Cla006543 (gene) Watermelon (97103) v1

Overview
NameCla006543
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAT hook motif DNA-binding protein (AHRD V1 *--- Q9LVB0_ARATH); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding
LocationChr11 : 1159432 .. 1160178 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCACACACAGAACAAGAACATGGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGAGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTTATCACTAAACATACTCCCAATGCCTTTCAAACCCACGTTTTCGAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACTTTCGCCCATCGCCGCCACCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGCGTCATTACCCTCCACGAACGCTTCGAGATTTTATCTCTCTCTGGCGCTTTCCTCCCCACACCCTCCCCCCACGGGGCTACCTCCTTGACCGTGTATCTCGCCGGCGGCCAAGGCCGGGTCGTTGGAGGCCTCGTCGCCGGTCCCCTCATCGCCGCTGGCCCCGTCATTGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTACCGATTGAAGAAGATGAAGAGAATGCAGAGGAGAAGAAATTAGAAGAAGAAAATATTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTGGCAGCAGCAGCAGCAGCAGCAGCAACAACAACTTCTTTGCCAGTTTATAATTTGATTCCTAATACTCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCTCCATCTTATTAA

mRNA sequence

ATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCACACACAGAACAAGAACATGGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGAGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTTATCACTAAACATACTCCCAATGCCTTTCAAACCCACGTTTTCGAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACTTTCGCCCATCGCCGCCACCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGCGTCATTACCCTCCACGAACGCTTCGAGATTTTATCTCTCTCTGGCGCTTTCCTCCCCACACCCTCCCCCCACGGGGCTACCTCCTTGACCGTGTATCTCGCCGGCGGCCAAGGCCGGGTCGTTGGAGGCCTCGTCGCCGGTCCCCTCATCGCCGCTGGCCCCGTCATTGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTACCGATTGAAGAAGATGAAGAGAATGCAGAGGAGAAGAAATTAGAAGAAGAAAATATTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTGGCAGCAGCAGCAGCAGCAGCAGCAACAACAACTTCTTTGCCAGTTTATAATTTGATTCCTAATACTCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCTCCATCTTATTAA

Coding sequence (CDS)

ATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCACACACAGAACAAGAACATGGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGAGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTTATCACTAAACATACTCCCAATGCCTTTCAAACCCACGTTTTCGAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACTTTCGCCCATCGCCGCCACCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGCGTCATTACCCTCCACGAACGCTTCGAGATTTTATCTCTCTCTGGCGCTTTCCTCCCCACACCCTCCCCCCACGGGGCTACCTCCTTGACCGTGTATCTCGCCGGCGGCCAAGGCCGGGTCGTTGGAGGCCTCGTCGCCGGTCCCCTCATCGCCGCTGGCCCCGTCATTGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTACCGATTGAAGAAGATGAAGAGAATGCAGAGGAGAAGAAATTAGAAGAAGAAAATATTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTGGCAGCAGCAGCAGCAGCAGCAGCAACAACAACTTCTTTGCCAGTTTATAATTTGATTCCTAATACTCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCTCCATCTTATTAA

Protein sequence

MADRCWGGIGNLAHTEQEHGTKNEDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPPGVITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNNSVGESSSVAAAAAAAATTTSLPVYNLIPNTQISQEMFWAPLPLPPPSY
Homology
[Close]
BLAST of Cla006543 vs. Swiss-Prot
Match: AHL15_ARATH (AT-hook motif nuclear-localized protein 15 OS=Arabidopsis thaliana GN=AHL15 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.6e-57
Identity = 125/259 (48.26%), Postives = 165/259 (63.71%), Query Frame = 1 

Query: 8   GIGNLAHTEQEHGTKNEDEDGIK-------TKRRPRGRPPGSKNKPKPPIVITKHTPNAF 67
           G  N     QE     +++  ++       T RRPRGRPPGSKNKPK P+V+TK +PN+ 
Sbjct: 56  GSPNTQTQSQEEQNSRDEQPAVEPGSGSGSTGRRPRGRPPGSKNKPKSPVVVTKESPNSL 115

Query: 68  QTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPP---GVITLHERFEI 127
           Q+HV EI T  D+A S++ FA RR RGVS+LS +GLV +VTLRQP    GV++L  +FEI
Sbjct: 116 QSHVLEIATGADVAESLNAFARRRGRGVSVLSGSGLVTNVTLRQPAASGGVVSLRGQFEI 175

Query: 128 LSLSGAFLPTP-SPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEK 187
           LS+ GAFLPT  SP  A  LT+YLAG QG+VVGG VAGPLIA+GPVIV+AA+F NA YE+
Sbjct: 176 LSMCGAFLPTSGSPAAAAGLTIYLAGAQGQVVGGGVAGPLIASGPVIVIAATFCNATYER 235

Query: 188 LPIEEDEENAEEKKLEEENINGNNSVGESSSVAAAAAAAATTTSLPVYNLIPN-----TQ 247
           LPIEE+++  +  +LE+    G     E+    +       +   P+YN+ PN      Q
Sbjct: 236 LPIEEEQQQEQPLQLED----GKKQKEENDDNESGNNGNEGSMQPPMYNMPPNFIPNGHQ 295

Query: 248 ISQ-EMFW-APLPLPPPSY 249
           ++Q +++W  P P  PPSY
Sbjct: 296 MAQHDVYWGGPPPRAPPSY 310

[Close]
BLAST of Cla006543 vs. Swiss-Prot
Match: AHL22_ARATH (AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-53
Identity = 110/233 (47.21%), Postives = 147/233 (63.09%), Query Frame = 1 

Query: 33  RRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSILS 92
           RRPRGRP GSKNKPKPPI+IT+ + NA ++HV E+    D+  S++ FA RR RG+ +LS
Sbjct: 89  RRPRGRPAGSKNKPKPPIIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLS 148

Query: 93  ATGLVADVTLRQP---PG----VITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQG 152
             G V +VT+RQP   PG    V+ LH RFEILSLSG+FLP P+P  A+ LT+YLAGGQG
Sbjct: 149 GNGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQG 208

Query: 153 RVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNNSVGES 212
           +VVGG V GPL+A+GPV+++AASF NA YE+LP+EED++  +       NI+GN ++G  
Sbjct: 209 QVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEEDDQEEQTAGAVANNIDGNATMGGG 268

Query: 213 SSVAAAAA----------AAATTTSLPVYNLIPNTQISQEMFWAPLPLPPPSY 249
           +                   +    LP  NL+ + Q+  E +W     P PS+
Sbjct: 269 TQTQTQTQQQQQQQLMQDPTSFIQGLPP-NLMNSVQLPAEAYWG---TPRPSF 317

[Close]
BLAST of Cla006543 vs. Swiss-Prot
Match: AHL19_ARATH (AT-hook motif nuclear-localized protein 19 OS=Arabidopsis thaliana GN=AHL19 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.1e-53
Identity = 112/240 (46.67%), Postives = 148/240 (61.67%), Query Frame = 1 

Query: 14  HTEQEHGTKNEDEDGIK-------------TKRRPRGRPPGSKNKPKPPIVITKHTPNAF 73
           H E ++   ++D D +                RRPRGRP GSKNKPKPPI +T+ +PNA 
Sbjct: 48  HQEVDNNNNDDDRDNLSGDDHEPREGAVEAPTRRPRGRPAGSKNKPKPPIFVTRDSPNAL 107

Query: 74  QTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQP--------PG---VI 133
           ++HV EI + TD+  +++TFA RR RG+ ILS  G VA+VTLRQP        PG   V+
Sbjct: 108 KSHVMEIASGTDVIETLATFARRRQRGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVL 167

Query: 134 TLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASF 193
            L  RFEILSL+G+FLP P+P G+T LT+YLAGGQG+VVGG V GPL+AAGPV+++AA+F
Sbjct: 168 ALQGRFEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATF 227

Query: 194 TNAMYEKLPIEEDEENAEEKKLEEENINGNNSVGESSSVAAAAAAAATTTSLPVYNLIPN 230
           +NA YE+LP+EE+E            +      G  S +++ A        LPVYN+  N
Sbjct: 228 SNATYERLPLEEEEAAERGGGGGSGGVVPGQLGGGGSPLSSGAGGGDGNQGLPVYNMPGN 287

[Close]
BLAST of Cla006543 vs. Swiss-Prot
Match: AHL18_ARATH (AT-hook motif nuclear-localized protein 18 OS=Arabidopsis thaliana GN=AHL18 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.1e-53
Identity = 111/214 (51.87%), Postives = 142/214 (66.36%), Query Frame = 1 

Query: 26  EDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRH 85
           E+ IK KRRPRGRP GSKNKPK PI++T+ + NAF+ HV EIT A D+  S++ FA RR 
Sbjct: 53  EENIK-KRRPRGRPAGSKNKPKAPIIVTRDSANAFRCHVMEITNACDVMESLAVFARRRQ 112

Query: 86  RGVSILSATGLVADVTLRQPPG-VITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQ 145
           RGV +L+  G V +VT+RQP G V++LH RFEILSLSG+FLP P+P  A+ L VYLAGGQ
Sbjct: 113 RGVCVLTGNGAVTNVTVRQPGGGVVSLHGRFEILSLSGSFLPPPAPPAASGLKVYLAGGQ 172

Query: 146 GRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNNSVGE 205
           G+V+GG V GPL A+ PV+V+AASF NA YE+LP+EE+EE        E  I+GN +   
Sbjct: 173 GQVIGGSVVGPLTASSPVVVMAASFGNASYERLPLEEEEET-------EREIDGNAARAI 232

Query: 206 SSSVAAAAAAAATTTSLPVYNLIPNTQISQEMFW 239
            +         AT+      NLI +  +  E +W
Sbjct: 233 GTQTQKQLMQDATSFIGSPSNLINSVSLPGEAYW 258

[Close]
BLAST of Cla006543 vs. Swiss-Prot
Match: AHL23_ARATH (AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana GN=AHL23 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.1e-53
Identity = 108/206 (52.43%), Postives = 141/206 (68.45%), Query Frame = 1 

Query: 33  RRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSILS 92
           RRPRGRPPGSKNKPKPP++IT+ + N  + H+ E+T   D+   ++T+A RR RG+ +LS
Sbjct: 82  RRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTNGCDVFDCVATYARRRQRGICVLS 141

Query: 93  ATGLVADVTLRQPPG---VITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQGRVVG 152
            +G V +V++RQP     V+TL   FEILSLSG+FLP P+P GATSLT++LAGGQG+VVG
Sbjct: 142 GSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVG 201

Query: 153 GLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNNSVGESSSVA 212
           G V G L AAGPVIV+AASFTN  YE+LP+EEDE   ++++L   +  G N   E   VA
Sbjct: 202 GSVVGELTAAGPVIVIAASFTNVAYERLPLEEDE---QQQQLGGGSNGGGNLFPE---VA 261

Query: 213 AAAAAAATTTSLPVYNLIPNTQISQE 236
           A         +LP+ N+ PN Q+  E
Sbjct: 262 AGGGGGLPFFNLPM-NMQPNVQLPVE 280

[Close]
BLAST of Cla006543 vs. TrEMBL
Match: A0A0A0K8D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008690 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.2e-96
Identity = 192/252 (76.19%), Postives = 207/252 (82.14%), Query Frame = 1 

Query: 6   WGGIGNLA-------HTEQEHGTKN-EDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTP 65
           WGGIGNL         TEQ+H TKN ED DG+K KRRPRGRP GSKNKPKPPI+I K TP
Sbjct: 4   WGGIGNLPTTPLEFQKTEQQHSTKNYEDGDGVKPKRRPRGRPRGSKNKPKPPILIAKITP 63

Query: 66  NAFQTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPPGVITLHERFEI 125
           N  QTHVFEI TATDIA SI TF  RR RGVSILSATGLV D+TLRQPPGVITLH+RFEI
Sbjct: 64  NTLQTHVFEIATATDIADSIFTFTQRRRRGVSILSATGLVTDITLRQPPGVITLHQRFEI 123

Query: 126 LSLSGAFLPTPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKL 185
           LSLSGAFLPTPSPHG ++LTVYLAG QGRVVGGLVAGP+IAAGPV+VVAASFTNAMYEKL
Sbjct: 124 LSLSGAFLPTPSPHGTSALTVYLAGDQGRVVGGLVAGPIIAAGPVVVVAASFTNAMYEKL 183

Query: 186 PIEEDEENAEEKKLEEENINGN-NSVGESSSVAAAAAAAATTTSLPVYNLIPNTQISQEM 245
           P+EE+EE  EE K  EENINGN NS+GESSS+AAA       +SL V+NLIPNTQISQE 
Sbjct: 184 PMEENEEKTEEDKQLEENINGNKNSMGESSSLAAA-------SSLGVHNLIPNTQISQET 243

Query: 246 FWAPLPLPPPSY 249
           FWA  P PPPSY
Sbjct: 244 FWA--PPPPPSY 246

[Close]
BLAST of Cla006543 vs. TrEMBL
Match: A0A0K9QWH0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133730 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 140/256 (54.69%), Postives = 179/256 (69.92%), Query Frame = 1 

Query: 28  GIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRG 87
           G  + RRPRGRPPGSKNKPKPPIVITK +PNA ++HV EI T  DIA S++TFA RRHRG
Sbjct: 77  GGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEINTGADIADSLATFAQRRHRG 136

Query: 88  VSILSATGLVADVTLRQPP---GVITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQ 147
           VS+LS +G+V +VTLRQP    GV+TLH RFEILSLSGAFLP+PSP GAT LTVYLAGGQ
Sbjct: 137 VSVLSGSGIVTNVTLRQPAAPGGVVTLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQ 196

Query: 148 GRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEK-----------KLEE 207
           G+VVGG V GPL+A+GPV+V+AA+F+NA YE+LP+E+ E NA  +           +  +
Sbjct: 197 GQVVGGGVVGPLVASGPVLVIAATFSNATYERLPVEDQETNAAPEGNVVDAGGAPPEAVQ 256

Query: 208 ENINGNNSV---------------GESSSVAAAAAAAATTTSLPV------YNLIPNTQI 249
           + ++G  +                G +++  AAAAA  +T+S+P+       NL+PN Q+
Sbjct: 257 QQVSGGGTASQQSHGSGSGLVAGGGTATAATAAAAADQSTSSMPMPIFNLPPNLLPNGQM 316

[Close]
BLAST of Cla006543 vs. TrEMBL
Match: B9HT77_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20780g PE=4 SV=2)

HSP 1 Score: 264.2 bits (674), Expect = 1.6e-67
Identity = 137/235 (58.30%), Postives = 169/235 (71.91%), Query Frame = 1 

Query: 31  TKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSI 90
           T RRPRGRP GSKNKPKPPIVITK +PN+  +HV EI++ +DI  SI+TF+HRRHRGVSI
Sbjct: 102 TSRRPRGRPAGSKNKPKPPIVITKESPNSLHSHVLEISSGSDIVESIATFSHRRHRGVSI 161

Query: 91  LSATGLVADVTLRQPP---GVITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQGRV 150
           LS +G+V +VTLRQP    GVITLH RFEILSLSG+FLP PSP GAT LTVYLAGGQG+V
Sbjct: 162 LSGSGIVNNVTLRQPAAPGGVITLHGRFEILSLSGSFLPAPSPPGATGLTVYLAGGQGQV 221

Query: 151 VGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNN------- 210
           VGG V G LIAAGPV+V+AA+F+NA YE+LP+EE E+   + + +  +   NN       
Sbjct: 222 VGGTVMGELIAAGPVMVIAATFSNATYERLPLEEQEQEGMQLQQQVNSPGTNNGNAAAGG 281

Query: 211 ---SVGESSSVAAAAAAAATTTSLPVY----NLIPNTQISQEMFWAPLPLPPPSY 249
              S G ++SV  ++       S+P Y    NL+PN Q+  +MFW P P PPPSY
Sbjct: 282 GASSGGGNNSVTQSSQGLGEHVSIPGYNLPPNLLPNGQVPHDMFWCPPPRPPPSY 336

[Close]
BLAST of Cla006543 vs. TrEMBL
Match: A0A072V017_MEDTR (AT hook motif DNA-binding family protein OS=Medicago truncatula GN=MTR_3g068035 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.6e-67
Identity = 142/261 (54.41%), Postives = 185/261 (70.88%), Query Frame = 1 

Query: 11  NLAHTEQEHGTKNEDEDGIKTK-RRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITT 70
           N    +  +  +N  E G  +  RRPRGRPPGSKNKPKPPIVITK +PNA ++HV EI++
Sbjct: 56  NNEEEDNNNEEQNPSEPGSSSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISS 115

Query: 71  ATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPP---GVITLHERFEILSLSGAFLP 130
            +D+A SI+TFA+RRHRGVS+LS +G+VA+VTLRQP    GVITLH RFEILSLSGAFLP
Sbjct: 116 GSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLSGAFLP 175

Query: 131 TPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENA 190
            PSP GAT LTVYLAGGQG+VVGG VAGPL+A+GPV+V+AA+F NA YE+LP+E+++   
Sbjct: 176 PPSPAGATGLTVYLAGGQGQVVGGSVAGPLVASGPVMVIAATFANATYERLPLEDEQGGG 235

Query: 191 EEKKLEEENINGNNSVGESSSVAAAAAAAAT-------------TTSLPVYNLIPN---- 249
           ++   EE  +    S  +S++VAAA  + ++               S+P+YNL PN    
Sbjct: 236 DQ---EEMQVQVQQSGVDSATVAAAVTSTSSQGLELGEHHQQLQQVSMPMYNLPPNLLHN 295

[Close]
BLAST of Cla006543 vs. TrEMBL
Match: A0A067LCE8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01418 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.7e-67
Identity = 137/244 (56.15%), Postives = 179/244 (73.36%), Query Frame = 1 

Query: 24  EDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHR 83
           E   G  + RRPRGRPPGSKNKPKPP+VITK +PN+ ++HV EI++ +DIA SIS FA R
Sbjct: 99  EPGGGGSSSRRPRGRPPGSKNKPKPPVVITKESPNSLRSHVLEISSGSDIAESISNFAQR 158

Query: 84  RHRGVSILSATGLVADVTLRQPP---GVITLHERFEILSLSGAFLPTPSPHGATSLTVYL 143
           RHRGVSILS +G+V +VTLRQP    GVITLH RFEILSLSG+FLP PSP GAT LTVYL
Sbjct: 159 RHRGVSILSGSGIVTNVTLRQPAAPGGVITLHGRFEILSLSGSFLPAPSPPGATGLTVYL 218

Query: 144 AGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNN 203
           AGGQG+VVGG V G L+AAGPV+V+AA+F+NA +E+LP+EE E++ ++ + +++  +G N
Sbjct: 219 AGGQGQVVGGTVVGQLVAAGPVMVIAATFSNATFERLPLEE-EQDGQQLQQQQQVTSGTN 278

Query: 204 ------------SVGESSSVAAAAAAAATTTSLPVY----NLIPNTQISQEMFWAPLPLP 249
                       S G ++S + ++   A   S+PV+    NL+PN Q+  E+FWAP P P
Sbjct: 279 AAAAGGSSGSGGSGGANNSGSQSSQPIAEAGSMPVFNLPPNLLPNGQMPHEVFWAPPPRP 338

[Close]
BLAST of Cla006543 vs. NCBI nr
Match: gi|659081550|ref|XP_008441388.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo])

HSP 1 Score: 377.9 bits (969), Expect = 1.4e-101
Identity = 197/251 (78.49%), Postives = 212/251 (84.46%), Query Frame = 1 

Query: 6   WGGIGNLA-------HTEQEHGTKN-EDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTP 65
           WGGIGNLA        TEQ+H TK+ ED DG+K KRRPRGRPPGSKNKPKPPI+I K+TP
Sbjct: 4   WGGIGNLAITPLDLQKTEQQHTTKDHEDGDGVKAKRRPRGRPPGSKNKPKPPILIAKNTP 63

Query: 66  NAFQTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPPGVITLHERFEI 125
           N  QTHVFEI TATDIAHSI TFAHRR RGVSILSATGLV DVTLRQPPGVITLH+RFEI
Sbjct: 64  NTLQTHVFEIATATDIAHSICTFAHRRRRGVSILSATGLVDDVTLRQPPGVITLHQRFEI 123

Query: 126 LSLSGAFLPTPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKL 185
           LSLSGAFLPTPSPHG ++LTVYLAGGQGRVVGGLVAGPLIAA PV+VVAASFTNAMYEKL
Sbjct: 124 LSLSGAFLPTPSPHGTSALTVYLAGGQGRVVGGLVAGPLIAAAPVVVVAASFTNAMYEKL 183

Query: 186 PIEEDEENAEEKKLEEENINGNNSVGESSSVAAAAAAAATTTSLPVYNLIPNTQISQEMF 245
           P+EEDEE  E+ K  EENINGNNS+GESSS+AAA       +SL V+NL PNTQISQEMF
Sbjct: 184 PMEEDEEKTEKDKQLEENINGNNSMGESSSLAAA-------SSLGVHNLTPNTQISQEMF 243

Query: 246 WAPLPLPPPSY 249
           WA    PPPSY
Sbjct: 244 WA----PPPSY 243

[Close]
BLAST of Cla006543 vs. NCBI nr
Match: gi|778721954|ref|XP_011658381.1| (PREDICTED: AT-hook motif nuclear-localized protein 15 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 1.8e-96
Identity = 192/252 (76.19%), Postives = 207/252 (82.14%), Query Frame = 1 

Query: 6   WGGIGNLA-------HTEQEHGTKN-EDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTP 65
           WGGIGNL         TEQ+H TKN ED DG+K KRRPRGRP GSKNKPKPPI+I K TP
Sbjct: 4   WGGIGNLPTTPLEFQKTEQQHSTKNYEDGDGVKPKRRPRGRPRGSKNKPKPPILIAKITP 63

Query: 66  NAFQTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPPGVITLHERFEI 125
           N  QTHVFEI TATDIA SI TF  RR RGVSILSATGLV D+TLRQPPGVITLH+RFEI
Sbjct: 64  NTLQTHVFEIATATDIADSIFTFTQRRRRGVSILSATGLVTDITLRQPPGVITLHQRFEI 123

Query: 126 LSLSGAFLPTPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKL 185
           LSLSGAFLPTPSPHG ++LTVYLAG QGRVVGGLVAGP+IAAGPV+VVAASFTNAMYEKL
Sbjct: 124 LSLSGAFLPTPSPHGTSALTVYLAGDQGRVVGGLVAGPIIAAGPVVVVAASFTNAMYEKL 183

Query: 186 PIEEDEENAEEKKLEEENINGN-NSVGESSSVAAAAAAAATTTSLPVYNLIPNTQISQEM 245
           P+EE+EE  EE K  EENINGN NS+GESSS+AAA       +SL V+NLIPNTQISQE 
Sbjct: 184 PMEENEEKTEEDKQLEENINGNKNSMGESSSLAAA-------SSLGVHNLIPNTQISQET 243

Query: 246 FWAPLPLPPPSY 249
           FWA  P PPPSY
Sbjct: 244 FWA--PPPPPSY 246

[Close]
BLAST of Cla006543 vs. NCBI nr
Match: gi|902190380|gb|KNA11599.1| (hypothetical protein SOVF_133730 [Spinacia oleracea])

HSP 1 Score: 267.7 bits (683), Expect = 2.0e-68
Identity = 140/256 (54.69%), Postives = 179/256 (69.92%), Query Frame = 1 

Query: 28  GIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRG 87
           G  + RRPRGRPPGSKNKPKPPIVITK +PNA ++HV EI T  DIA S++TFA RRHRG
Sbjct: 77  GGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEINTGADIADSLATFAQRRHRG 136

Query: 88  VSILSATGLVADVTLRQPP---GVITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQ 147
           VS+LS +G+V +VTLRQP    GV+TLH RFEILSLSGAFLP+PSP GAT LTVYLAGGQ
Sbjct: 137 VSVLSGSGIVTNVTLRQPAAPGGVVTLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQ 196

Query: 148 GRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEK-----------KLEE 207
           G+VVGG V GPL+A+GPV+V+AA+F+NA YE+LP+E+ E NA  +           +  +
Sbjct: 197 GQVVGGGVVGPLVASGPVLVIAATFSNATYERLPVEDQETNAAPEGNVVDAGGAPPEAVQ 256

Query: 208 ENINGNNSV---------------GESSSVAAAAAAAATTTSLPV------YNLIPNTQI 249
           + ++G  +                G +++  AAAAA  +T+S+P+       NL+PN Q+
Sbjct: 257 QQVSGGGTASQQSHGSGSGLVAGGGTATAATAAAAADQSTSSMPMPIFNLPPNLLPNGQM 316

[Close]
BLAST of Cla006543 vs. NCBI nr
Match: gi|922380940|ref|XP_013460699.1| (AT hook motif DNA-binding family protein [Medicago truncatula])

HSP 1 Score: 264.2 bits (674), Expect = 2.2e-67
Identity = 142/261 (54.41%), Postives = 185/261 (70.88%), Query Frame = 1 

Query: 11  NLAHTEQEHGTKNEDEDGIKTK-RRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITT 70
           N    +  +  +N  E G  +  RRPRGRPPGSKNKPKPPIVITK +PNA ++HV EI++
Sbjct: 56  NNEEEDNNNEEQNPSEPGSSSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISS 115

Query: 71  ATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPP---GVITLHERFEILSLSGAFLP 130
            +D+A SI+TFA+RRHRGVS+LS +G+VA+VTLRQP    GVITLH RFEILSLSGAFLP
Sbjct: 116 GSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLSGAFLP 175

Query: 131 TPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENA 190
            PSP GAT LTVYLAGGQG+VVGG VAGPL+A+GPV+V+AA+F NA YE+LP+E+++   
Sbjct: 176 PPSPAGATGLTVYLAGGQGQVVGGSVAGPLVASGPVMVIAATFANATYERLPLEDEQGGG 235

Query: 191 EEKKLEEENINGNNSVGESSSVAAAAAAAAT-------------TTSLPVYNLIPN---- 249
           ++   EE  +    S  +S++VAAA  + ++               S+P+YNL PN    
Sbjct: 236 DQ---EEMQVQVQQSGVDSATVAAAVTSTSSQGLELGEHHQQLQQVSMPMYNLPPNLLHN 295

[Close]
BLAST of Cla006543 vs. NCBI nr
Match: gi|566191893|ref|XP_002315208.2| (hypothetical protein POPTR_0010s20780g [Populus trichocarpa])

HSP 1 Score: 264.2 bits (674), Expect = 2.2e-67
Identity = 137/235 (58.30%), Postives = 169/235 (71.91%), Query Frame = 1 

Query: 31  TKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSI 90
           T RRPRGRP GSKNKPKPPIVITK +PN+  +HV EI++ +DI  SI+TF+HRRHRGVSI
Sbjct: 102 TSRRPRGRPAGSKNKPKPPIVITKESPNSLHSHVLEISSGSDIVESIATFSHRRHRGVSI 161

Query: 91  LSATGLVADVTLRQPP---GVITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQGRV 150
           LS +G+V +VTLRQP    GVITLH RFEILSLSG+FLP PSP GAT LTVYLAGGQG+V
Sbjct: 162 LSGSGIVNNVTLRQPAAPGGVITLHGRFEILSLSGSFLPAPSPPGATGLTVYLAGGQGQV 221

Query: 151 VGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNN------- 210
           VGG V G LIAAGPV+V+AA+F+NA YE+LP+EE E+   + + +  +   NN       
Sbjct: 222 VGGTVMGELIAAGPVMVIAATFSNATYERLPLEEQEQEGMQLQQQVNSPGTNNGNAAAGG 281

Query: 211 ---SVGESSSVAAAAAAAATTTSLPVY----NLIPNTQISQEMFWAPLPLPPPSY 249
              S G ++SV  ++       S+P Y    NL+PN Q+  +MFW P P PPPSY
Sbjct: 282 GASSGGGNNSVTQSSQGLGEHVSIPGYNLPPNLLPNGQVPHDMFWCPPPRPPPSY 336

The following BLAST results are available for this feature:
BLAST of Cla006543 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AHL15_ARATH3.6e-5748.26AT-hook motif nuclear-localized protein 15 OS=Arabidopsis thaliana GN=AHL15 PE=2... [more]
AHL22_ARATH2.4e-5347.21AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1... [more]
AHL19_ARATH3.1e-5346.67AT-hook motif nuclear-localized protein 19 OS=Arabidopsis thaliana GN=AHL19 PE=2... [more]
AHL18_ARATH4.1e-5351.87AT-hook motif nuclear-localized protein 18 OS=Arabidopsis thaliana GN=AHL18 PE=2... [more]
AHL23_ARATH9.1e-5352.43AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana GN=AHL23 PE=1... [more]
BLAST of Cla006543 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8D4_CUCSA1.2e-9676.19Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008690 PE=4 SV=1[more]
A0A0K9QWH0_SPIOL1.4e-6854.69Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133730 PE=4 SV=1[more]
B9HT77_POPTR1.6e-6758.30Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20780g PE=4 SV=2[more]
A0A072V017_MEDTR1.6e-6754.41AT hook motif DNA-binding family protein OS=Medicago truncatula GN=MTR_3g068035 ... [more]
A0A067LCE8_JATCU2.7e-6756.15Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01418 PE=4 SV=1[more]
BLAST of Cla006543 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081550|ref|XP_008441388.1|1.4e-10178.49PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo][more]
gi|778721954|ref|XP_011658381.1|1.8e-9676.19PREDICTED: AT-hook motif nuclear-localized protein 15 [Cucumis sativus][more]
gi|902190380|gb|KNA11599.1|2.0e-6854.69hypothetical protein SOVF_133730 [Spinacia oleracea][more]
gi|922380940|ref|XP_013460699.1|2.2e-6754.41AT hook motif DNA-binding family protein [Medicago truncatula][more]
gi|566191893|ref|XP_002315208.2|2.2e-6758.30hypothetical protein POPTR_0010s20780g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005175PPC_dom
IPR014476AT-hook_nuclear
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045824 negative regulation of innate immune response
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006952 defense response
biological_process GO:0042742 defense response to bacterium
biological_process GO:0002376 immune system process
biological_process GO:0045087 innate immune response
biological_process GO:1900425 negative regulation of defense response to bacterium
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003680 AT DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006543Cla006543.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005175PPC domainPFAMPF03479DUF296coord: 62..170
score: 9.7
IPR005175PPC domainPROFILEPS51742PPCcoord: 57..192
score: 29
IPR014476AT-hook motif nuclear-localised proteinPIRPIRSF016021ESCAROLAcoord: 9..241
score: 3.5
NoneNo IPR availableunknownCoilCoilcoord: 179..199
scor
NoneNo IPR availableGENE3DG3DSA:3.30.1330.80coord: 61..183
score: 4.7
NoneNo IPR availablePANTHERPTHR31100FAMILY NOT NAMEDcoord: 15..246
score: 1.9E
NoneNo IPR availablePANTHERPTHR31100:SF13AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 15coord: 15..246
score: 1.9E
NoneNo IPR availableunknownSSF117856AF0104/ALDC/Ptd012-likecoord: 57..183
score: 1.91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006543Cla97C07G131830Watermelon (97103) v2wmwmbB380
Cla006543Cla97C11G213680Watermelon (97103) v2wmwmbB362
Cla006543Csa6G008690Cucumber (Chinese Long) v2cuwmB533
Cla006543MELO3C008232Melon (DHL92) v3.5.1mewmB328
Cla006543ClCG07G003540Watermelon (Charleston Gray)wcgwmB392
Cla006543ClCG11G006720Watermelon (Charleston Gray)wcgwmB108
Cla006543CSPI06G01190Wild cucumber (PI 183967)cpiwmB552
Cla006543CSPI05G09840Wild cucumber (PI 183967)cpiwmB448
Cla006543Cucsa.136170Cucumber (Gy14) v1cgywmB234
Cla006543Cucsa.165130Cucumber (Gy14) v1cgywmB312
Cla006543CmaCh04G002000Cucurbita maxima (Rimu)cmawmB742
Cla006543CmaCh04G011690Cucurbita maxima (Rimu)cmawmB740
Cla006543CmaCh15G001030Cucurbita maxima (Rimu)cmawmB283
Cla006543CmoCh04G012390Cucurbita moschata (Rifu)cmowmB734
Cla006543CmoCh04G030670Cucurbita moschata (Rifu)cmowmB731
Cla006543CmoCh15G001110Cucurbita moschata (Rifu)cmowmB274
Cla006543CmoCh04G002020Cucurbita moschata (Rifu)cmowmB737
Cla006543Lsi04G009030Bottle gourd (USVL1VR-Ls)lsiwmB338
Cla006543Lsi03G003610Bottle gourd (USVL1VR-Ls)lsiwmB277
Cla006543Cp4.1LG13g10960Cucurbita pepo (Zucchini)cpewmB196
Cla006543Cp4.1LG01g25540Cucurbita pepo (Zucchini)cpewmB461
Cla006543Cp4.1LG01g10920Cucurbita pepo (Zucchini)cpewmB464
Cla006543Cp4.1LG01g05040Cucurbita pepo (Zucchini)cpewmB467
Cla006543CsGy6G001230Cucumber (Gy14) v2cgybwmB497
Cla006543CsGy5G007200Cucumber (Gy14) v2cgybwmB407
Cla006543MELO3C008232.2Melon (DHL92) v3.6.1medwmB325
Cla006543Carg06017Silver-seed gourdcarwmB0024
Cla006543Carg00252Silver-seed gourdcarwmB0673
Cla006543Carg02091Silver-seed gourdcarwmB0261
Cla006543CsaV3_6G001310Cucumber (Chinese Long) v3cucwmB558
Cla006543CsaV3_5G008290Cucumber (Chinese Long) v3cucwmB459
Cla006543Bhi04G001947Wax gourdwgowmB347
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla006543Cla003993Watermelon (97103) v1wmwmB113
The following block(s) are covering this gene:
GeneOrganismBlock
Cla006543Silver-seed gourdcarwmB0153
Cla006543Silver-seed gourdcarwmB0583
Cla006543Cucumber (Chinese Long) v3cucwmB284
Cla006543Watermelon (97103) v2wmwmbB357
Cla006543Watermelon (97103) v1wmwmB055
Cla006543Watermelon (97103) v1wmwmB155
Cla006543Cucumber (Gy14) v1cgywmB340
Cla006543Cucurbita maxima (Rimu)cmawmB249
Cla006543Cucurbita maxima (Rimu)cmawmB648
Cla006543Cucurbita maxima (Rimu)cmawmB737
Cla006543Cucurbita maxima (Rimu)cmawmB809
Cla006543Cucurbita maxima (Rimu)cmawmB846
Cla006543Cucurbita moschata (Rifu)cmowmB238
Cla006543Cucurbita moschata (Rifu)cmowmB642
Cla006543Cucurbita moschata (Rifu)cmowmB800
Cla006543Cucurbita moschata (Rifu)cmowmB835
Cla006543Wild cucumber (PI 183967)cpiwmB276
Cla006543Melon (DHL92) v3.5.1mewmB385
Cla006543Watermelon (Charleston Gray)wcgwmB080
Cla006543Watermelon (Charleston Gray)wcgwmB266
Cla006543Cucumber (Chinese Long) v2cuwmB275
Cla006543Cucurbita pepo (Zucchini)cpewmB621
Cla006543Bottle gourd (USVL1VR-Ls)lsiwmB276
Cla006543Cucumber (Gy14) v2cgybwmB257
Cla006543Melon (DHL92) v3.6.1medwmB379