gy14) v1	cgywmB485
Cla006790	Lsi10G002100	Bottle gourd (USVL1VR-Ls)	lsiwmB068
Cla006790	CsGy2G026750	Cucumber (Gy14) v2	cgybwmB136
Cla006790	MELO3C024753.2	Melon (DHL92) v3.6.1	medwmB120
Cla006790	CsaV3_2G035870	Cucumber (Chinese Long) v3	cucwmB156
Cla006790	Bhi10G001224	Wax gourd	wgowmB382

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006790	Cucurbita maxima (Rimu)	cmawmB535
Cla006790	Cucurbita maxima (Rimu)	cmawmB595
Cla006790	Cucurbita moschata (Rifu)	cmowmB524
Cla006790	Cucurbita moschata (Rifu)	cmowmB588
Cla006790	Cucurbita pepo (Zucchini)	cpewmB292
Cla006790	Cucurbita pepo (Zucchini)	cpewmB728
Cla006790	Silver-seed gourd	carwmB0955
Cla006790	Silver-seed gourd	carwmB1055