Cla006611 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006611
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Metal ion binding protein (AHRD V1 **** D7LYD7_ARALL); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein
Location	Chr11 : 2065266 .. 2065713 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATGCTAATGCAAGTGTTTCTGAGAGAGAAAATTCTTGGAATTTGATTTCTTAGTCCTAATGGGTGTTGTTTTCTGGCCATAGGTGGTGGAACTGAAGGTCTTTTTGCATTGTGAGGAGTGCATCAAGAAGATTCTCAAAGCCATCAAGAAAATACAAGGTTTGTGTTCATTGTCTTTATCAATTTCTCCTGTGGTTTTAAGTTTAATAATCTTCAAAAGAATGAGTAAACCATTTGGGGATTTCGTTATTTTCTATTTTTCTTTCCTTCTCCATTGGCAGATATAGAAACATATAATGTAGATATACAGCTGAACAAGGTGACCGTCACAGGCAATGTCACTGAAGAAGAAGTCATCAAAGTTCTTCAGAAAATTAGGAAAACTGCAATTCCATGGCAAGGTGATGAAGTTGACAATCAAGTCGACAACATTAATTACTAG

mRNA sequence

ATGGCTAATGCTAATGCAAGTGTGGTGGAACTGAAGGTCTTTTTGCATTGTGAGGAGTGCATCAAGAAGATTCTCAAAGCCATCAAGAAAATACAAGATATAGAAACATATAATGTAGATATACAGCTGAACAAGGTGACCGTCACAGGCAATGTCACTGAAGAAGAAGTCATCAAAGTTCTTCAGAAAATTAGGAAAACTGCAATTCCATGGCAAGGTGATGAAGTTGACAATCAAGTCGACAACATTAATTACTAG

Coding sequence (CDS)

ATGGCTAATGCTAATGCAAGTGTGGTGGAACTGAAGGTCTTTTTGCATTGTGAGGAGTGCATCAAGAAGATTCTCAAAGCCATCAAGAAAATACAAGATATAGAAACATATAATGTAGATATACAGCTGAACAAGGTGACCGTCACAGGCAATGTCACTGAAGAAGAAGTCATCAAAGTTCTTCAGAAAATTAGGAAAACTGCAATTCCATGGCAAGGTGATGAAGTTGACAATCAAGTCGACAACATTAATTACTAG

Protein sequence

MANANASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRKTAIPWQGDEVDNQVDNINY

Homology

[Close]

BLAST of Cla006611 vs. Swiss-Prot
Match: ATOX1_ARATH (Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 4.9e-06
Identity = 22/69 (31.88%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          +  V L+V + CE C+  + + + K++ +E+++VDI+  KVTV GNV  + V++ + K  
Sbjct: 2  SQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKTG 61

Query: 66 KTAIPWQGD 75
          K    W+ +
Sbjct: 62 KKTAFWEAE 70

[Close]

BLAST of Cla006611 vs. Swiss-Prot
Match: CCH_ARATH (Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.4e-06
Identity = 23/66 (34.85%), Postives = 37/66 (56.06%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          A  V LKV + C+ C+  + + + K++ +E++++DI+  KVTV GNV  E V + + K  
Sbjct: 2  AQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKTG 61

Query: 66 KTAIPW 72
          K    W
Sbjct: 62 KKTSYW 67

[Close]

BLAST of Cla006611 vs. TrEMBL
Match: A0A0A0K8N1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013360 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-28
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          A+VVELKVFLHCEECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIR
Sbjct: 2  ANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIR 61

Query: 66 KTAIPWQGDEVDNQVDNINY 86
          KTAIPWQ DE    ++NINY
Sbjct: 62 KTAIPWQDDE----LNNINY 77

[Close]

BLAST of Cla006611 vs. TrEMBL
Match: V4LKV1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015175mg PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-23
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          A++VELKV LHC+ECI+KILKAIKKI+DIETY+VD QLNKVTVTGNVTEE+VI+VLQK+R
Sbjct: 2  ANIVELKVNLHCDECIRKILKAIKKIEDIETYDVDTQLNKVTVTGNVTEEQVIRVLQKVR 61

Query: 66 KTAIPWQGDEVDNQVDNIN 85
          KTA+ W   + DNQ   +N
Sbjct: 62 KTAVKW---DQDNQTLYLN 77

[Close]

BLAST of Cla006611 vs. TrEMBL
Match: D7LYD7_ARALL (Metal ion binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_325171 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          A+VVELKV LHC+ECI+KILKAIKKI+DIETY+VD QLNKVTVTGNVTEE+VI+VLQK+R
Sbjct: 2  ANVVELKVNLHCDECIRKILKAIKKIEDIETYDVDTQLNKVTVTGNVTEEQVIRVLQKVR 61

Query: 66 KTAIPWQGD 75
          K A+ W  D
Sbjct: 62 KAAVKWDQD 70

[Close]

BLAST of Cla006611 vs. TrEMBL
Match: A0A0K9RJ29_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066130 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 7  SVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRK 66
          +VVELKV LHC+ECIKKILKAIKKIQDIETYN+D QLNKVTVTGNVTEEEVI+V+ KI K
Sbjct: 3  NVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKIGK 62

Query: 67 TAIPWQGDEVDNQV 81
          TA  W   +  N V
Sbjct: 63 TATTWDDRQQSNSV 76

[Close]

BLAST of Cla006611 vs. TrEMBL
Match: A0A087G506_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G047800 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-22
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          A+VVELKV LHC ECIKKILKAIKKI+DIETY+VD QLNKV VTGNVT+E+VI+VLQK+R
Sbjct: 2  ANVVELKVNLHCNECIKKILKAIKKIEDIETYDVDTQLNKVIVTGNVTDEQVIRVLQKVR 61

Query: 66 KTAIPWQGD 75
          KTA+ W  D
Sbjct: 62 KTAVKWDQD 70

[Close]

BLAST of Cla006611 vs. NCBI nr
Match: gi|449441276|ref|XP_004138408.1| (PREDICTED: copper transport protein ATX1 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          A+VVELKVFLHCEECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIR
Sbjct: 2  ANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIR 61

Query: 66 KTAIPWQGDEVDNQVDNINY 86
          KTAIPWQ DE    ++NINY
Sbjct: 62 KTAIPWQDDE----LNNINY 77

[Close]

BLAST of Cla006611 vs. NCBI nr
Match: gi|659113775|ref|XP_008456748.1| (PREDICTED: copper transport protein CCH [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-27
Identity = 62/73 (84.93%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          A+VVELKVFLHC+ECIKKILKAIKKIQDIETYNVD+++NKV VTGNVT EEVIKVLQKIR
Sbjct: 2  ANVVELKVFLHCDECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIR 61

Query: 66 KTAIPWQGDEVDN 79
          KTA+PWQ DE++N
Sbjct: 62 KTAVPWQDDELNN 74

[Close]

BLAST of Cla006611 vs. NCBI nr
Match: gi|658016577|ref|XP_008343634.1| (PREDICTED: copper transport protein ATX1-like [Malus domestica])

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-23
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 7   SVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRK 66
           +VVELKV LHCEECIKKILKAIKKI+DIETYNVD QLNKVTVTGNVTEEEV+KVLQKI K
Sbjct: 42  NVVELKVGLHCEECIKKILKAIKKIEDIETYNVDPQLNKVTVTGNVTEEEVVKVLQKIGK 101

Query: 67  TAIPWQGDE 76
            A  W+G E
Sbjct: 102 MASTWEGKE 110

[Close]

BLAST of Cla006611 vs. NCBI nr
Match: gi|567170646|ref|XP_006399000.1| (hypothetical protein EUTSA_v10015175mg [Eutrema salsugineum])

HSP 1 Score: 115.5 bits (288), Expect = 4.4e-23
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 6  ASVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIR 65
          A++VELKV LHC+ECI+KILKAIKKI+DIETY+VD QLNKVTVTGNVTEE+VI+VLQK+R
Sbjct: 2  ANIVELKVNLHCDECIRKILKAIKKIEDIETYDVDTQLNKVTVTGNVTEEQVIRVLQKVR 61

Query: 66 KTAIPWQGDEVDNQVDNIN 85
          KTA+ W   + DNQ   +N
Sbjct: 62 KTAVKW---DQDNQTLYLN 77

[Close]

BLAST of Cla006611 vs. NCBI nr
Match: gi|470144090|ref|XP_004307698.1| (PREDICTED: copper transport protein CCH isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1


Query: 7  SVVELKVFLHCEECIKKILKAIKKIQDIETYNVDIQLNKVTVTGNVTEEEVIKVLQKIRK 66
          +VVELKV LHCEECIKKILKAIKKI+DIETY+VD QLNKV VTGNVT E+VI+ LQKI+K
Sbjct: 3  NVVELKVGLHCEECIKKILKAIKKIEDIETYDVDTQLNKVIVTGNVTTEQVIRALQKIKK 62

Query: 67 TAIPW-QGDEVDNQ 80
          TAIPW Q DE  +Q
Sbjct: 63 TAIPWDQQDEATSQ 76

The following BLAST results are available for this feature:

BLAST of Cla006611 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATOX1_ARATH	4.9e-06	31.88	Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2	[more]
CCH_ARATH	6.4e-06	34.85	Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1	[more]

BLAST of Cla006611 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8N1_CUCSA	1.4e-28	83.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013360 PE=4 SV=1	[more]
V4LKV1_EUTSA	3.1e-23	72.15	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015175mg PE=4 SV=1	[more]
D7LYD7_ARALL	1.2e-22	78.26	Metal ion binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_3251...	[more]
A0A0K9RJ29_SPIOL	1.2e-22	75.68	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066130 PE=4 SV=1	[more]
A0A087G506_ARAAL	2.6e-22	78.26	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G047800 PE=4 SV=1	[more]

BLAST of Cla006611 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441276\|ref\|XP_004138408.1\|	2.0e-28	83.75	PREDICTED: copper transport protein ATX1 [Cucumis sativus]	[more]
gi\|659113775\|ref\|XP_008456748.1\|	1.0e-27	84.93	PREDICTED: copper transport protein CCH [Cucumis melo]	[more]
gi\|658016577\|ref\|XP_008343634.1\|	3.4e-23	84.06	PREDICTED: copper transport protein ATX1-like [Malus domestica]	[more]
gi\|567170646\|ref\|XP_006399000.1\|	4.4e-23	72.15	hypothetical protein EUTSA_v10015175mg [Eutrema salsugineum]	[more]
gi\|470144090\|ref\|XP_004307698.1\|	1.3e-22	78.38	PREDICTED: copper transport protein CCH isoform X2 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006121	HMA_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU38750	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU57985	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006611	Cla006611.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU38750	WMU38750	transcribed_cluster
WMU57985	WMU57985	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 12..67 score: 9.7
IPR006121	Heavy metal-associated domain, HMA	PROFILE	PS50846	HMA_2	coord: 15..70 score: 9
IPR006121	Heavy metal-associated domain, HMA	unknown	SSF55008	HMA, heavy metal-associated domain	coord: 9..71 score: 9.29
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 8..71 score: 2.1
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 6..77 score: 2.2
None	No IPR available	PANTHER	PTHR22814:SF60	HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN	coord: 6..77 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006611	Cla97C11G212830	Watermelon (97103) v2	wmwmbB362
Cla006611	Csa6G013360	Cucumber (Chinese Long) v2	cuwmB533
Cla006611	MELO3C019982	Melon (DHL92) v3.5.1	mewmB334
Cla006611	ClCG11G005930	Watermelon (Charleston Gray)	wcgwmB108
Cla006611	CSPI06G01920	Wild cucumber (PI 183967)	cpiwmB552
Cla006611	MELO3C019982.2	Melon (DHL92) v3.6.1	medwmB331
Cla006611	CsaV3_6G002070	Cucumber (Chinese Long) v3	cucwmB558

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006611	Silver-seed gourd	carwmB0024
Cla006611	Silver-seed gourd	carwmB0261
Cla006611	Silver-seed gourd	carwmB0673
Cla006611	Cucumber (Chinese Long) v3	cucwmB369
Cla006611	Watermelon (97103) v2	wmwmbB371
Cla006611	Wax gourd	wgowmB347
Cla006611	Watermelon (97103) v1	wmwmB096
Cla006611	Watermelon (97103) v1	wmwmB155
Cla006611	Cucurbita maxima (Rimu)	cmawmB283
Cla006611	Cucurbita maxima (Rimu)	cmawmB648
Cla006611	Cucurbita maxima (Rimu)	cmawmB737
Cla006611	Cucurbita maxima (Rimu)	cmawmB740
Cla006611	Cucurbita maxima (Rimu)	cmawmB742
Cla006611	Cucurbita moschata (Rifu)	cmowmB274
Cla006611	Cucurbita moschata (Rifu)	cmowmB642
Cla006611	Cucurbita moschata (Rifu)	cmowmB731
Cla006611	Cucurbita moschata (Rifu)	cmowmB734
Cla006611	Wild cucumber (PI 183967)	cpiwmB358
Cla006611	Melon (DHL92) v3.5.1	mewmB600
Cla006611	Watermelon (Charleston Gray)	wcgwmB266
Cla006611	Cucumber (Chinese Long) v2	cuwmB351
Cla006611	Cucurbita pepo (Zucchini)	cpewmB095
Cla006611	Cucurbita pepo (Zucchini)	cpewmB196
Cla006611	Cucurbita pepo (Zucchini)	cpewmB461
Cla006611	Cucurbita pepo (Zucchini)	cpewmB464
Cla006611	Bottle gourd (USVL1VR-Ls)	lsiwmB165
Cla006611	Bottle gourd (USVL1VR-Ls)	lsiwmB277
Cla006611	Cucumber (Gy14) v2	cgybwmB328
Cla006611	Cucumber (Gy14) v2	cgybwmB497