Cla006556 (gene) Watermelon (97103) v1

Overview
NameCla006556
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCalcium-responsive transactivator (AHRD V1 *--- CREST_MOUSE); contains Interpro domain(s) IPR007726 SSXT
LocationChr11 : 1294028 .. 1295720 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTATCTTGATGAGAACAAAAAGTTGATATTGGCCATACTGGACAACCAAAATCTGGGGAAACTAGCTGAATGTGCTCAGTAAGTTACTCCTCTCTCGACACATTGTTATTTCTGGTGTTGTTTCTTGAAATGTTGCATCCCAACCCCATCACAAAGTTGTTGCATTGATTTTATCTAATTGTCTGTGGTTCTCATAATGTATAATCCTAATTCCTAATAGGGTAGGATTTTAGAGATGTGGAGAAATTTAGAGAGAAGGTTGGTATTTGGTGAGGTTATTGCTTCCATTTGGGCGTATGTCACTAGACTGTTTTATAATTATAACACTGATCTTGTTCTTTTGAACTAGAATCAATCCTTTATGTAGTGAGCATTGGATTCCTGTTTATTCCGTGCCCCTTGTACACTTCCACTTTTTCAATGAAATTTCACTTTCTACAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGAAAAAAAAATCAATTGATTTACCATGGTCCATTCATGTTATTTGAAAGTAAGGATGGTGTATCTTGGAGTTTTAAGAGCTGGAGGCGTCCATGGCTGCAGGTTACATCTTGCTACCAATGCTTTGATCTAGATTTGTTATGGATTTCTTTTCCAAGTAAAATCAGATAGGTATTTCAAAATTGATACAAGTTAGTATGTTTGTGAATGTTTGGAGTCAAGGCTACATCATCTACAGGACTATCTTTTAAGGATGGCAGAAGTGTTGCATTTCCTAAAACTATTTTTCATGCGCAGCTTTCAATTTTCCCAATAGGATGTATTTTACTCAATGTAATTTTCATCCCTTTGTACTTTTAGTGTGCATAAGATTGTACTTGAGTTAATTCAATTCTTTAAATAGGTACCAAGCTCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCGCAGGTTGGTTAATAACTAGGCCTCAGTTTCTGCTAATTTCATGACGTATTCTAGTCTGTCTTACCTATGTTAGAATGGTCAGATGGCCCCACATCCTGCCATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCCCAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGCAATCCCCATCAATTACAAGATCCACAGCAGCAACTACACCAACAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATTGGTGGGGCTAACAATGGCATGCATCACCCACATCATACTGAGAGTACCCTTGGGGGTGGTGTTAGTGCTGGAGGCCCTCCTCGAAGTTCAGTGCAAACTGATGGTCGTGGAGGTGGGAAACAGGACTCAGGTGATGTGGGAGGTGCAGGTGCTGATGGTCAGGGGAGCTCGGCTGGTGGTCGTGGCGGTGGTGGTGATGGTGAGGAAGCTAAGTAG

mRNA sequence

ATGCAGTATCTTGATGAGAACAAAAAGTTGATATTGGCCATACTGGACAACCAAAATCTGGGGAAACTAGCTGAATGTGCTCAGTACCAAGCTCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCGCAGAATGGTCAGATGGCCCCACATCCTGCCATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCCCAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGCAATCCCCATCAATTACAAGATCCACAGCAGCAACTACACCAACAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATTGGTGGGGCTAACAATGGCATGCATCACCCACATCATACTGAGAGTACCCTTGGGGGTGGTGTTAGTGCTGGAGGCCCTCCTCGAAGTTCAGTGCAAACTGATGGTCGTGGAGGTGGGAAACAGGACTCAGGTGATGTGGGAGGTGCAGGTGCTGATGGTCAGGGGAGCTCGGCTGGTGGTCGTGGCGGTGGTGGTGATGGTGAGGAAGCTAAGTAG

Coding sequence (CDS)

ATGCAGTATCTTGATGAGAACAAAAAGTTGATATTGGCCATACTGGACAACCAAAATCTGGGGAAACTAGCTGAATGTGCTCAGTACCAAGCTCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCGCAGAATGGTCAGATGGCCCCACATCCTGCCATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCCCAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGCAATCCCCATCAATTACAAGATCCACAGCAGCAACTACACCAACAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATTGGTGGGGCTAACAATGGCATGCATCACCCACATCATACTGAGAGTACCCTTGGGGGTGGTGTTAGTGCTGGAGGCCCTCCTCGAAGTTCAGTGCAAACTGATGGTCGTGGAGGTGGGAAACAGGACTCAGGTGATGTGGGAGGTGCAGGTGCTGATGGTCAGGGGAGCTCGGCTGGTGGTCGTGGCGGTGGTGGTGATGGTGAGGAAGCTAAGTAG

Protein sequence

MQYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQMGLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQGSSAGGRGGGGDGEEAK
Homology
[Close]
BLAST of Cla006556 vs. Swiss-Prot
Match: GIF3_ARATH (GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.1e-52
Identity = 120/207 (57.97%), Postives = 136/207 (65.70%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNG--- 61
           +YLDENKKLI+AIL+NQNLGKLAECAQYQA LQKNLMYLAAIADAQPQ PA    +G   
Sbjct: 28  KYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQPQPPAATLTSGAMT 87

Query: 62  --QMAPHPAMQQ--GGYYMQHPQAAIMAQQ--SGLFPPKVPLQFGNPHQLQDPQQQLHQQ 121
              MAP+P+  Q    Y+MQ  QA  MAQQ   G+FPP+ PLQFG+PHQ  DPQQQL   
Sbjct: 88  PQAMAPNPSSMQPPPSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGSPHQFLDPQQQL--- 147

Query: 122 HQQAMQGQMGLRPIG-GANNGMHHP-HHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSG 181
           HQQAMQG MG+RP+G   NNG+ H  HH E+ L    +  GP       D  GGGK D  
Sbjct: 148 HQQAMQGHMGIRPMGLNNNNGLQHQMHHHETAL--AANNAGP------NDASGGGKPDGT 207

Query: 182 DVGGAGADGQGSSAGGRGGGGDGEEAK 198
           ++  +GADGQG SA   GGG    E K
Sbjct: 208 NMSQSGADGQGGSAARHGGGDAKTEGK 223

[Close]
BLAST of Cla006556 vs. Swiss-Prot
Match: GIF2_ARATH (GRF1-interacting factor 2 OS=Arabidopsis thaliana GN=GIF2 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 110/191 (57.59%), Postives = 121/191 (63.35%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ----- 61
           +YLDENKKLI+AI++NQNLGKLAECAQYQA LQKNLMYLAAIADAQP  P   P      
Sbjct: 29  KYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTPGPSPSTAV 88

Query: 62  NGQMA-PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQ 121
             QMA PH  MQ   Y+MQHPQA+     +G+F P+ PLQFG+P Q QDPQQQ  Q HQQ
Sbjct: 89  AAQMATPHSGMQPPSYFMQHPQAS----PAGIFAPRGPLQFGSPLQFQDPQQQ-QQIHQQ 148

Query: 122 AMQGQMGLRPIGGANNGMHHP-HHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGG 181
           AMQG MG+RP+G  NNGM H     E+ LGG V             G  GGKQD      
Sbjct: 149 AMQGHMGIRPMGMTNNGMQHAMQQPETGLGGNV-------------GLRGGKQD------ 194

Query: 182 AGADGQGSSAG 186
            GADGQG   G
Sbjct: 209 -GADGQGKDDG 194

[Close]
BLAST of Cla006556 vs. Swiss-Prot
Match: GIF1_ARATH (GRF1-interacting factor 1 OS=Arabidopsis thaliana GN=GIF1 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-24
Identity = 78/192 (40.62%), Postives = 101/192 (52.60%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA 61
           QYLDENK LIL I+++QN GKL+ECA+ QA+LQ+NLMYLAAIAD+QPQ P++  Q G   
Sbjct: 27  QYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPSVHSQYGSAG 86

Query: 62  PHPAMQQGG-YYMQHPQAAIMAQ--QSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQ 121
                 +GG +Y+Q  QA    Q  Q  L   +  + +    Q Q P   L  QHQQ   
Sbjct: 87  GGMIQGEGGSHYLQQQQATQQQQMTQQSLMAARSSMLYAQQQQQQQPYATL--QHQQLHH 146

Query: 122 GQMGLRPI--GGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAG 181
            Q+G+     GG ++G+H        L G   AGG           G GK + G   G G
Sbjct: 147 SQLGMSSSSGGGGSSGLH-------ILQG--EAGG-------FHDFGRGKPEMG--SGGG 198

Query: 182 ADGQGSSAGGRG 189
            +G+G S+G  G
Sbjct: 207 GEGRGGSSGDGG 198

[Close]
BLAST of Cla006556 vs. Swiss-Prot
Match: CREST_RAT (Calcium-responsive transcription coactivator OS=Rattus norvegicus GN=Ss18l1 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-14
Identity = 61/166 (36.75%), Postives = 72/166 (43.37%), Query Frame = 1 

Query: 4   LDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADA----QPQAPAMPPQNGQ 63
           LDEN  LI  ILD Q+ GK AEC QYQ  L +NL+YLA IAD+    Q   PA P QN  
Sbjct: 25  LDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMN 84

Query: 64  MAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPL--QFGNPHQLQDPQQQLHQQHQQAM 123
           + P    Q G     HPQ ++    S   PP   +  Q GN           H   QQ  
Sbjct: 85  LGPGALSQSGSSQGLHPQGSLSDTVSTGLPPASLMQGQIGNGPN--------HVSMQQTA 144

Query: 124 QGQMGLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRG 164
           Q  +    +  + +G    H T    G G S  GP   SV   G+G
Sbjct: 145 QSTLPTTSMSMSGSG----HGT----GPGYSHSGPTSQSVPMQGQG 174

[Close]
BLAST of Cla006556 vs. Swiss-Prot
Match: CREST_MOUSE (Calcium-responsive transactivator OS=Mus musculus GN=Ss18l1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.7e-14
Identity = 61/166 (36.75%), Postives = 72/166 (43.37%), Query Frame = 1 

Query: 4   LDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADA----QPQAPAMPPQNGQ 63
           LDEN  LI  ILD Q+ GK AEC QYQ  L +NL+YLA IAD+    Q   PA P QN  
Sbjct: 25  LDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMN 84

Query: 64  MAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPL--QFGNPHQLQDPQQQLHQQHQQAM 123
           + P    Q G     HPQ ++    S   PP   +  Q GN           H   QQ  
Sbjct: 85  LGPGALSQSGSSQGLHPQGSLSDTVSTGLPPASLMQGQIGNGPN--------HVSMQQTA 144

Query: 124 QGQMGLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRG 164
           Q  +    +  + +G    H T    G G S  GP   SV   G+G
Sbjct: 145 QSTLPTTSMSLSGSG----HGT----GPGYSHSGPTSQSVPMQGQG 174

[Close]
BLAST of Cla006556 vs. TrEMBL
Match: A0A0A0K7M8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008810 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.0e-101
Identity = 185/196 (94.39%), Postives = 187/196 (95.41%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA 61
           +YLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ   MA
Sbjct: 26  KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ---MA 85

Query: 62  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 121
           PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM
Sbjct: 86  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 145

Query: 122 GLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQG 181
           GLRPIGGANNGMHHPHHTESTL GG SAGGPPRSS QTDGRG GKQDS DVGGAG DGQG
Sbjct: 146 GLRPIGGANNGMHHPHHTESTL-GGASAGGPPRSSGQTDGRGSGKQDSADVGGAGTDGQG 205

Query: 182 SSAGGRGGGGDGEEAK 198
           S+AGGRGGGGDGEEAK
Sbjct: 206 SAAGGRGGGGDGEEAK 217

[Close]
BLAST of Cla006556 vs. TrEMBL
Match: F6I2X0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02770 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.3e-77
Identity = 153/197 (77.66%), Postives = 165/197 (83.76%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAP-AMPPQNGQM 61
           +YLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAP  MPPQ   M
Sbjct: 26  KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPPTMPPQ---M 85

Query: 62  APHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQ 121
           APHPAMQQGGYYMQHPQAA MAQQ GLFPPK+PLQFGNPHQLQ+  QQL Q  QQAMQGQ
Sbjct: 86  APHPAMQQGGYYMQHPQAAAMAQQPGLFPPKMPLQFGNPHQLQEQAQQLQQLQQQAMQGQ 145

Query: 122 MGLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQ 181
           MG+RP GGANNGM HP H E+TLGGG S+GGPP S+  +D RGGGKQD+ + G +G DGQ
Sbjct: 146 MGMRP-GGANNGM-HPMHPEATLGGG-SSGGPPPSAGLSDARGGGKQDTSEAGASGGDGQ 205

Query: 182 GSSAGGRGGGGDGEEAK 198
           GSSA G GG G+    K
Sbjct: 206 GSSAAGHGGDGESPYLK 216

[Close]
BLAST of Cla006556 vs. TrEMBL
Match: A0A067H3J7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028287mg PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.3e-76
Identity = 153/197 (77.66%), Postives = 161/197 (81.73%), Query Frame = 1 

Query: 1   MQYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQM 60
           MQYLDENKKLILAILDNQNLGKL ECA YQAQLQKNLMYLAAIADAQPQAP MPP   QM
Sbjct: 1   MQYLDENKKLILAILDNQNLGKLTECAHYQAQLQKNLMYLAAIADAQPQAPTMPP---QM 60

Query: 61  APHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQ 120
           APHPAMQ  GYYMQHPQAA MAQQ G+FP K+PLQF NPHQLQDPQQQLHQ   QAMQ Q
Sbjct: 61  APHPAMQASGYYMQHPQAAAMAQQQGIFPQKMPLQFNNPHQLQDPQQQLHQ--HQAMQAQ 120

Query: 121 MGLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQ 180
           MG+RP G  NNGM HP H ES+LGGG S+GGPP +S   D RGG KQD+ + G  GADGQ
Sbjct: 121 MGMRP-GATNNGM-HPMHAESSLGGG-SSGGPPSASGPGDIRGGNKQDASEAGTTGADGQ 180

Query: 181 GSSAGGRGGGGDGEEAK 198
           GSSAGG   GGDGEEAK
Sbjct: 181 GSSAGGH--GGDGEEAK 187

[Close]
BLAST of Cla006556 vs. TrEMBL
Match: V4TWR5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022233mg PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 8.0e-75
Identity = 151/196 (77.04%), Postives = 160/196 (81.63%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA 61
           +YLDENKKLILAILDNQNLGKL ECA YQAQLQKNLMYLAAIADAQPQAP MPPQ   MA
Sbjct: 26  KYLDENKKLILAILDNQNLGKLTECAHYQAQLQKNLMYLAAIADAQPQAPTMPPQ---MA 85

Query: 62  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 121
           PHPAMQ  GYYMQHPQAA MAQQ G+FP K+PLQF NPHQLQDPQQQLHQ   QAMQ QM
Sbjct: 86  PHPAMQASGYYMQHPQAAAMAQQQGIFPQKMPLQFNNPHQLQDPQQQLHQ--HQAMQAQM 145

Query: 122 GLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQG 181
           G+RP G  NNGM HP H ES+LGGG S+GGPP +S   D RGG KQD+ + G  GADGQG
Sbjct: 146 GMRP-GATNNGM-HPMHAESSLGGG-SSGGPPSASGPGDIRGGNKQDASEAGTTGADGQG 205

Query: 182 SSAGGRGGGGDGEEAK 198
           SSAGG   GGDGEEAK
Sbjct: 206 SSAGGH--GGDGEEAK 211

[Close]
BLAST of Cla006556 vs. TrEMBL
Match: A0A067HFB6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028287mg PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 8.0e-75
Identity = 151/196 (77.04%), Postives = 160/196 (81.63%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA 61
           +YLDENKKLILAILDNQNLGKL ECA YQAQLQKNLMYLAAIADAQPQAP MPPQ   MA
Sbjct: 26  KYLDENKKLILAILDNQNLGKLTECAHYQAQLQKNLMYLAAIADAQPQAPTMPPQ---MA 85

Query: 62  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 121
           PHPAMQ  GYYMQHPQAA MAQQ G+FP K+PLQF NPHQLQDPQQQLHQ   QAMQ QM
Sbjct: 86  PHPAMQASGYYMQHPQAAAMAQQQGIFPQKMPLQFNNPHQLQDPQQQLHQ--HQAMQAQM 145

Query: 122 GLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQG 181
           G+RP G  NNGM HP H ES+LGGG S+GGPP +S   D RGG KQD+ + G  GADGQG
Sbjct: 146 GMRP-GATNNGM-HPMHAESSLGGG-SSGGPPSASGPGDIRGGNKQDASEAGTTGADGQG 205

Query: 182 SSAGGRGGGGDGEEAK 198
           SSAGG   GGDGEEAK
Sbjct: 206 SSAGGH--GGDGEEAK 211

[Close]
BLAST of Cla006556 vs. NCBI nr
Match: gi|778709384|ref|XP_011656394.1| (PREDICTED: GRF1-interacting factor 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 3.7e-105
Identity = 188/196 (95.92%), Postives = 190/196 (96.94%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA 61
           +YLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA
Sbjct: 26  KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA 85

Query: 62  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 121
           PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM
Sbjct: 86  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 145

Query: 122 GLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQG 181
           GLRPIGGANNGMHHPHHTESTL GG SAGGPPRSS QTDGRG GKQDS DVGGAG DGQG
Sbjct: 146 GLRPIGGANNGMHHPHHTESTL-GGASAGGPPRSSGQTDGRGSGKQDSADVGGAGTDGQG 205

Query: 182 SSAGGRGGGGDGEEAK 198
           S+AGGRGGGGDGEEAK
Sbjct: 206 SAAGGRGGGGDGEEAK 220

[Close]
BLAST of Cla006556 vs. NCBI nr
Match: gi|449441354|ref|XP_004138447.1| (PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 1.4e-101
Identity = 185/196 (94.39%), Postives = 187/196 (95.41%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA 61
           +YLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ   MA
Sbjct: 26  KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ---MA 85

Query: 62  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 121
           PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM
Sbjct: 86  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 145

Query: 122 GLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQG 181
           GLRPIGGANNGMHHPHHTESTL GG SAGGPPRSS QTDGRG GKQDS DVGGAG DGQG
Sbjct: 146 GLRPIGGANNGMHHPHHTESTL-GGASAGGPPRSSGQTDGRGSGKQDSADVGGAGTDGQG 205

Query: 182 SSAGGRGGGGDGEEAK 198
           S+AGGRGGGGDGEEAK
Sbjct: 206 SAAGGRGGGGDGEEAK 217

[Close]
BLAST of Cla006556 vs. NCBI nr
Match: gi|659081580|ref|XP_008441405.1| (PREDICTED: GRF1-interacting factor 3 [Cucumis melo])

HSP 1 Score: 374.0 bits (959), Expect = 1.6e-100
Identity = 183/196 (93.37%), Postives = 186/196 (94.90%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMA 61
           +YLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ   MA
Sbjct: 26  KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ---MA 85

Query: 62  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 121
           PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM
Sbjct: 86  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQM 145

Query: 122 GLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQG 181
           GLRPIGGANNGMHHPHHTESTL G  SAGGPPRSS QTDGRG GKQDS DVGGAG DGQG
Sbjct: 146 GLRPIGGANNGMHHPHHTESTL-GSASAGGPPRSSGQTDGRGSGKQDSADVGGAGTDGQG 205

Query: 182 SSAGGRGGGGDGEEAK 198
           ++AGGRGGGGDGEEAK
Sbjct: 206 NAAGGRGGGGDGEEAK 217

[Close]
BLAST of Cla006556 vs. NCBI nr
Match: gi|225453588|ref|XP_002263524.1| (PREDICTED: GRF1-interacting factor 3 [Vitis vinifera])

HSP 1 Score: 297.4 bits (760), Expect = 1.9e-77
Identity = 153/197 (77.66%), Postives = 165/197 (83.76%), Query Frame = 1 

Query: 2   QYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAP-AMPPQNGQM 61
           +YLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAP  MPPQ   M
Sbjct: 26  KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPPTMPPQ---M 85

Query: 62  APHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQ 121
           APHPAMQQGGYYMQHPQAA MAQQ GLFPPK+PLQFGNPHQLQ+  QQL Q  QQAMQGQ
Sbjct: 86  APHPAMQQGGYYMQHPQAAAMAQQPGLFPPKMPLQFGNPHQLQEQAQQLQQLQQQAMQGQ 145

Query: 122 MGLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQ 181
           MG+RP GGANNGM HP H E+TLGGG S+GGPP S+  +D RGGGKQD+ + G +G DGQ
Sbjct: 146 MGMRP-GGANNGM-HPMHPEATLGGG-SSGGPPPSAGLSDARGGGKQDTSEAGASGGDGQ 205

Query: 182 GSSAGGRGGGGDGEEAK 198
           GSSA G GG G+    K
Sbjct: 206 GSSAAGHGGDGESPYLK 216

[Close]
BLAST of Cla006556 vs. NCBI nr
Match: gi|641867894|gb|KDO86578.1| (hypothetical protein CISIN_1g028287mg [Citrus sinensis])

HSP 1 Score: 291.6 bits (745), Expect = 1.0e-75
Identity = 153/197 (77.66%), Postives = 161/197 (81.73%), Query Frame = 1 

Query: 1   MQYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQM 60
           MQYLDENKKLILAILDNQNLGKL ECA YQAQLQKNLMYLAAIADAQPQAP MPP   QM
Sbjct: 1   MQYLDENKKLILAILDNQNLGKLTECAHYQAQLQKNLMYLAAIADAQPQAPTMPP---QM 60

Query: 61  APHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQLHQQHQQAMQGQ 120
           APHPAMQ  GYYMQHPQAA MAQQ G+FP K+PLQF NPHQLQDPQQQLHQ   QAMQ Q
Sbjct: 61  APHPAMQASGYYMQHPQAAAMAQQQGIFPQKMPLQFNNPHQLQDPQQQLHQ--HQAMQAQ 120

Query: 121 MGLRPIGGANNGMHHPHHTESTLGGGVSAGGPPRSSVQTDGRGGGKQDSGDVGGAGADGQ 180
           MG+RP G  NNGM HP H ES+LGGG S+GGPP +S   D RGG KQD+ + G  GADGQ
Sbjct: 121 MGMRP-GATNNGM-HPMHAESSLGGG-SSGGPPSASGPGDIRGGNKQDASEAGTTGADGQ 180

Query: 181 GSSAGGRGGGGDGEEAK 198
           GSSAGG   GGDGEEAK
Sbjct: 181 GSSAGGH--GGDGEEAK 187

The following BLAST results are available for this feature:
BLAST of Cla006556 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GIF3_ARATH6.1e-5257.97GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=1[more]
GIF2_ARATH3.0e-4657.59GRF1-interacting factor 2 OS=Arabidopsis thaliana GN=GIF2 PE=1 SV=1[more]
GIF1_ARATH5.4e-2440.63GRF1-interacting factor 1 OS=Arabidopsis thaliana GN=GIF1 PE=1 SV=1[more]
CREST_RAT6.6e-1436.75Calcium-responsive transcription coactivator OS=Rattus norvegicus GN=Ss18l1 PE=1... [more]
CREST_MOUSE8.7e-1436.75Calcium-responsive transactivator OS=Mus musculus GN=Ss18l1 PE=1 SV=1[more]
BLAST of Cla006556 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7M8_CUCSA1.0e-10194.39Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008810 PE=4 SV=1[more]
F6I2X0_VITVI1.3e-7777.66Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02770 PE=4 SV=... [more]
A0A067H3J7_CITSI7.3e-7677.66Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028287mg PE=4 SV=1[more]
V4TWR5_9ROSI8.0e-7577.04Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022233mg PE=4 SV=1[more]
A0A067HFB6_CITSI8.0e-7577.04Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028287mg PE=4 SV=1[more]
BLAST of Cla006556 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778709384|ref|XP_011656394.1|3.7e-10595.92PREDICTED: GRF1-interacting factor 2 isoform X1 [Cucumis sativus][more]
gi|449441354|ref|XP_004138447.1|1.4e-10194.39PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis sativus][more]
gi|659081580|ref|XP_008441405.1|1.6e-10093.37PREDICTED: GRF1-interacting factor 3 [Cucumis melo][more]
gi|225453588|ref|XP_002263524.1|1.9e-7777.66PREDICTED: GRF1-interacting factor 3 [Vitis vinifera][more]
gi|641867894|gb|KDO86578.1|1.0e-7577.66hypothetical protein CISIN_1g028287mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007726SS18_fam
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:1903506 regulation of nucleic acid-templated transcription
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0008283 cell proliferation
biological_process GO:0048366 leaf development
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003713 transcription coactivator activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU73269watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006556Cla006556.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU73269WMU73269transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007726SS18 familyPANTHERPTHR23107SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEINcoord: 2..194
score: 1.4
IPR007726SS18 familyPFAMPF05030SSXTcoord: 2..49
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006556Cla97C11G213520Watermelon (97103) v2wmwmbB362
Cla006556Csa6G008810Cucumber (Chinese Long) v2cuwmB533
Cla006556MELO3C008248Melon (DHL92) v3.5.1mewmB328
Cla006556ClCG11G006560Watermelon (Charleston Gray)wcgwmB108
Cla006556CSPI06G01310Wild cucumber (PI 183967)cpiwmB552
Cla006556Cucsa.136290Cucumber (Gy14) v1cgywmB234
Cla006556Cp4.1LG13g11030Cucurbita pepo (Zucchini)cpewmB196
Cla006556CsGy6G001360Cucumber (Gy14) v2cgybwmB497
Cla006556MELO3C008248.2Melon (DHL92) v3.6.1medwmB325
Cla006556Carg02101Silver-seed gourdcarwmB0261
Cla006556CsaV3_6G001440Cucumber (Chinese Long) v3cucwmB558
Cla006556Bhi04G001933Wax gourdwgowmB347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006556Cucumber (Chinese Long) v3cucwmB084
Cla006556Cucumber (Chinese Long) v3cucwmB284
Cla006556Cucumber (Chinese Long) v3cucwmB459
Cla006556Watermelon (97103) v2wmwmbB357
Cla006556Watermelon (97103) v2wmwmbB380
Cla006556Watermelon (97103) v1wmwmB055
Cla006556Watermelon (97103) v1wmwmB096
Cla006556Watermelon (97103) v1wmwmB113
Cla006556Watermelon (97103) v1wmwmB155
Cla006556Cucumber (Gy14) v1cgywmB256
Cla006556Cucumber (Gy14) v1cgywmB312
Cla006556Cucumber (Gy14) v1cgywmB340
Cla006556Cucurbita maxima (Rimu)cmawmB249
Cla006556Cucurbita maxima (Rimu)cmawmB283
Cla006556Cucurbita maxima (Rimu)cmawmB648
Cla006556Cucurbita maxima (Rimu)cmawmB737
Cla006556Cucurbita maxima (Rimu)cmawmB740
Cla006556Cucurbita maxima (Rimu)cmawmB742
Cla006556Cucurbita maxima (Rimu)cmawmB809
Cla006556Cucurbita maxima (Rimu)cmawmB846
Cla006556Cucurbita moschata (Rifu)cmowmB238
Cla006556Cucurbita moschata (Rifu)cmowmB274
Cla006556Cucurbita moschata (Rifu)cmowmB642
Cla006556Cucurbita moschata (Rifu)cmowmB731
Cla006556Cucurbita moschata (Rifu)cmowmB734
Cla006556Cucurbita moschata (Rifu)cmowmB737
Cla006556Cucurbita moschata (Rifu)cmowmB800
Cla006556Cucurbita moschata (Rifu)cmowmB835
Cla006556Wild cucumber (PI 183967)cpiwmB276
Cla006556Wild cucumber (PI 183967)cpiwmB448
Cla006556Melon (DHL92) v3.5.1mewmB385
Cla006556Watermelon (Charleston Gray)wcgwmB080
Cla006556Watermelon (Charleston Gray)wcgwmB266
Cla006556Watermelon (Charleston Gray)wcgwmB392
Cla006556Cucumber (Chinese Long) v2cuwmB073
Cla006556Cucumber (Chinese Long) v2cuwmB275
Cla006556Cucurbita pepo (Zucchini)cpewmB461
Cla006556Cucurbita pepo (Zucchini)cpewmB464
Cla006556Cucurbita pepo (Zucchini)cpewmB467
Cla006556Cucurbita pepo (Zucchini)cpewmB621
Cla006556Cucurbita pepo (Zucchini)cpewmB852
Cla006556Bottle gourd (USVL1VR-Ls)lsiwmB276
Cla006556Bottle gourd (USVL1VR-Ls)lsiwmB277
Cla006556Bottle gourd (USVL1VR-Ls)lsiwmB338
Cla006556Cucumber (Gy14) v2cgybwmB257
Cla006556Cucumber (Gy14) v2cgybwmB407
Cla006556Melon (DHL92) v3.6.1medwmB176
Cla006556Melon (DHL92) v3.6.1medwmB379
Cla006556Silver-seed gourdcarwmB0024
Cla006556Silver-seed gourdcarwmB0153
Cla006556Silver-seed gourdcarwmB0583
Cla006556Silver-seed gourdcarwmB0673
Cla006556Silver-seed gourdcarwmB1001