Carg02101 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02101
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GRF1-interacting factor-like protein
Location	Cucurbita_argyrosperma_scaffold_007 : 71694 .. 74498 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGAAACTGTGGTTCAGCCTCTAACCCGCGCCGTTAGTGAGATCGCGCCGCCGCTGCTCATTCAGATCCTCAAGGTTTTATTTTTTTTTTTTTTTTTATTTTGTTTTGTTGGGTTATGTTGGTCTGTTCTCTTTACTCGCGGGGAAGGAAATGAATAATTTTTGTTTTTGTTTTTGTTGATTTCTTCTTCGACCAGTGTTCACTAGTCTAAATGAAAACATATAACTAAGAGGAAAAACAAGATTGAATCAATGAATAAAAAAGGAACAAAACATATCTTTCTTGTCACAAAATAGAAAGCTAATGAGTTTTGAGTTTGATTGAACTATCTATGCTTATGAACTAACATAGGGGCAGAATTAGAAGCATATTTTGATTTATTCAGGGGCTCCAAACAGGGGGTTAAACCTCAGAAACCTATATTAACGTAATAGGTTCTTTTTCTTTGCTTTTGAATCTCTTCTGACTTGGGAATTCTCTTTTCCAAGAGGTAGGGCTAAGGTTTATATTTAGGAAAGCCAAAGATGCAGCAACCACCGCAAATGATGCCCATGATGCCTTCATTCCCCCCCACCAATATCACCACCGAACAGATTCAAAAGGTCGCATTTCCTCTTCCTTCTTTACTTCCTACTCAAACGCCCATTTTTGCGCATATGGTATTGTAGTGATTGCTCGATGGTGTGTTTGATTTTATGGAACTTTGTTTATGGCCCTGGTTGTGATAGTGAAAGACAAATGCTTTTGTTCTTGATAAGTTAATAGCTTCAACTTGATTGGCTCCTTCAATGACTAGAGGTTTGCAGATGGAAAGAACTAATAACGCAGCCTTTGTAACGTAATGGAGATCATTATTTATTTATTTTAAACTCTTTCCAATGACTTCCTGAATCATAGGAAGGAAACATACGTTGGTTCTCTCGTTATTCTTTTTTTCAAGCTTGTATCTTCATCTCTTGTTAGTTAGGGGTCAGGCCACTAGGTTACTATTCTTGGTTACTTGAAATGTTCTATAATGAATTGATTTGTTTAATTAAGAATTAGAAATGACAAGTAAAATTCTGTTGGAAACATGGTTCCGGCCTGGGGATTATGTTTAGTTGTAGTGCTGGACTGCTAGTTACAAATTTGATATTGAGCTGGGAGATCCTGTGGTTTGTGATCAAGAGCTTTTCTTGACATTTGCTTTCCTCTGTTGTATAAGGTTCGAACTCTGTTTTCTTTCTTGGATCTCTGGATATTTGAAGTCATGGTGTTTATCGAAATGAACTAATATGAATTTAGATTTAATTTAGTGTTACATAATTGATTCTTGTTAAGACGTTTGAGATAAAGTTATCAATAATAATAGTTTCTACCACGTGCAGTATCTTGATGAAAACAAAAAGTTGATATTGGCCATACTGGACAACCAAAATCTGGGGAAACTAGCTGAATGTGCTCAGTAAGTTACCCATCTCCGAACATTGTTGTGTGTGGCGTTGATTCTTGAAATGATTCATCGCAAATTTGGTGCATTGATTTTATGTAATTGCCTGTGGTTCATCGCAAAGTAAGGTTGATGTATCTTGGAGCTTAGAAGCTGGAGGTGTCTATGGGTGCAGGTTTTCTTTTTATATGCGCCTGTAAATCTTGCTACTAAGTCTGCGTTTTATAGTTAGGGATCCAGATCTAATATGCATTTCTGATCTTAAAATCAGGTAGGCACTTCATAATTGATACAAGGTTGTATTTCTATGCACTTGTGTGATTTATGGACTGCTCATGTGTTTCACCTCCTAAAACTATTTGACATATGTGGCTTTCAATTTTCCCAATAGGATGCATGATACTTGAGCTTTATTCCATCCCTTATAGTGTTGTACTCGACTTAATGCGATTCATTTGATTAGGTACCAAGCTCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCCGCTATGCCTCCACAGGTTGGTTATTAACTAGGCCTCTGTGTTCTGCTAATTTCATGACGTGTTATAGTCTTTTTTCTACTTACCTATGTTATAATGGTCAGATGGCCCCACATCCTGCCATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATGATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTCCCATTGCAGTTTGGCAACCCCCATCAGTTACAAGATCAGCAGCAGCAACTACACCAACAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATTGGTGGAGCTAACAATGGCATGCATCACCCACATCATACTGAGGGTACCCTTGGAGGTGCTAGTGCTGGCGGCCCTGCTCGAAGTTCAGGGCAAACCGATGGTCGTGGAGGTGGCAAGCAGGACTCCGCTGATGTGGGAGGTACAGGTGCTGATGCTCAGGGGAACTCAGCTGGTGGTCGGGGCGGTGGTGGTGATGGGGAGGAAGCTAAGTAATGCAGCCTTGTGACTGCTTCCACATCCACGTGTGGCTGTTTATAGTAGGTGCTTCGTACGATAGAACTTCCATGCTTTGGTGATATTAGTAGATCGAGTAAAGAACCCAAAGTTGTTGATTGTTTTAGTTTAAGCAGAATATCTAGGTACGTTGTGTATGTGTTGTAAGAGTCTTGATATGCATTTACATTCATTGCTTGGCAATAGAAGGGAGACGAGGTAGTGGTAGACTGGTCTGGACCAGTACTTTCACTTTTATCTCATTTTGTAAACAACTTGTGAAAGATCAGTAGGATTAGTTATAATATAATTCTACTGAAGGTTTTC

mRNA sequence

TCGGAAACTGTGGTTCAGCCTCTAACCCGCGCCGTTAGTGAGATCGCGCCGCCGCTGCTCATTCAGATCCTCAAGTATCTTGATGAAAACAAAAAGTTGATATTGGCCATACTGGACAACCAAAATCTGGGGAAACTAGCTGAATGTGCTCAGTACCAAGCTCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCCGCTATGCCTCCACAGATGGCCCCACATCCTGCCATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATGATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTCCCATTGCAGTTTGGCAACCCCCATCAGTTACAAGATCAGCAGCAGCAACTACACCAACAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATTGGTGGAGCTAACAATGGCATGCATCACCCACATCATACTGAGGGTACCCTTGGAGGTGCTAGTGCTGGCGGCCCTGCTCGAAGTTCAGGGCAAACCGATGGTCGTGGAGGTGGCAAGCAGGACTCCGCTGATGTGGGAGGTACAGGTGCTGATGCTCAGGGGAACTCAGCTGGTGGTCGGGGCGGTGGTGGTGATGGGGAGGAAGCTAAGTAATGCAGCCTTGTGACTGCTTCCACATCCACGTGTGGCTGTTTATAGTAGGTGCTTCGTACGATAGAACTTCCATGCTTTGGTGATATTAGTAGATCGAGTAAAGAACCCAAAGTTGTTGATTGTTTTAGTTTAAGCAGAATATCTAGGTACGTTGTGTATGTGTTGTAAGAGTCTTGATATGCATTTACATTCATTGCTTGGCAATAGAAGGGAGACGAGGTAGTGGTAGACTGGTCTGGACCAGTACTTTCACTTTTATCTCATTTTGTAAACAACTTGTGAAAGATCAGTAGGATTAGTTATAATATAATTCTACTGAAGGTTTTC

Coding sequence (CDS)

TCGGAAACTGTGGTTCAGCCTCTAACCCGCGCCGTTAGTGAGATCGCGCCGCCGCTGCTCATTCAGATCCTCAAGTATCTTGATGAAAACAAAAAGTTGATATTGGCCATACTGGACAACCAAAATCTGGGGAAACTAGCTGAATGTGCTCAGTACCAAGCTCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCCGCTATGCCTCCACAGATGGCCCCACATCCTGCCATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATGATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTCCCATTGCAGTTTGGCAACCCCCATCAGTTACAAGATCAGCAGCAGCAACTACACCAACAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATTGGTGGAGCTAACAATGGCATGCATCACCCACATCATACTGAGGGTACCCTTGGAGGTGCTAGTGCTGGCGGCCCTGCTCGAAGTTCAGGGCAAACCGATGGTCGTGGAGGTGGCAAGCAGGACTCCGCTGATGTGGGAGGTACAGGTGCTGATGCTCAGGGGAACTCAGCTGGTGGTCGGGGCGGTGGTGGTGATGGGGAGGAAGCTAAGTAA

Protein sequence

SETVVQPLTRAVSEIAPPLLIQILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMAPHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDQQQQLHQQHQQAMQGQMGLRPIGGANNGMHHPHHTEGTLGGASAGGPARSSGQTDGRGGGKQDSADVGGTGADAQGNSAGGRGGGGDGEEAK

Homology

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BLAST of Carg02101 vs. NCBI nr
Match: XP_022939603.1 (GRF1-interacting factor 3-like [Cucurbita moschata] >XP_022939605.1 GRF1-interacting factor 3-like [Cucurbita moschata])

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 82

Query: 82  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 141
           PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX
Sbjct: 83  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192
           XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV
Sbjct: 143 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192

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BLAST of Carg02101 vs. NCBI nr
Match: XP_022993755.1 (GRF1-interacting factor 3-like [Cucurbita maxima] >XP_022993756.1 GRF1-interacting factor 3-like [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 1.8e-56
Identity = 160/168 (95.24%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 82

Query: 82  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 141
           PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQD XXXXXXXXXXXXXXXX
Sbjct: 83  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDQXXXXXXXXXXXXXXXX 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSA 190
           XXXXXXXXXXXXXXXXXX      ASAGGPARSSGQTDGRGGGKQDSA
Sbjct: 143 XXXXXXXXXXXXXXXXXXEATLGGASAGGPARSSGQTDGRGGGKQDSA 190

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BLAST of Carg02101 vs. NCBI nr
Match: XP_004138447.1 (PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis sativus] >KGN45750.1 hypothetical protein Csa_6G008810 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 6.7e-56
Identity = 151/170 (88.82%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 82

Query: 82  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 141
           PHPAMQQGGYYMQHPQAA+MAQQSGLFPPKVPLQFGNPHQLQD    XXXXXXXXXXXXX
Sbjct: 83  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQXXXXXXXXXXXXX 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192
           XXX     XXXXXXXXXX      ASAGGP RSSGQTDGRG GKQDSADV
Sbjct: 143 XXXPIGGAXXXXXXXXXXESTLGGASAGGPPRSSGQTDGRGSGKQDSADV 192

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BLAST of Carg02101 vs. NCBI nr
Match: XP_016899447.1 (PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 6.7e-56
Identity = 158/170 (92.94%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 82

Query: 82  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 141
           PHPAMQQGGYYMQHPQAA+MAQQSGLFPPKVPLQFGNPHQLQD   XXXXXXXXXXXXXX
Sbjct: 83  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQXXXXXXXXXXXXXX 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192
           XXXXXXXXXXXXXXXXXXX     ASAGGP RSSGQTDGRG GKQDSADV
Sbjct: 143 XXXXXXXXXXXXXXXXXXXSTLGSASAGGPPRSSGQTDGRGSGKQDSADV 192

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BLAST of Carg02101 vs. NCBI nr
Match: XP_011656394.1 (PREDICTED: GRF1-interacting factor 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 2.8e-54
Identity = 150/173 (86.71%), Postives = 151/173 (87.28%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPP--- 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPP   
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNG 82

Query: 82  QMAPHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXX 141
           QMAPHPAMQQGGYYMQHPQAA+MAQQSGLFPPKVPLQFGNPHQLQD    XXXXXXXXXX
Sbjct: 83  QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQXXXXXXXXXX 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192
           XXXXXX      XXXXXXXXX      ASAGGP RSSGQTDGRG GKQDSADV
Sbjct: 143 XXXXXXPIGGANXXXXXXXXXESTLGGASAGGPPRSSGQTDGRGSGKQDSADV 195

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BLAST of Carg02101 vs. TAIR10
Match: AT4G00850.1 (GRF1-interacting factor 3)

HSP 1 Score: 124.8 bits (312), Expect = 6.5e-29
Identity = 77/115 (66.96%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAP------- 81
           QI KYLDENKKLI+AIL+NQNLGKLAECAQYQA LQKNLMYLAAIADAQPQ P       
Sbjct: 25  QIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQPQPPAATLTSG 84

Query: 82  AMPPQ-MAPH--PAMQQGGYYMQHPQAAMMAQQ--SGLFPPKVPLQFGNPHQLQD 125
           AM PQ MAP+         Y+MQ  QA  MAQQ   G+FPP+ PLQFG+PHQ  D
Sbjct: 85  AMTPQAMAPNXXXXXXXXSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGSPHQFLD 139

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BLAST of Carg02101 vs. TAIR10
Match: AT1G01160.2 (GRF1-interacting factor 2)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-17
Identity = 55/97 (56.70%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 24  LKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAI--------ADAQPQAPA 83
           L YLDENKKLI+AI++NQNLGKLAECAQYQA LQKNLMYLAAI                 
Sbjct: 62  LDYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIXXXXXXXXXXXXXXXXX 121

Query: 84  MPPQMA-PHPAMQQGGYYMQHPQAAMMAQQSGLFPPK 112
              QMA PH  MQ   Y+MQHPQA+     +G+F P+
Sbjct: 122 XXXQMATPHSGMQPPSYFMQHPQAS----PAGIFAPR 154

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BLAST of Carg02101 vs. TAIR10
Match: AT5G28640.1 (SSXT family protein)

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-13
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 23 ILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ 80
          I +YLDENK LIL I+++QN GKL+ECA+ QA+LQ+NLMYLAAIAD+QPQ P++  Q
Sbjct: 25 IQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPSVHSQ 81

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BLAST of Carg02101 vs. Swiss-Prot
Match: sp|Q93VH6|GIF3_ARATH (GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 77/115 (66.96%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAP------- 81
           QI KYLDENKKLI+AIL+NQNLGKLAECAQYQA LQKNLMYLAAIADAQPQ P       
Sbjct: 25  QIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQPQPPAATLTSG 84

Query: 82  AMPPQ-MAPH--PAMQQGGYYMQHPQAAMMAQQ--SGLFPPKVPLQFGNPHQLQD 125
           AM PQ MAP+         Y+MQ  QA  MAQQ   G+FPP+ PLQFG+PHQ  D
Sbjct: 85  AMTPQAMAPNXXXXXXXXSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGSPHQFLD 139

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BLAST of Carg02101 vs. Swiss-Prot
Match: sp|Q9MAL9|GIF2_ARATH (GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-17
Identity = 57/99 (57.58%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAI--------ADAQPQA 81
           QI KYLDENKKLI+AI++NQNLGKLAECAQYQA LQKNLMYLAAI               
Sbjct: 26  QIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIXXXXXXXXXXXXXXX 85

Query: 82  PAMPPQMA-PHPAMQQGGYYMQHPQAAMMAQQSGLFPPK 112
                QMA PH  MQ   Y+MQHPQA+     +G+F P+
Sbjct: 86  XXXXXQMATPHSGMQPPSYFMQHPQAS----PAGIFAPR 120

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BLAST of Carg02101 vs. Swiss-Prot
Match: sp|Q8L8A5|GIF1_ARATH (GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-12
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 23 ILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQ 80
          I +YLDENK LIL I+++QN GKL+ECA+ QA+LQ+NLMYLAAIAD+QPQ P++  Q
Sbjct: 25 IQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPSVHSQ 81

[Close]

BLAST of Carg02101 vs. Swiss-Prot
Match: sp|Q8BW22|CREST_MOUSE (Calcium-responsive transactivator OS=Mus musculus OX=10090 GN=Ss18l1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 44/100 (44.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 23  ILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADA----QPQAPAMPP 82
           I K LDEN  LI  ILD Q+ GK AEC QYQ  L +NL+YLA IAD+    Q   PA P 
Sbjct: 21  IQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPT 80

Query: 83  Q---MAPHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQ 116
           Q   + P    Q G     HPQ ++    S   PP   +Q
Sbjct: 81  QNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPPASLMQ 120

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BLAST of Carg02101 vs. Swiss-Prot
Match: sp|Q91XJ0|CREST_RAT (Calcium-responsive transcription coactivator OS=Rattus norvegicus OX=10116 GN=Ss18l1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 44/100 (44.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 23  ILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADA----QPQAPAMPP 82
           I K LDEN  LI  ILD Q+ GK AEC QYQ  L +NL+YLA IAD+    Q   PA P 
Sbjct: 21  IQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPT 80

Query: 83  Q---MAPHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQ 116
           Q   + P    Q G     HPQ ++    S   PP   +Q
Sbjct: 81  QNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPPASLMQ 120

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BLAST of Carg02101 vs. TrEMBL
Match: tr|A0A1S4DTX1|A0A1S4DTX1_CUCME (GRF1-interacting factor 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.4e-56
Identity = 158/170 (92.94%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 82

Query: 82  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 141
           PHPAMQQGGYYMQHPQAA+MAQQSGLFPPKVPLQFGNPHQLQD   XXXXXXXXXXXXXX
Sbjct: 83  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQXXXXXXXXXXXXXX 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192
           XXXXXXXXXXXXXXXXXXX     ASAGGP RSSGQTDGRG GKQDSADV
Sbjct: 143 XXXXXXXXXXXXXXXXXXXSTLGSASAGGPPRSSGQTDGRGSGKQDSADV 192

[Close]

BLAST of Carg02101 vs. TrEMBL
Match: tr|A0A0A0K7M8|A0A0A0K7M8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008810 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.4e-56
Identity = 151/170 (88.82%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 82

Query: 82  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 141
           PHPAMQQGGYYMQHPQAA+MAQQSGLFPPKVPLQFGNPHQLQD    XXXXXXXXXXXXX
Sbjct: 83  PHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQXXXXXXXXXXXXX 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192
           XXX     XXXXXXXXXX      ASAGGP RSSGQTDGRG GKQDSADV
Sbjct: 143 XXXPIGGAXXXXXXXXXXESTLGGASAGGPPRSSGQTDGRGSGKQDSADV 192

[Close]

BLAST of Carg02101 vs. TrEMBL
Match: tr|A0A1S4DTY1|A0A1S4DTY1_CUCME (GRF1-interacting factor 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 157/173 (90.75%), Postives = 158/173 (91.33%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPP--- 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPP   
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNG 82

Query: 82  QMAPHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXX 141
           QMAPHPAMQQGGYYMQHPQAA+MAQQSGLFPPKVPLQFGNPHQLQD    XXXXXXXXXX
Sbjct: 83  QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQXXXXXXXXXX 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192
           XXXXXXXXXXXXXXXXXXXXXX     ASAGGP RSSGQTDGRG GKQDSADV
Sbjct: 143 XXXXXXXXXXXXXXXXXXXXXXSTLGSASAGGPPRSSGQTDGRGSGKQDSADV 195

[Close]

BLAST of Carg02101 vs. TrEMBL
Match: tr|A0A2C9VUL6|A0A2C9VUL6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G018100 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.0e-44
Identity = 104/169 (61.54%), Postives = 113/169 (66.86%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAP MPPQ++
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPTMPPQVS 82

Query: 82  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 141
           PHPAMQQG YYMQHPQAA MAQQSG+FPPK+PLQF NPHQ+QD                 
Sbjct: 83  PHPAMQQGAYYMQHPQAAAMAQQSGIFPPKMPLQFNNPHQMQDPQQLHQAAIQGQMGMRP 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSAD 191
                                       GP+ ++G  D RGG KQD+ D
Sbjct: 143 MGANNGMHPMHTEAAH---------GTSGPSATAGSNDVRGGNKQDATD 182

[Close]

BLAST of Carg02101 vs. TrEMBL
Match: tr|A0A2I4HRQ1|A0A2I4HRQ1_9ROSI (GRF1-interacting factor 3-like OS=Juglans regia OX=51240 GN=LOC109020769 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.9e-44
Identity = 111/170 (65.29%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 22  QILKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMA 81
           QI KYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQ P MPPQMA
Sbjct: 23  QIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPTMPPQMA 82

Query: 82  PHPAMQQGGYYMQHPQAAMMAQQSGLFPPKVPLQFGNPHQLQDXXXXXXXXXXXXXXXXX 141
           PHPA+QQGGYYMQHPQAA MAQQ G+FP K+PLQF NPHQ+QD       XXXXXX    
Sbjct: 83  PHPALQQGGYYMQHPQAAAMAQQPGIFPQKLPLQFNNPHQMQD--PQQQLXXXXXXAIQG 142

Query: 142 XXXXXXXXXXXXXXXXXXXXXXXXASAGGPARSSGQTDGRGGGKQDSADV 192
                                    S+GGP   +G  D RGG KQD ++V
Sbjct: 143 QMGLRAGGANNGLHPMHTETTHGGGSSGGPPSVAGPNDVRGGSKQDGSEV 190

The following BLAST results are available for this feature:

BLAST of Carg02101 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939603.1	1.2e-57	99.41	GRF1-interacting factor 3-like [Cucurbita moschata] >XP_022939605.1 GRF1-interac...	[more]
XP_022993755.1	1.8e-56	95.24	GRF1-interacting factor 3-like [Cucurbita maxima] >XP_022993756.1 GRF1-interacti...	[more]
XP_004138447.1	6.7e-56	88.82	PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis sativus] >KGN45750.1 hy...	[more]
XP_016899447.1	6.7e-56	92.94	PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis melo]	[more]
XP_011656394.1	2.8e-54	86.71	PREDICTED: GRF1-interacting factor 2 isoform X1 [Cucumis sativus]	[more]

BLAST of Carg02101 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00850.1	6.5e-29	66.96	GRF1-interacting factor 3	[more]
AT1G01160.2	2.0e-17	56.70	GRF1-interacting factor 2	[more]
AT5G28640.1	1.0e-13	66.67	SSXT family protein	[more]

BLAST of Carg02101 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93VH6\|GIF3_ARATH	1.2e-27	66.96	GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1	[more]
sp\|Q9MAL9\|GIF2_ARATH	3.2e-17	57.58	GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1	[more]
sp\|Q8L8A5\|GIF1_ARATH	1.8e-12	66.67	GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1	[more]
sp\|Q8BW22\|CREST_MOUSE	1.4e-07	44.00	Calcium-responsive transactivator OS=Mus musculus OX=10090 GN=Ss18l1 PE=1 SV=1	[more]
sp\|Q91XJ0\|CREST_RAT	1.4e-07	44.00	Calcium-responsive transcription coactivator OS=Rattus norvegicus OX=10116 GN=Ss...	[more]

BLAST of Carg02101 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DTX1\|A0A1S4DTX1_CUCME	4.4e-56	92.94	GRF1-interacting factor 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=...	[more]
tr\|A0A0A0K7M8\|A0A0A0K7M8_CUCSA	4.4e-56	88.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008810 PE=4 SV=1	[more]
tr\|A0A1S4DTY1\|A0A1S4DTY1_CUCME	1.9e-54	90.75	GRF1-interacting factor 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=...	[more]
tr\|A0A2C9VUL6\|A0A2C9VUL6_MANES	3.0e-44	61.54	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G018100 PE=4 SV=...	[more]
tr\|A0A2I4HRQ1\|A0A2I4HRQ1_9ROSI	3.9e-44	65.29	GRF1-interacting factor 3-like OS=Juglans regia OX=51240 GN=LOC109020769 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003713	transcription coactivator activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007726	SS18_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003713	transcription coactivator activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02101-RA	Carg02101-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007726	SS18 family	PFAM	PF05030	SSXT	coord: 22..72 e-value: 5.4E-21 score: 73.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..216
None	No IPR available	PANTHER	PTHR23107	SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN	coord: 22..210
None	No IPR available	PANTHER	PTHR23107:SF0	GRF1-INTERACTING FACTOR 2-RELATED	coord: 22..210

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02101	Cla006556	Watermelon (97103) v1	carwmB0261
Carg02101	Csa6G008810	Cucumber (Chinese Long) v2	carcuB0297
Carg02101	MELO3C008248	Melon (DHL92) v3.5.1	carmeB0267
Carg02101	ClCG11G006560	Watermelon (Charleston Gray)	carwcgB0255
Carg02101	CSPI06G01310	Wild cucumber (PI 183967)	carcpiB0301
Carg02101	Cucsa.136290	Cucumber (Gy14) v1	carcgyB0307
Carg02101	Cp4.1LG13g11030	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02101	CsGy6G001360	Cucumber (Gy14) v2	carcgybB0284
Carg02101	MELO3C008248.2	Melon (DHL92) v3.6.1	carmedB0278
Carg02101	CsaV3_6G001440	Cucumber (Chinese Long) v3	carcucB0300
Carg02101	Cla97C11G213520	Watermelon (97103) v2	carwmbB0269
Carg02101	Bhi04G001933	Wax gourd	carwgoB0349

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02101	Wild cucumber (PI 183967)	carcpiB0293
Carg02101	Silver-seed gourd	carcarB020
Carg02101	Silver-seed gourd	carcarB096
Carg02101	Silver-seed gourd	carcarB183
Carg02101	Silver-seed gourd	carcarB302
Carg02101	Silver-seed gourd	carcarB304
Carg02101	Silver-seed gourd	carcarB311
Carg02101	Cucumber (Gy14) v2	carcgybB0276
Carg02101	Cucumber (Gy14) v2	carcgybB0279
Carg02101	Cucumber (Gy14) v1	carcgyB0313
Carg02101	Cucurbita maxima (Rimu)	carcmaB0361
Carg02101	Cucurbita maxima (Rimu)	carcmaB0362
Carg02101	Cucurbita maxima (Rimu)	carcmaB0374
Carg02101	Cucurbita maxima (Rimu)	carcmaB0375
Carg02101	Cucurbita maxima (Rimu)	carcmaB0376
Carg02101	Cucurbita moschata (Rifu)	carcmoB0361
Carg02101	Cucurbita moschata (Rifu)	carcmoB0362
Carg02101	Cucurbita moschata (Rifu)	carcmoB0370
Carg02101	Cucurbita moschata (Rifu)	carcmoB0371
Carg02101	Cucurbita moschata (Rifu)	carcmoB0372
Carg02101	Cucurbita pepo (Zucchini)	carcpeB0374
Carg02101	Cucurbita pepo (Zucchini)	carcpeB0375
Carg02101	Cucurbita pepo (Zucchini)	carcpeB0376
Carg02101	Cucurbita pepo (Zucchini)	carcpeB0379
Carg02101	Wild cucumber (PI 183967)	carcpiB0296
Carg02101	Cucumber (Chinese Long) v2	carcuB0292
Carg02101	Cucumber (Chinese Long) v2	carcuB0289
Carg02101	Cucumber (Chinese Long) v3	carcucB0292
Carg02101	Cucumber (Chinese Long) v3	carcucB0295
Carg02101	Bottle gourd (USVL1VR-Ls)	carlsiB236
Carg02101	Bottle gourd (USVL1VR-Ls)	carlsiB239
Carg02101	Melon (DHL92) v3.5.1	carmeB0271
Carg02101	Melon (DHL92) v3.6.1	carmedB0282
Carg02101	Watermelon (Charleston Gray)	carwcgB0250
Carg02101	Watermelon (Charleston Gray)	carwcgB0259
Carg02101	Watermelon (97103) v1	carwmB0247
Carg02101	Watermelon (97103) v1	carwmB0258
Carg02101	Watermelon (97103) v2	carwmbB0264
Carg02101	Watermelon (97103) v2	carwmbB0275