Cla006554 (gene) Watermelon (97103) v1

Overview
NameCla006554
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionYip1 domain family protein (AHRD V1 **-- F2TQT0_AJEDA); contains Interpro domain(s) IPR006977 Yip1 domain
LocationChr11 : 1281781 .. 1285278 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAACCTACACAAATCTTCCTACTAGCCATTTGCTTGGCTCAGTCCCTGTACGCACTTTTTCATACGCCTTTGCTTGCTTCTTTTATTTTATCTACTTCTTCAGTTGACCTCTGATTTGTATTAAGATTCTGGAATATCTGCGTCATTCTTCGCGATGATTGATCTGCTTCGTAATGTCATCGGTTGCGATTTCGTCCTTACATTTTTTTTTTTTTTTTTGTGTTTATTTGTTTTTTAAAGATGAATAATAAGGTGGAAAGTGCTTTGTTTGGGCTTCTTGCGTGTATGTTATGCTGTTTTTGAGAATTCATCGGAAGTAAAAGTATAACGAAGTACTGTTCTTTCGAGGCCACCGATATTTTTCTTTGCTAATTAGTGTGGAGTTTAAACCAGGACATTATTGCTGATTTTGAGATTTTCTTTTCTTGTGTTCTTGATTTTTTCTTTGGCGCCACCTGTAAAACGAACATCCGTGATTGATTGTTGAATATGAGTGCAGTATCTGTGCTACTTAATAGGGAAATAAGTTTTGATACTTCCAGTTGCGTCTTCTGAAGATGCCTTTTGCAATATATTGGCAGTTGGCGTGTTTGTTTGTATTGTTTTTGGCTTTTCAGAGGCCAGGTTCCGACGCCATCTAGTTTTGCTGGGCTGAATTTCTGGTGAGCTTGAAATAGAAAGACCTGGCTAGTTTTTTTTTTTCCCTCCTGGGTTTATAAGGTTAAAAATGCATATTGGTGGGAAGGTAGATTCAATGTTATTATATCATTGAGGGGATCTGGTATTTCAGCACGTGTGCATTGAATCTCAGCTTTTTTGTTGATCAACGATAGTACTCTAATACAGTAATGCAAGTTTTAACTGCAGCTTTTTTGTTGGATTTTATATTTTATATTTATTTCTTGGCTGCAGCCTGCACCTTGAATCCCTGTGTGTTTAAATGTTATTGTGCTCTGGTAACTTTAGTTTTGAAATTTATGGCCTTCTTTAACCCTCTCTTTGTTTTCCAAGCTCCTTTGTCTGCATATTTTATCTTATCCTTTTTTTGGTGGATCAACAGGCGGTAATCAATGAAGAGACTGAGAAAAGAGGCACAGACAATGAAAGTATGAACAAATTTCAGTATCTTCTTCTTAGTAATCTTATTTCATTTTGTGTTCGATAATTAGTCACACCTAAAAAATTATTCTATTTTACTATTTAATTTCACATAAACTCATCTCCAAGGAATGACTTCTTAATTATATGCAGCACCAGAAGCAAGTATGCAGACGTTCCCCCCAACTAATGGAGGGGACAGAGGGAGAGGTTATCAAACTCTTGAAAGTCCAAGTGGTATGCTGATCATGTACTCCCACTAGGCTATAGTCTATTGAATAGTCTGTTATGATAATAGCAATTGGTGAAAATAATGATTAGAGATTATTCGTTTCATTTTCCTTTACTTTTCTGAACTAGGGGTTCTTACTTTACTTTTATAGATCATTTAACAATTTTAATATTACATTTTCCCCATGTGCTTGTGGTTTTCCCCATGTGTTTGTGGTTTTTATTAATATATATATATATATATATCTGTTTTCTTATAATCTAATTAAATTATTTCTTCTACTAGCTAGTTTTGGACATACATGAAATATGGGATTGAGATATGTTTGTTTCAAGTTCAACTAATTAATCATTGACTTTGTGTATGAGATTCTCCTTTGTTGTAACCATCATAAGTTTACTTGTGGCCAATATGGACAATAGGTATAATACAGGACTTAGAGGGAATTAGTTCAATCCATGGTGGCCATGTGCATAGGATTTAATATCCTACAAATTTTCTTGGCACCTCAATAATGTAGGGTAGTTCAAGTGTTCCTGTGAGATTAGTCGAGGTCCACACAAGTTGTGTTGGAAGTCGAAAGAAAAAAAAGGATTTTCCTTTCTTTGTATCTTTTGACTATCAAGGTTGAAAATGTTGTGTATCATGGCTACCAGATGTTTTTACATTGATTTAGTATTGTGGTACAAGGCTCTTGAATCTAACCCAAGCGGTTTGTAGAATTCTTTGATATGGAAGGTTGAAGCCACCTTTCTAGTTTCAAACCCCAAGACACAGAAAAGAGAGCCTGTTTCTGGATATTAGGAAGTAAAACCTTTTTCAAAAAATAGACTGCCACATTATAAGGCTCCCGAAGATCCGATTTCTGTCTTGCATGCATTTTTATGTGGTTGATTCTTTTCTTATGGTGAACCATACAATTGACTCCATTTACTTATGTGCAGATTCTCAGCAGCAACCATCAAATGACTGGAAGGGGGTGTTTAGTGTATCATCTTACACTCAATATTTCAATGTGGATACGGACATTGTCATGAATAGATTGATTAGTTCCTTGTATCCCATGGGTGGAGACTTTTCCAGCAAGATCGATGCAAATCCTGATCTGTGAGTTTTTTTGTTTCCTCTTGTAACCTTAATAATTTTACTCTCTGATGGCTATGGGATTATCTGTGAGCTTTTCAATGCCTACCTTCTGGTGTTTTTTTTTTCTTTTCTAAATTAATGTGCTTCCCTGCCTGATCATCATTCAAGAATTTATGTGGATGTTGATTTTGATCTTGTTTTTGAAACTAAATGGATTATCAAACTCCTTTTGTTGGATTTTGCTATAACTCAGATATGGGCTCGTGTGGATCACCACTACATTGGTATTTGTCCTTGCGGCACTAGGAAACTGTGCGACCTTCCTCATGCAAAGACGAAGTGATCACGGTGCTGCGTGGAGTTTTGATGTCAGCTATATGAATGTGGCTGCTGGGTCTGTCTATGGCTATGCGATTGTGGTGCCCATGGCATTTTACTTTTCACTTCAGTACTTGGGGTCAAATTCTAGCCTCATAAGATTTTGGTGCTTGTGGGGATACTCTCTGTTCATTTTTATTCTGGCATCTGTAAGCTTCTGGAATCTCTACTGCAATTTTGTTCTCTTCTTTTATCCATTAGACATGATTCCATACATGACTTTGCCGAATTTGACTTTTTTGACATATATATCTTTGCCATTTCCTTGTTTTGGTACTTCAGTTTCTTTTTTACTTCATTTACTTTTATATATTTTGAATTTCTAGCTTTTATAGCCAGTAGATATTGCAATGAGCATATAAGAATAAAGAGAAGAATACTTTTGCCCAGACTAGATGTTTTCAATTTTCATTTTCAGAGGACTTGCATGAGTTTTTATTCAGCAAAGGTCCATTTTGATGGGCAATATAACTGCATGATTTTTACAATTTTTTCTCTTTTCTAGTTTCTGTTGCTCATCCCGGTTGAAATTCTGCGATGGTTCATTATTCTCCTTTCTGGTGCTGCCTCAGCAAGTTTTGTTGCTTTGAACCTGAGGTCGTATATTGAGGGGAATGATCTTTCGGTTCTGATAGTTGCTGCATTTTTCTTGCAAATGGCTTTGGCAATCTTCATCAAAGTGTGGTTCTTTCCTTGA

mRNA sequence

ATGGATGAAACCTACACAAATCTTCCTACTAGCCATTTGCTTGGCTCAGTCCCTGCGGTAATCAATGAAGAGACTGAGAAAAGAGGCACAGACAATGAAACACCAGAAGCAAGTATGCAGACGTTCCCCCCAACTAATGGAGGGGACAGAGGGAGAGGTTATCAAACTCTTGAAAGTCCAAGTGATTCTCAGCAGCAACCATCAAATGACTGGAAGGGGGTGTTTAGTGTATCATCTTACACTCAATATTTCAATGTGGATACGGACATTGTCATGAATAGATTGATTAGTTCCTTGTATCCCATGGGTGGAGACTTTTCCAGCAAGATCGATGCAAATCCTGATCTATATGGGCTCGTGTGGATCACCACTACATTGGTATTTGTCCTTGCGGCACTAGGAAACTGTGCGACCTTCCTCATGCAAAGACGAAGTGATCACGGTGCTGCGTGGAGTTTTGATGTCAGCTATATGAATGTGGCTGCTGGGTCTGTCTATGGCTATGCGATTGTGGTGCCCATGGCATTTTACTTTTCACTTCAGTACTTGGGGTCAAATTCTAGCCTCATAAGATTTTGGTGCTTGTGGGGATACTCTCTGTTCATTTTTATTCTGGCATCTTTTCTGTTGCTCATCCCGGTTGAAATTCTGCGATGGTTCATTATTCTCCTTTCTGGTGCTGCCTCAGCAAGTTTTGTTGCTTTGAACCTGAGGTCGTATATTGAGGGGAATGATCTTTCGGTTCTGATAGTTGCTGCATTTTTCTTGCAAATGGCTTTGGCAATCTTCATCAAAGTGTGGTTCTTTCCTTGA

Coding sequence (CDS)

ATGGATGAAACCTACACAAATCTTCCTACTAGCCATTTGCTTGGCTCAGTCCCTGCGGTAATCAATGAAGAGACTGAGAAAAGAGGCACAGACAATGAAACACCAGAAGCAAGTATGCAGACGTTCCCCCCAACTAATGGAGGGGACAGAGGGAGAGGTTATCAAACTCTTGAAAGTCCAAGTGATTCTCAGCAGCAACCATCAAATGACTGGAAGGGGGTGTTTAGTGTATCATCTTACACTCAATATTTCAATGTGGATACGGACATTGTCATGAATAGATTGATTAGTTCCTTGTATCCCATGGGTGGAGACTTTTCCAGCAAGATCGATGCAAATCCTGATCTATATGGGCTCGTGTGGATCACCACTACATTGGTATTTGTCCTTGCGGCACTAGGAAACTGTGCGACCTTCCTCATGCAAAGACGAAGTGATCACGGTGCTGCGTGGAGTTTTGATGTCAGCTATATGAATGTGGCTGCTGGGTCTGTCTATGGCTATGCGATTGTGGTGCCCATGGCATTTTACTTTTCACTTCAGTACTTGGGGTCAAATTCTAGCCTCATAAGATTTTGGTGCTTGTGGGGATACTCTCTGTTCATTTTTATTCTGGCATCTTTTCTGTTGCTCATCCCGGTTGAAATTCTGCGATGGTTCATTATTCTCCTTTCTGGTGCTGCCTCAGCAAGTTTTGTTGCTTTGAACCTGAGGTCGTATATTGAGGGGAATGATCTTTCGGTTCTGATAGTTGCTGCATTTTTCTTGCAAATGGCTTTGGCAATCTTCATCAAAGTGTGGTTCTTTCCTTGA

Protein sequence

MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRGRGYQTLESPSDSQQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYGLVWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSLQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRSYIEGNDLSVLIVAAFFLQMALAIFIKVWFFP
Homology
[Close]
BLAST of Cla006554 vs. Swiss-Prot
Match: YIPF1_DICDI (Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.4e-27
Identity = 70/226 (30.97%), Postives = 120/226 (53.10%), Query Frame = 1 

Query: 47  GGDRGRGYQTLESPSDSQQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDF 106
           GG+      +   P ++ +  +      + V  Y   FNVDT  V  RLI S+ P+   F
Sbjct: 98  GGNSSNNKFSDNVPLNTNEDGTEKKYSFYEVPYYRFLFNVDTKEVGLRLIRSMLPIKFSF 157

Query: 107 SSKIDANPDLYGLVWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVY 166
            + I  NPDLYG  W+ T+LVF++A   N   +     SDH  +W  D+  +  +A ++Y
Sbjct: 158 FNLIRENPDLYGPFWVLTSLVFIVAVTSNLNEYF--HSSDH-KSWEVDIQKIVYSAITIY 217

Query: 167 GYAIVVPMAFYFSLQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSG 226
           GY+ V+P+  +   +++     L+   C++GY+LFIF+ AS L +IP+++++W I+ ++ 
Sbjct: 218 GYSFVIPLILWGIFKWMNLGLRLLDMLCIYGYTLFIFVPASILCVIPLQLVQWIIVAIAS 277

Query: 227 AASASFVALNLRSYI-EGNDLSVLIVAAFF--LQMALAIFIKVWFF 270
             S  F+  N+ + + E      LI+ A    L + LA+ +K++FF
Sbjct: 278 IVSGLFLVTNIFTPLKEDFTKRGLIICAVIGALHIGLALVLKLYFF 320

[Close]
BLAST of Cla006554 vs. Swiss-Prot
Match: YIPF2_HUMAN (Protein YIPF2 OS=Homo sapiens GN=YIPF2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.9e-21
Identity = 79/239 (33.05%), Postives = 112/239 (46.86%), Query Frame = 1 

Query: 46  NGGDRGRGYQTLESPSDS----QQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYP 105
           +GG  G     +E  SD     Q+Q      G ++ S Y  +F+VDT  V++R+  SL P
Sbjct: 46  SGGSYG-AEDEVEEESDKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLP 105

Query: 106 MGGD--FSSKIDANPDLYGLVWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMN 165
             G       +   PDLYG  WI  TL FVLA  GN    L QRR D    +S     + 
Sbjct: 106 RPGHNFVRHHLRNRPDLYGPFWICATLAFVLAVTGNLTLVLAQRR-DPSIHYSPQFHKVT 165

Query: 166 VAAGSVYGYAIVVPMAFYFSLQYLGSNS------SLIRFWCLWGYSLFIFILASFLLLIP 225
           VA  S+Y YA +VP+A +  L++           + +   C++GYSLF+FI    L LIP
Sbjct: 166 VAGISIYCYAWLVPLALWGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIP 225

Query: 226 VEILRWFIILLSGAASASFVALNLRSYIEGND---LSVLIVAAFFLQMALAIFIKVWFF 270
           V  L+W    L+   SA+ +   L   +  +     +VL+     L   LA+  K++FF
Sbjct: 226 VPWLQWLFGALALGLSAAGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLYFF 282

[Close]
BLAST of Cla006554 vs. Swiss-Prot
Match: YIPF1_PONAB (Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-20
Identity = 64/201 (31.84%), Postives = 106/201 (52.74%), Query Frame = 1 

Query: 80  YTQYFNVDTDIVMNRLISSLYPMGGDFSSK--IDANPDLYGLVWITTTLVFVLAALGNCA 139
           Y  +F+VDT  V +R+  SL P+ G    +  I +NPDLYG  WI  TLVF +A  GN +
Sbjct: 82  YQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLS 141

Query: 140 TFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSLQYLGS------NSSLIR 199
            FL+    +    +  +   +++AA ++Y YA +VP+A +  L +  S      + S + 
Sbjct: 142 NFLIHL-GEKTYRYVPEFRKVSIAATTIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLE 201

Query: 200 FWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRSYIEGNDLSV--- 259
             C++GYSLFI+I  + L +IP + +RW +++++   S S +A+     +  ++  V   
Sbjct: 202 IVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSVLAMTFWPAVREDNRRVALA 261

Query: 260 LIVAAFFLQMALAIFIKVWFF 270
            IV    L M L++    +FF
Sbjct: 262 TIVTIVLLHMLLSVGCLAYFF 281

[Close]
BLAST of Cla006554 vs. Swiss-Prot
Match: YIPF1_HUMAN (Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.8e-20
Identity = 64/201 (31.84%), Postives = 105/201 (52.24%), Query Frame = 1 

Query: 80  YTQYFNVDTDIVMNRLISSLYPMGGDFSSK--IDANPDLYGLVWITTTLVFVLAALGNCA 139
           Y  +F+VDT  V +R+  SL P+ G    +  I +NPDLYG  WI  TLVF +A  GN +
Sbjct: 82  YQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLS 141

Query: 140 TFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSLQYLGS------NSSLIR 199
            FL+    +    +  +   +++AA  +Y YA +VP+A +  L +  S      + S + 
Sbjct: 142 NFLIHL-GEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLE 201

Query: 200 FWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRSYIEGNDLSV--- 259
             C++GYSLFI+I  + L +IP + +RW +++++   S S +A+     +  ++  V   
Sbjct: 202 IVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRVALA 261

Query: 260 LIVAAFFLQMALAIFIKVWFF 270
            IV    L M L++    +FF
Sbjct: 262 TIVTIVLLHMLLSVGCLAYFF 281

[Close]
BLAST of Cla006554 vs. Swiss-Prot
Match: YIPF1_RAT (Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-19
Identity = 63/201 (31.34%), Postives = 104/201 (51.74%), Query Frame = 1 

Query: 80  YTQYFNVDTDIVMNRLISSLYPMGGDFSSK--IDANPDLYGLVWITTTLVFVLAALGNCA 139
           Y  +F+VDT  V +R+  SL P+ G    +  I +NPDLYG  WI  TLVF +A  GN +
Sbjct: 82  YQTFFDVDTYQVFDRIKGSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLS 141

Query: 140 TFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSLQYLGS------NSSLIR 199
            FL+    +    +  +   +++AA  +Y YA +VP+A +  L +  S      + S + 
Sbjct: 142 NFLIHL-GEKTYHYVPEFQKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMNIVSYSFLE 201

Query: 200 FWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRSYIEGNDLSV--- 259
             C++GYSLFI+I  + L +IP  ++RW ++ ++   S S +A+     +  ++  V   
Sbjct: 202 IVCVYGYSLFIYIPTAVLWIIPQRVIRWVLVTIALGISGSVLAMTFWPAVREDNRRVALA 261

Query: 260 LIVAAFFLQMALAIFIKVWFF 270
            IV    L + L++    +FF
Sbjct: 262 TIVTIMLLHVLLSVGCLAYFF 281

[Close]
BLAST of Cla006554 vs. TrEMBL
Match: A0A0A0K8E4_CUCSA (Protein YIPF OS=Cucumis sativus GN=Csa_6G008790 PE=3 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 1.0e-144
Identity = 255/270 (94.44%), Postives = 265/270 (98.15%), Query Frame = 1 

Query: 1   MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRGRGYQTLESP 60
           MDETYTNLPTSHLLGSVPAVINEE EK GT++ETPEA MQTFPPTNGGDRGRGYQTLESP
Sbjct: 1   MDETYTNLPTSHLLGSVPAVINEEIEKSGTEHETPEAIMQTFPPTNGGDRGRGYQTLESP 60

Query: 61  SDSQQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYGLV 120
           SDS QQPSNDWKGVFSVSSY+QYFNVDTDIVMNRLISSLYP+GGDFSSKIDANPDLYGLV
Sbjct: 61  SDSHQQPSNDWKGVFSVSSYSQYFNVDTDIVMNRLISSLYPIGGDFSSKIDANPDLYGLV 120

Query: 121 WITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL 180
           WITTTLVFVLAALGNCAT+LMQ+RSD GAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL
Sbjct: 121 WITTTLVFVLAALGNCATYLMQKRSDQGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL 180

Query: 181 QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRSY 240
           QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFV+LNLR+Y
Sbjct: 181 QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVSLNLRAY 240

Query: 241 IEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
           I+GNDLSVLI+AAFFLQMALAIFIKVWFFP
Sbjct: 241 IDGNDLSVLIIAAFFLQMALAIFIKVWFFP 270

[Close]
BLAST of Cla006554 vs. TrEMBL
Match: W9SA55_9ROSA (Protein YIPF OS=Morus notabilis GN=L484_010400 PE=3 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 2.8e-118
Identity = 205/271 (75.65%), Postives = 239/271 (88.19%), Query Frame = 1 

Query: 1   MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRGRGYQTLESP 60
           MDE++ NLPTSHLLGSVPAVINEE EK  T  E P A+MQ FPPTNGGDRGRGYQTL S 
Sbjct: 1   MDESFKNLPTSHLLGSVPAVINEEKEKSSTSYEAPGANMQIFPPTNGGDRGRGYQTLGSS 60

Query: 61  SDS-QQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYGL 120
           ++  +QQP+N+WKGVFS+SSY QYFNVDTDIV+NRL+SSLYP+GGDF S IDANPDLYGL
Sbjct: 61  TEGFEQQPANNWKGVFSISSYIQYFNVDTDIVLNRLLSSLYPIGGDFLSNIDANPDLYGL 120

Query: 121 VWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFS 180
           +WI+TTLVFVLA+LGNCAT+L+Q+ +D G +WSF+VSYMNVAAGS+YGYA VVP+AFYF 
Sbjct: 121 IWISTTLVFVLASLGNCATYLIQKHTDKGTSWSFNVSYMNVAAGSIYGYAAVVPLAFYFL 180

Query: 181 LQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRS 240
           LQY+GSN SL+RFWC+WGYSLFIF+ ASFLLLIPVE LRW II+ +GAASA FVA NL+S
Sbjct: 181 LQYVGSNPSLVRFWCMWGYSLFIFVPASFLLLIPVEFLRWIIIITTGAASAGFVASNLKS 240

Query: 241 YIEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
            IEG DL++L+VAAF LQ ALA+FIKVWFFP
Sbjct: 241 SIEGGDLTILMVAAFVLQFALAVFIKVWFFP 271

[Close]
BLAST of Cla006554 vs. TrEMBL
Match: M5XET2_PRUPE (Protein YIPF OS=Prunus persica GN=PRUPE_ppa009988mg PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 4.6e-113
Identity = 194/271 (71.59%), Postives = 239/271 (88.19%), Query Frame = 1 

Query: 1   MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRGRGYQTLESP 60
           MDE+Y  LPTSHLLGSVPAV++E+ +K  T  E PEA++Q FPP NGG++GRGYQT+ S 
Sbjct: 1   MDESYAGLPTSHLLGSVPAVVSEDKDKNTTSYEAPEANLQIFPPNNGGEKGRGYQTVGST 60

Query: 61  SDS-QQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYGL 120
           S++ +QQP+N+W+GVF++SSYTQYFNVDTD+V+NRL+SSLYP GGDF SKIDANPDLYGL
Sbjct: 61  SETFEQQPANNWRGVFNISSYTQYFNVDTDVVLNRLLSSLYPHGGDFFSKIDANPDLYGL 120

Query: 121 VWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFS 180
           +WI+TTLVFVLAALGNCAT+LM++ SD   +W+F+VSYMN+AA SVYGYAI+VP+AFYF 
Sbjct: 121 IWISTTLVFVLAALGNCATYLMEKHSDSSTSWAFNVSYMNLAAFSVYGYAILVPLAFYFL 180

Query: 181 LQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRS 240
           L YLGSN+SL+RFWC+WGYSLFIF+LASFLLLIPVE  RW II+L GAAS+ FVA NL++
Sbjct: 181 LHYLGSNASLVRFWCMWGYSLFIFVLASFLLLIPVEAFRWIIIILVGAASSCFVAFNLKT 240

Query: 241 YIEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
           YIEGND  V+++AAF LQ+ALAIF KV+FFP
Sbjct: 241 YIEGND--VVVIAAFLLQLALAIFFKVYFFP 269

[Close]
BLAST of Cla006554 vs. TrEMBL
Match: A0A067LCB5_JATCU (Protein YIPF OS=Jatropha curcas GN=JCGZ_01378 PE=3 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 1.1e-111
Identity = 194/272 (71.32%), Postives = 235/272 (86.40%), Query Frame = 1 

Query: 1   MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGD-RGRGYQTLES 60
           MDE+Y NLPTSHLLGSVPAV+ EE      +   PEA+MQTFPP NGG    RGYQTL S
Sbjct: 1   MDESYNNLPTSHLLGSVPAVVTEEKSTANYEVPVPEANMQTFPPNNGGGGSNRGYQTLGS 60

Query: 61  PSDS-QQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYG 120
           P ++ +QQ  N+WKGVFSVSSYTQYFNVDTDIV+NR++SS YP+GGDF SKIDANPDLYG
Sbjct: 61  PPEAFEQQSPNNWKGVFSVSSYTQYFNVDTDIVINRMMSSFYPIGGDFFSKIDANPDLYG 120

Query: 121 LVWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYF 180
           L+W++TTLVFVLA+LGNCAT+LMQ+ +D  A+WSFDV Y+NVAA ++YGYAI+VP+AFYF
Sbjct: 121 LIWVSTTLVFVLASLGNCATYLMQKHTDSSASWSFDVGYVNVAAAAIYGYAILVPLAFYF 180

Query: 181 SLQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLR 240
            LQYLG+N+SLIR+WC+WGYSL IFIL+SFLL+IPVE+LRW IIL +G  SA FVA+NL+
Sbjct: 181 LLQYLGTNASLIRYWCMWGYSLVIFILSSFLLVIPVEVLRWIIILAAGIDSACFVAMNLK 240

Query: 241 SYIEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
           S I+GNDL++++VAAFFLQ+ALAIFIK WFFP
Sbjct: 241 SCIDGNDLTIVLVAAFFLQLALAIFIKAWFFP 272

[Close]
BLAST of Cla006554 vs. TrEMBL
Match: A0A0B2PUV4_GLYSO (Protein YIPF OS=Glycine soja GN=glysoja_037553 PE=3 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 1.1e-111
Identity = 199/270 (73.70%), Postives = 237/270 (87.78%), Query Frame = 1 

Query: 2   DETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRGRGYQTLESPS 61
           + +YT LPTSHLLGSVPAVI EE     T +    A+MQTFPP NGGDRG G+QTL SP+
Sbjct: 3   ESSYTGLPTSHLLGSVPAVITEENN--ATKHVATGANMQTFPPNNGGDRGPGHQTLGSPT 62

Query: 62  DS-QQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYGLV 121
           ++ +QQP+N+W+G+FS+SSY++YFNVDTD+V+ RLISSL P+  DF SKIDANPDLYGL+
Sbjct: 63  EAFEQQPANNWRGIFSMSSYSEYFNVDTDVVLIRLISSLNPVAADFFSKIDANPDLYGLI 122

Query: 122 WITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL 181
           WI+TTLVFVLA+LGN ATFLMQ+ +D+  +WSFDVSY+NVAA S+YGYAIVVP+A+YF L
Sbjct: 123 WISTTLVFVLASLGNLATFLMQKHADNSTSWSFDVSYVNVAACSIYGYAIVVPLAYYFFL 182

Query: 182 QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRSY 241
           QY+GSN+SLIRFWCLWGYSL IFI++SFLL+IPVE LRW IILL+G ASASFVALNLRSY
Sbjct: 183 QYMGSNASLIRFWCLWGYSLTIFIMSSFLLIIPVEFLRWVIILLTGVASASFVALNLRSY 242

Query: 242 IEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
           IEGN+LSV I+AAFFLQMALAIFIKVWFFP
Sbjct: 243 IEGNELSVAIIAAFFLQMALAIFIKVWFFP 270

[Close]
BLAST of Cla006554 vs. NCBI nr
Match: gi|449441358|ref|XP_004138449.1| (PREDICTED: protein YIPF1 homolog [Cucumis sativus])

HSP 1 Score: 520.8 bits (1340), Expect = 1.4e-144
Identity = 255/270 (94.44%), Postives = 265/270 (98.15%), Query Frame = 1 

Query: 1   MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRGRGYQTLESP 60
           MDETYTNLPTSHLLGSVPAVINEE EK GT++ETPEA MQTFPPTNGGDRGRGYQTLESP
Sbjct: 1   MDETYTNLPTSHLLGSVPAVINEEIEKSGTEHETPEAIMQTFPPTNGGDRGRGYQTLESP 60

Query: 61  SDSQQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYGLV 120
           SDS QQPSNDWKGVFSVSSY+QYFNVDTDIVMNRLISSLYP+GGDFSSKIDANPDLYGLV
Sbjct: 61  SDSHQQPSNDWKGVFSVSSYSQYFNVDTDIVMNRLISSLYPIGGDFSSKIDANPDLYGLV 120

Query: 121 WITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL 180
           WITTTLVFVLAALGNCAT+LMQ+RSD GAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL
Sbjct: 121 WITTTLVFVLAALGNCATYLMQKRSDQGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL 180

Query: 181 QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRSY 240
           QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFV+LNLR+Y
Sbjct: 181 QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVSLNLRAY 240

Query: 241 IEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
           I+GNDLSVLI+AAFFLQMALAIFIKVWFFP
Sbjct: 241 IDGNDLSVLIIAAFFLQMALAIFIKVWFFP 270

[Close]
BLAST of Cla006554 vs. NCBI nr
Match: gi|659081572|ref|XP_008441401.1| (PREDICTED: protein YIPF1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 518.5 bits (1334), Expect = 7.2e-144
Identity = 255/270 (94.44%), Postives = 265/270 (98.15%), Query Frame = 1 

Query: 1   MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRGRGYQTLESP 60
           MDETYTNLPTSHLLGSVPAVINEE EK GT++ETPEASMQTFPPTNGGDRGRGY+TLE+P
Sbjct: 1   MDETYTNLPTSHLLGSVPAVINEEIEKSGTEHETPEASMQTFPPTNGGDRGRGYRTLETP 60

Query: 61  SDSQQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYGLV 120
           SDSQQQPSNDWKGVFSVSSY+QYFNVDTDIVMNRLISSLYP+GGDFSSKIDANPDLYGLV
Sbjct: 61  SDSQQQPSNDWKGVFSVSSYSQYFNVDTDIVMNRLISSLYPVGGDFSSKIDANPDLYGLV 120

Query: 121 WITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL 180
           WITTTLVFVLAALGNCATFLMQ+RS  GAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL
Sbjct: 121 WITTTLVFVLAALGNCATFLMQKRSAQGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFSL 180

Query: 181 QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRSY 240
           QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFV+LNLRSY
Sbjct: 181 QYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVSLNLRSY 240

Query: 241 IEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
           I+ NDLSVLI+AAFFLQMALAIFIKVWFFP
Sbjct: 241 IDRNDLSVLIIAAFFLQMALAIFIKVWFFP 270

[Close]
BLAST of Cla006554 vs. NCBI nr
Match: gi|659081574|ref|XP_008441402.1| (PREDICTED: protein YIPF1 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 450.7 bits (1158), Expect = 1.8e-123
Identity = 221/232 (95.26%), Postives = 229/232 (98.71%), Query Frame = 1 

Query: 39  MQTFPPTNGGDRGRGYQTLESPSDSQQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISS 98
           MQTFPPTNGGDRGRGY+TLE+PSDSQQQPSNDWKGVFSVSSY+QYFNVDTDIVMNRLISS
Sbjct: 1   MQTFPPTNGGDRGRGYRTLETPSDSQQQPSNDWKGVFSVSSYSQYFNVDTDIVMNRLISS 60

Query: 99  LYPMGGDFSSKIDANPDLYGLVWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYM 158
           LYP+GGDFSSKIDANPDLYGLVWITTTLVFVLAALGNCATFLMQ+RS  GAAWSFDVSYM
Sbjct: 61  LYPVGGDFSSKIDANPDLYGLVWITTTLVFVLAALGNCATFLMQKRSAQGAAWSFDVSYM 120

Query: 159 NVAAGSVYGYAIVVPMAFYFSLQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILR 218
           NVAAGSVYGYAIVVPMAFYFSLQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILR
Sbjct: 121 NVAAGSVYGYAIVVPMAFYFSLQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILR 180

Query: 219 WFIILLSGAASASFVALNLRSYIEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
           WFIILLSGAASASFV+LNLRSYI+ NDLSVLI+AAFFLQMALAIFIKVWFFP
Sbjct: 181 WFIILLSGAASASFVSLNLRSYIDRNDLSVLIIAAFFLQMALAIFIKVWFFP 232

[Close]
BLAST of Cla006554 vs. NCBI nr
Match: gi|703144878|ref|XP_010108392.1| (Protein YIPF1-like protein [Morus notabilis])

HSP 1 Score: 433.0 bits (1112), Expect = 4.0e-118
Identity = 205/271 (75.65%), Postives = 239/271 (88.19%), Query Frame = 1 

Query: 1   MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRGRGYQTLESP 60
           MDE++ NLPTSHLLGSVPAVINEE EK  T  E P A+MQ FPPTNGGDRGRGYQTL S 
Sbjct: 1   MDESFKNLPTSHLLGSVPAVINEEKEKSSTSYEAPGANMQIFPPTNGGDRGRGYQTLGSS 60

Query: 61  SDS-QQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYGL 120
           ++  +QQP+N+WKGVFS+SSY QYFNVDTDIV+NRL+SSLYP+GGDF S IDANPDLYGL
Sbjct: 61  TEGFEQQPANNWKGVFSISSYIQYFNVDTDIVLNRLLSSLYPIGGDFLSNIDANPDLYGL 120

Query: 121 VWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFS 180
           +WI+TTLVFVLA+LGNCAT+L+Q+ +D G +WSF+VSYMNVAAGS+YGYA VVP+AFYF 
Sbjct: 121 IWISTTLVFVLASLGNCATYLIQKHTDKGTSWSFNVSYMNVAAGSIYGYAAVVPLAFYFL 180

Query: 181 LQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLRS 240
           LQY+GSN SL+RFWC+WGYSLFIF+ ASFLLLIPVE LRW II+ +GAASA FVA NL+S
Sbjct: 181 LQYVGSNPSLVRFWCMWGYSLFIFVPASFLLLIPVEFLRWIIIITTGAASAGFVASNLKS 240

Query: 241 YIEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
            IEG DL++L+VAAF LQ ALA+FIKVWFFP
Sbjct: 241 SIEGGDLTILMVAAFVLQFALAVFIKVWFFP 271

[Close]
BLAST of Cla006554 vs. NCBI nr
Match: gi|1009119838|ref|XP_015876598.1| (PREDICTED: protein YIPF1 homolog isoform X2 [Ziziphus jujuba])

HSP 1 Score: 419.5 bits (1077), Expect = 4.5e-114
Identity = 198/272 (72.79%), Postives = 241/272 (88.60%), Query Frame = 1 

Query: 1   MDETYTNLPTSHLLGSVPAVINEETEKRGTDNETPEASMQTFPPTNGGDRG-RGYQTLES 60
           MDE  TNLPTSHLLGSVPAV+NEE EK  T+ E PEA+MQ FPPTNGGDRG RGYQTL+S
Sbjct: 1   MDEYNTNLPTSHLLGSVPAVVNEEKEKNTTNYEVPEANMQIFPPTNGGDRGGRGYQTLQS 60

Query: 61  PSDS-QQQPSNDWKGVFSVSSYTQYFNVDTDIVMNRLISSLYPMGGDFSSKIDANPDLYG 120
           PS+  +QQP+N+WKGVFS+SSYTQYFNVDTDIV+NRL+SSL+P  GDF  KIDANPDLYG
Sbjct: 61  PSEGFEQQPANNWKGVFSISSYTQYFNVDTDIVINRLLSSLHPTSGDFFDKIDANPDLYG 120

Query: 121 LVWITTTLVFVLAALGNCATFLMQRRSDHGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYF 180
           L+WI+TTLVFVLA+LGNCAT+LM++ +D  ++WSF+V Y+N AA +VYGYA VVP+AFYF
Sbjct: 121 LIWISTTLVFVLASLGNCATYLMEKHTDKTSSWSFNVGYINTAACAVYGYAAVVPLAFYF 180

Query: 181 SLQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVALNLR 240
            LQY+GS + L+RFWC+WGYSLFIF+LASFLLLIPVEILRW II++SGAASA FV+ NL+
Sbjct: 181 LLQYMGSYADLVRFWCMWGYSLFIFVLASFLLLIPVEILRWIIIIVSGAASACFVSTNLK 240

Query: 241 SYIEGNDLSVLIVAAFFLQMALAIFIKVWFFP 271
           S ++ ND+++++VAA FLQ+ALA+FIKVWFFP
Sbjct: 241 SKLQQNDVTIVVVAACFLQLALAVFIKVWFFP 272

The following BLAST results are available for this feature:
BLAST of Cla006554 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YIPF1_DICDI9.4e-2730.97Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1[more]
YIPF2_HUMAN5.9e-2133.05Protein YIPF2 OS=Homo sapiens GN=YIPF2 PE=1 SV=1[more]
YIPF1_PONAB1.7e-2031.84Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1[more]
YIPF1_HUMAN3.8e-2031.84Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=1 SV=1[more]
YIPF1_RAT1.9e-1931.34Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1[more]
BLAST of Cla006554 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8E4_CUCSA1.0e-14494.44Protein YIPF OS=Cucumis sativus GN=Csa_6G008790 PE=3 SV=1[more]
W9SA55_9ROSA2.8e-11875.65Protein YIPF OS=Morus notabilis GN=L484_010400 PE=3 SV=1[more]
M5XET2_PRUPE4.6e-11371.59Protein YIPF OS=Prunus persica GN=PRUPE_ppa009988mg PE=3 SV=1[more]
A0A067LCB5_JATCU1.1e-11171.32Protein YIPF OS=Jatropha curcas GN=JCGZ_01378 PE=3 SV=1[more]
A0A0B2PUV4_GLYSO1.1e-11173.70Protein YIPF OS=Glycine soja GN=glysoja_037553 PE=3 SV=1[more]
BLAST of Cla006554 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441358|ref|XP_004138449.1|1.4e-14494.44PREDICTED: protein YIPF1 homolog [Cucumis sativus][more]
gi|659081572|ref|XP_008441401.1|7.2e-14494.44PREDICTED: protein YIPF1 homolog isoform X1 [Cucumis melo][more]
gi|659081574|ref|XP_008441402.1|1.8e-12395.26PREDICTED: protein YIPF1 homolog isoform X2 [Cucumis melo][more]
gi|703144878|ref|XP_010108392.1|4.0e-11875.65Protein YIPF1-like protein [Morus notabilis][more]
gi|1009119838|ref|XP_015876598.1|4.5e-11472.79PREDICTED: protein YIPF1 homolog isoform X2 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006977Yip1
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000919 cell plate assembly
biological_process GO:0009553 embryo sac development
biological_process GO:0009555 pollen development
biological_process GO:0032467 positive regulation of cytokinesis
biological_process GO:0060236 regulation of mitotic spindle organization
biological_process GO:2000694 regulation of phragmoplast microtubule organization
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005828 kinetochore microtubule
cellular_component GO:0005794 Golgi apparatus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0017137 Rab GTPase binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU61499watermelon EST collection version 2.0transcribed_cluster
WMU62426watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006554Cla006554.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU62426WMU62426transcribed_cluster
WMU61499WMU61499transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006977Yip1 domainPFAMPF04893Yip1coord: 84..233
score: 2.0
NoneNo IPR availablePANTHERPTHR12822UNCHARACTERIZEDcoord: 1..269
score: 1.7E
NoneNo IPR availablePANTHERPTHR12822:SF5INTEGRAL MEMBRANE YIP1 FAMILY PROTEINcoord: 1..269
score: 1.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006554Cla97C11G213540Watermelon (97103) v2wmwmbB362
Cla006554Csa6G008790Cucumber (Chinese Long) v2cuwmB533
Cla006554MELO3C008246Melon (DHL92) v3.5.1mewmB328
Cla006554ClCG11G006590Watermelon (Charleston Gray)wcgwmB108
Cla006554CSPI06G01290Wild cucumber (PI 183967)cpiwmB552
Cla006554Cucsa.136270Cucumber (Gy14) v1cgywmB234
Cla006554CmoCh04G030580Cucurbita moschata (Rifu)cmowmB731
Cla006554CmoCh15G001180Cucurbita moschata (Rifu)cmowmB274
Cla006554Lsi03G003490Bottle gourd (USVL1VR-Ls)lsiwmB277
Cla006554Cp4.1LG01g25410Cucurbita pepo (Zucchini)cpewmB461
Cla006554CsGy6G001340Cucumber (Gy14) v2cgybwmB497
Cla006554MELO3C008246.2Melon (DHL92) v3.6.1medwmB325
Cla006554Carg06009Silver-seed gourdcarwmB0024
Cla006554Carg02099Silver-seed gourdcarwmB0261
Cla006554CsaV3_6G001420Cucumber (Chinese Long) v3cucwmB558
Cla006554Bhi04G001935Wax gourdwgowmB347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006554Silver-seed gourdcarwmB0153
Cla006554Silver-seed gourdcarwmB0583
Cla006554Silver-seed gourdcarwmB0673
Cla006554Silver-seed gourdcarwmB1001
Cla006554Cucumber (Chinese Long) v3cucwmB084
Cla006554Cucumber (Chinese Long) v3cucwmB284
Cla006554Cucumber (Chinese Long) v3cucwmB459
Cla006554Watermelon (97103) v2wmwmbB357
Cla006554Watermelon (97103) v2wmwmbB380
Cla006554Watermelon (97103) v1wmwmB055
Cla006554Watermelon (97103) v1wmwmB096
Cla006554Watermelon (97103) v1wmwmB113
Cla006554Watermelon (97103) v1wmwmB155
Cla006554Cucumber (Gy14) v1cgywmB256
Cla006554Cucumber (Gy14) v1cgywmB312
Cla006554Cucumber (Gy14) v1cgywmB340
Cla006554Cucurbita maxima (Rimu)cmawmB249
Cla006554Cucurbita maxima (Rimu)cmawmB283
Cla006554Cucurbita maxima (Rimu)cmawmB648
Cla006554Cucurbita maxima (Rimu)cmawmB737
Cla006554Cucurbita maxima (Rimu)cmawmB740
Cla006554Cucurbita maxima (Rimu)cmawmB742
Cla006554Cucurbita maxima (Rimu)cmawmB809
Cla006554Cucurbita maxima (Rimu)cmawmB846
Cla006554Cucurbita moschata (Rifu)cmowmB238
Cla006554Cucurbita moschata (Rifu)cmowmB642
Cla006554Cucurbita moschata (Rifu)cmowmB734
Cla006554Cucurbita moschata (Rifu)cmowmB737
Cla006554Cucurbita moschata (Rifu)cmowmB800
Cla006554Cucurbita moschata (Rifu)cmowmB835
Cla006554Wild cucumber (PI 183967)cpiwmB276
Cla006554Wild cucumber (PI 183967)cpiwmB448
Cla006554Melon (DHL92) v3.5.1mewmB385
Cla006554Watermelon (Charleston Gray)wcgwmB080
Cla006554Watermelon (Charleston Gray)wcgwmB266
Cla006554Watermelon (Charleston Gray)wcgwmB392
Cla006554Cucumber (Chinese Long) v2cuwmB073
Cla006554Cucumber (Chinese Long) v2cuwmB275
Cla006554Cucurbita pepo (Zucchini)cpewmB196
Cla006554Cucurbita pepo (Zucchini)cpewmB464
Cla006554Cucurbita pepo (Zucchini)cpewmB467
Cla006554Cucurbita pepo (Zucchini)cpewmB621
Cla006554Cucurbita pepo (Zucchini)cpewmB852
Cla006554Bottle gourd (USVL1VR-Ls)lsiwmB276
Cla006554Bottle gourd (USVL1VR-Ls)lsiwmB338
Cla006554Cucumber (Gy14) v2cgybwmB257
Cla006554Cucumber (Gy14) v2cgybwmB407
Cla006554Melon (DHL92) v3.6.1medwmB176
Cla006554Melon (DHL92) v3.6.1medwmB379