Cla006515 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006515
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ribulose-phosphate 3-epimerase (AHRD V1 ***- A9PIC8_POPTR); contains Interpro domain(s) IPR000056 Ribulose-phosphate 3-epimerase
Location	Chr11 : 742466 .. 743793 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTACAAATCCTCTTGATTACGTTGAACCCTTAGCAAAAGCTGGTGCTTCAGGCTTTACATTTCACGTTGAAGTATCCAAAGGTACATTGTGTTTGGACTTCAGATTTATTCAACTTCTATAGCATCAAAGTTGATTATGTTTTCTTTCCCTCTTCTCGGGTAGACAATTGGCAGCAATTAATTCAAGAAATTAAGTCAAAGGGCATGAAGTCAGGGGTAGCGCTAAAACCTGGAACACCCATTGAAGAAGTTTATCCTTTGGTATGCAATTGATCTTTTCATCTTCTCCTCCAGTTTCATATTCTTCATTTACGAGAATGTTATATTTCATTGATGTGGTATAAGATCCTATTCATCTAATATAGCCCAACTAAATGCTGTGCAAATGCTACTGCATCAAAAAAATTTATAATTGTTATGTGATGCTTGTTCTTTCTTTAATTTCAGGTAGAAAGTGAAAATCCTGTGGAAATGGTCCTTGTTATGACGGTCGAACCTGGTTTTGGTGGCCAAAAGTTCATGCCAGAAACGATGGATAAGGTTCCATTGCTTGACATTTTCAATATTCCTTGAGTTTTGTTTGATTGGCATTTCTTGTTATCTTGTTACTGATTTTAACTTATTCAGGTACGGAATTTAAGACAGAAGTACCCATCTCTTGACATTGAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATATTAATACCTTTCAATTTTCTGCAACCTCAACGTGATTCTTGGGTACCTTGGGAAGTGTTCTAAATATATTAAAACTCTGTGCTTGCTGAAGTGGAGATTAAAAAAGTCACTCCCAGTTAATAATAGAATTTGTTCACGTTAATTTTAACTTTGGCTGTAACCTTTCTCTGGTTCCATTTCACTCTATAGTATTTGATATGAGAAGTCACTCTTTTCTGCTACAAACATGGTTCCAATCACCAGTCTTTTAAGCCCTCGTAAAATTTTCCCATGATAAAGTAATATGTTCAAAAGATCAAACCAATCTTGCAAGTAGACCTTGAATGCAATCTTTTTATGCTACCAGGACTGTGCAAACTGTATGTAGCGTACTCGTTGCAGGTCAAATTCAGTGTCAGATGGCTGTATGAGGGATGGTTTCTGACTGGTCATTTTTGCTTTGGTGGGCAGGTGGATGGCGGGTTGGGACCTTCTACCATAGATGCAGCAGCTTCAGCTGGGGCAAACTGCATTGTTGCAGGAAGTTCGGTGTTTGGAGCTCCGGAGCCTTCCAAAGTTATATCCATTCTGAGGAAAAGTGTTGAGGATGCCCAGCAGAACTCTTGA

mRNA sequence

ATGGTTACAAATCCTCTTGATTACGTTGAACCCTTAGCAAAAGCTGGTGCTTCAGGCTTTACATTTCACGTTGAAGTATCCAAAGACAATTGGCAGCAATTAATTCAAGAAATTAAGTCAAAGGGCATGAAGTCAGGGGTAGCGCTAAAACCTGGAACACCCATTGAAGAAGTTTATCCTTTGGTAGAAAGTGAAAATCCTGTGGAAATGGTCCTTGTTATGACGGTCGAACCTGGTTTTGGTGGCCAAAAGTTCATGCCAGAAACGATGGATAAGGTACGGAATTTAAGACAGAAGTACCCATCTCTTGACATTGAGGTGGATGGCGGGTTGGGACCTTCTACCATAGATGCAGCAGCTTCAGCTGGGGCAAACTGCATTGTTGCAGGAAGTTCGGTGTTTGGAGCTCCGGAGCCTTCCAAAGTTATATCCATTCTGAGGAAAAGTGTTGAGGATGCCCAGCAGAACTCTTGA

Coding sequence (CDS)

ATGGTTACAAATCCTCTTGATTACGTTGAACCCTTAGCAAAAGCTGGTGCTTCAGGCTTTACATTTCACGTTGAAGTATCCAAAGACAATTGGCAGCAATTAATTCAAGAAATTAAGTCAAAGGGCATGAAGTCAGGGGTAGCGCTAAAACCTGGAACACCCATTGAAGAAGTTTATCCTTTGGTAGAAAGTGAAAATCCTGTGGAAATGGTCCTTGTTATGACGGTCGAACCTGGTTTTGGTGGCCAAAAGTTCATGCCAGAAACGATGGATAAGGTACGGAATTTAAGACAGAAGTACCCATCTCTTGACATTGAGGTGGATGGCGGGTTGGGACCTTCTACCATAGATGCAGCAGCTTCAGCTGGGGCAAACTGCATTGTTGCAGGAAGTTCGGTGTTTGGAGCTCCGGAGCCTTCCAAAGTTATATCCATTCTGAGGAAAAGTGTTGAGGATGCCCAGCAGAACTCTTGA

Protein sequence

MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYPLVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAASAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS

Homology

[Close]

BLAST of Cla006515 vs. Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.2e-71
Identity = 129/157 (82.17%), Postives = 143/157 (91.08%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNP DYVEPLAKAGASGFTFH+EVS+DNWQ+LIQ IK+KGM+ GV+L+PGTP+EEV+P
Sbjct: 72  MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 131

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVE+ENPVE+VLVMTVEPGFGGQKFMPE M+KVR LR+KYPSLDIEVDGGLGPSTID AA
Sbjct: 132 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 191

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSS+FGA EP +VIS LRKSVE +Q  S
Sbjct: 192 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228

[Close]

BLAST of Cla006515 vs. Swiss-Prot
Match: RPE_SCHPO (Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.0e-38
Identity = 86/155 (55.48%), Postives = 106/155 (68.39%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MV  P  Y++ LA AGAS F FH E ++ + +++I     KGM  G ALKP TP+E + P
Sbjct: 72  MVIEPERYIDQLADAGASLFCFHYEATEKH-EEIISRAHEKGMLVGCALKPKTPVEVILP 131

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
            VE    ++MVLVMTVEPG GGQ FMPE + KV  LR+KYP+L++EVDGGL   T+DAAA
Sbjct: 132 FVEK---LDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAA 191

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQ 156
            AGAN IVAG++VF A  P +VIS LR SV  AQ+
Sbjct: 192 DAGANVIVAGTAVFHAQSPEEVISGLRNSVMKAQE 222

[Close]

BLAST of Cla006515 vs. Swiss-Prot
Match: RPE_HUMAN (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.8e-37
Identity = 79/155 (50.97%), Postives = 108/155 (69.68%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MV+ P  +V+P+A AGA+ +TFH+E + +N   LI++I+  GMK G+A+KPGT +E + P
Sbjct: 72  MVSKPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 131

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
                N ++M LVMTVEPGFGGQKFM + M KV  LR ++PSLDIEVDGG+GP T+   A
Sbjct: 132 WA---NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 191

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQ 156
            AGAN IV+GS++  + +P  VI++LR    +A Q
Sbjct: 192 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQ 222

[Close]

BLAST of Cla006515 vs. Swiss-Prot
Match: RPE_MOUSE (Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-36
Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MV+ P  +V+P+A AGA+ +TFH+E + +N   LI++I+  GMK G+A+KPGT +E + P
Sbjct: 72  MVSRPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTTVEYLAP 131

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
                N ++M LVMTVEPGFGGQKFM + M KV  LR ++P+LDIEVDGG+GP T+   A
Sbjct: 132 WA---NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCA 191

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQ 156
            AGAN IV+GS++  + +P  VI++LR    +A Q
Sbjct: 192 EAGANMIVSGSAIMRSDDPRAVINLLRNVCSEAAQ 222

[Close]

BLAST of Cla006515 vs. Swiss-Prot
Match: RPE_PONAB (Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-36
Identity = 78/155 (50.32%), Postives = 107/155 (69.03%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MV+ P  +V+P+A AGA+ + FH+E + +N   LI++I+  GMK G+A+KPGT +E + P
Sbjct: 72  MVSKPEQWVKPMAVAGANQYAFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 131

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
                N ++M LVMTVEPGFGGQKFM + M KV  LR ++PSLDIEVDGG+GP T+   A
Sbjct: 132 WA---NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 191

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQ 156
            AGAN IV+GS++  + +P  VI++LR    +A Q
Sbjct: 192 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQ 222

[Close]

BLAST of Cla006515 vs. TrEMBL
Match: A0A0A0LMZ3_CUCSA (Ribulose-phosphate 3-epimerase OS=Cucumis sativus GN=Csa_2G406760 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.5e-79
Identity = 151/157 (96.18%), Postives = 155/157 (98.73%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP
Sbjct: 70  MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 129

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVESENPV++VLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA
Sbjct: 130 LVESENPVDLVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 189

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSSVFGAPEPS+VISILR SVE+AQQ S
Sbjct: 190 SAGANCIVAGSSVFGAPEPSEVISILRNSVEEAQQKS 226

[Close]

BLAST of Cla006515 vs. TrEMBL
Match: A0A067EP20_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031549mg PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.6e-72
Identity = 135/157 (85.99%), Postives = 146/157 (92.99%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVE+SKDNWQ+L+Q IKSKGM+ GVALKPGT +EEVYP
Sbjct: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVE  NPVEMVLVMTVEPGFGGQKFMPE MDKVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSSVFGAPEP+ VIS++RKSVEDAQ+NS
Sbjct: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157

[Close]

BLAST of Cla006515 vs. TrEMBL
Match: A9PIC8_POPTR (Ribulose-phosphate 3-epimerase OS=Populus trichocarpa GN=POPTR_0001s34010g PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.6e-72
Identity = 135/157 (85.99%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVEVS+DNW  L+Q IKSKGM+ GV+LKPGTPIEEVYP
Sbjct: 70  MVTNPLDYVEPLGKAGASGFTFHVEVSRDNWGDLVQRIKSKGMRPGVSLKPGTPIEEVYP 129

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVE ENPVEMVLVMTVEPGFGGQKFMPETMDKVR LR+KYPSLDIEVDGGLGPSTID AA
Sbjct: 130 LVEGENPVEMVLVMTVEPGFGGQKFMPETMDKVRTLRKKYPSLDIEVDGGLGPSTIDMAA 189

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSSVFGAP+ ++VIS+LRKSVE+ Q+N+
Sbjct: 190 SAGANCIVAGSSVFGAPDSAQVISLLRKSVEEVQKNN 226

[Close]

BLAST of Cla006515 vs. TrEMBL
Match: A0A0K9QVL5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136520 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.6e-72
Identity = 136/155 (87.74%), Postives = 147/155 (94.84%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVEVSKDNWQ+L+++IKSKGMK GVALKPGTPIEEVYP
Sbjct: 1   MVTNPLDYVEPLGKAGASGFTFHVEVSKDNWQELVEKIKSKGMKPGVALKPGTPIEEVYP 60

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVE  NPVEMVL+MTVEPGFGGQKFM ETMDKV  LR+KYPSLDIEVDGGLGPSTIDAAA
Sbjct: 61  LVEGHNPVEMVLIMTVEPGFGGQKFMLETMDKVCALRKKYPSLDIEVDGGLGPSTIDAAA 120

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQ 156
           SAGANCIVAGSSVFGAPEP++VI +LRK+VE+AQQ
Sbjct: 121 SAGANCIVAGSSVFGAPEPAQVIKLLRKTVEEAQQ 155

[Close]

BLAST of Cla006515 vs. TrEMBL
Match: V4TIU2_9ROSI (Ribulose-phosphate 3-epimerase OS=Citrus clementina GN=CICLE_v10016576mg PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-71
Identity = 135/157 (85.99%), Postives = 145/157 (92.36%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVE+SKDNWQ+L+Q IKSKGM+ GVALKPGT +EEVYP
Sbjct: 70  MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 129

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVE  NPVEMVLVMTVEPGFGGQKFMPE MDKVR LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 130 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTLRNRYPSLDIEVDGGLGPSTIAEAA 189

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSSVFGAPEP+ VIS++RKSVEDAQ+NS
Sbjct: 190 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 226

[Close]

BLAST of Cla006515 vs. NCBI nr
Match: gi|659081475|ref|XP_008441351.1| (PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-79
Identity = 151/157 (96.18%), Postives = 155/157 (98.73%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTP+EEVYP
Sbjct: 70  MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPVEEVYP 129

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVESENPVE+VLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAA 
Sbjct: 130 LVESENPVELVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAT 189

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSSVFGAPEPS+VISILRKSVE+AQQ S
Sbjct: 190 SAGANCIVAGSSVFGAPEPSEVISILRKSVEEAQQKS 226

[Close]

BLAST of Cla006515 vs. NCBI nr
Match: gi|449441680|ref|XP_004138610.1| (PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 3.6e-79
Identity = 151/157 (96.18%), Postives = 155/157 (98.73%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP
Sbjct: 70  MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 129

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVESENPV++VLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA
Sbjct: 130 LVESENPVDLVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 189

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSSVFGAPEPS+VISILR SVE+AQQ S
Sbjct: 190 SAGANCIVAGSSVFGAPEPSEVISILRNSVEEAQQKS 226

[Close]

BLAST of Cla006515 vs. NCBI nr
Match: gi|695073361|ref|XP_009383844.1| (PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Musa acuminata subsp. malaccensis])

HSP 1 Score: 278.9 bits (712), Expect = 5.6e-72
Identity = 138/157 (87.90%), Postives = 146/157 (92.99%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPLAKAGASGFTFHVEV+KD WQ L+ +IK KGM+ GVALKPGTP+EEVYP
Sbjct: 70  MVTNPLDYVEPLAKAGASGFTFHVEVAKDYWQDLVHQIKVKGMRPGVALKPGTPVEEVYP 129

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVE ENPVEMVLVMTVEPGFGGQKFMPETMDKVR LR+KYPSLDIEVDGGLGPSTID AA
Sbjct: 130 LVEGENPVEMVLVMTVEPGFGGQKFMPETMDKVRALRKKYPSLDIEVDGGLGPSTIDMAA 189

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSSVFGA EP+ VISILRKSV DAQQ+S
Sbjct: 190 SAGANCIVAGSSVFGAKEPANVISILRKSVRDAQQSS 226

[Close]

BLAST of Cla006515 vs. NCBI nr
Match: gi|641836653|gb|KDO55615.1| (hypothetical protein CISIN_1g031549mg [Citrus sinensis])

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-71
Identity = 135/157 (85.99%), Postives = 146/157 (92.99%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVE+SKDNWQ+L+Q IKSKGM+ GVALKPGT +EEVYP
Sbjct: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVE  NPVEMVLVMTVEPGFGGQKFMPE MDKVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQNS 158
           SAGANCIVAGSSVFGAPEP+ VIS++RKSVEDAQ+NS
Sbjct: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157

[Close]

BLAST of Cla006515 vs. NCBI nr
Match: gi|902189144|gb|KNA11295.1| (hypothetical protein SOVF_136520 [Spinacia oleracea])

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-71
Identity = 136/155 (87.74%), Postives = 147/155 (94.84%), Query Frame = 1


Query: 1   MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVEVSKDNWQ+L+++IKSKGMK GVALKPGTPIEEVYP
Sbjct: 1   MVTNPLDYVEPLGKAGASGFTFHVEVSKDNWQELVEKIKSKGMKPGVALKPGTPIEEVYP 60

Query: 61  LVESENPVEMVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 120
           LVE  NPVEMVL+MTVEPGFGGQKFM ETMDKV  LR+KYPSLDIEVDGGLGPSTIDAAA
Sbjct: 61  LVEGHNPVEMVLIMTVEPGFGGQKFMLETMDKVCALRKKYPSLDIEVDGGLGPSTIDAAA 120

Query: 121 SAGANCIVAGSSVFGAPEPSKVISILRKSVEDAQQ 156
           SAGANCIVAGSSVFGAPEP++VI +LRK+VE+AQQ
Sbjct: 121 SAGANCIVAGSSVFGAPEPAQVIKLLRKTVEEAQQ 155

The following BLAST results are available for this feature:

BLAST of Cla006515 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPE1_ORYSJ	6.2e-71	82.17	Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japon...	[more]
RPE_SCHPO	9.0e-38	55.48	Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
RPE_HUMAN	5.8e-37	50.97	Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1	[more]
RPE_MOUSE	1.3e-36	50.32	Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=1 SV=1	[more]
RPE_PONAB	2.2e-36	50.32	Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1	[more]

BLAST of Cla006515 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMZ3_CUCSA	2.5e-79	96.18	Ribulose-phosphate 3-epimerase OS=Cucumis sativus GN=Csa_2G406760 PE=3 SV=1	[more]
A0A067EP20_CITSI	8.6e-72	85.99	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031549mg PE=4 SV=1	[more]
A9PIC8_POPTR	8.6e-72	85.99	Ribulose-phosphate 3-epimerase OS=Populus trichocarpa GN=POPTR_0001s34010g PE=2 ...	[more]
A0A0K9QVL5_SPIOL	8.6e-72	87.74	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136520 PE=4 SV=1	[more]
V4TIU2_9ROSI	1.1e-71	85.99	Ribulose-phosphate 3-epimerase OS=Citrus clementina GN=CICLE_v10016576mg PE=3 SV...	[more]

BLAST of Cla006515 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081475\|ref\|XP_008441351.1\|	1.6e-79	96.18	PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Cucumis melo]	[more]
gi\|449441680\|ref\|XP_004138610.1\|	3.6e-79	96.18	PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Cucumis sativus]	[more]
gi\|695073361\|ref\|XP_009383844.1\|	5.6e-72	87.90	PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Musa acuminata s...	[more]
gi\|641836653\|gb\|KDO55615.1\|	1.2e-71	85.99	hypothetical protein CISIN_1g031549mg [Citrus sinensis]	[more]
gi\|902189144\|gb\|KNA11295.1\|	1.2e-71	87.74	hypothetical protein SOVF_136520 [Spinacia oleracea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000056	Ribul_P_3_epim-like
IPR011060	RibuloseP-bd_barrel
IPR013785	Aldolase_TIM

Vocabulary: **Molecular Function**
Term	Definition
GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process
GO:0008152	metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0015976	carbon utilization
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0008152	metabolic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0019323	pentose catabolic process
biological_process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004750	ribulose-phosphate 3-epimerase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives
molecular_function	GO:0016853	isomerase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU12953	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU14322	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU28526	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006515	Cla006515.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU12953	WMU12953	transcribed_cluster
WMU14322	WMU14322	transcribed_cluster
WMU28526	WMU28526	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000056	Ribulose-phosphate 3-epimerase-like	PANTHER	PTHR11749	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	coord: 1..155 score: 3.1
IPR000056	Ribulose-phosphate 3-epimerase-like	PFAM	PF00834	Ribul_P_3_epim	coord: 1..134 score: 2.8
IPR000056	Ribulose-phosphate 3-epimerase-like	PROSITE	PS01086	RIBUL_P_3_EPIMER_2	coord: 71..93 scor
IPR011060	Ribulose-phosphate binding barrel	unknown	SSF51366	Ribulose-phoshate binding barrel	coord: 1..151 score: 3.06
IPR013785	Aldolase-type TIM barrel	GENE3D	G3DSA:3.20.20.70		coord: 1..156 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006515	Cla97C11G213950	Watermelon (97103) v2	wmwmbB362
Cla006515	Csa2G406760	Cucumber (Chinese Long) v2	cuwmB157
Cla006515	MELO3C008202	Melon (DHL92) v3.5.1	mewmB328
Cla006515	ClCG11G007010	Watermelon (Charleston Gray)	wcgwmB108
Cla006515	CSPI02G25700	Wild cucumber (PI 183967)	cpiwmB161
Cla006515	Cucsa.087660	Cucumber (Gy14) v1	cgywmB102
Cla006515	CmaCh15G000820	Cucurbita maxima (Rimu)	cmawmB283
Cla006515	CmaCh04G029630	Cucurbita maxima (Rimu)	cmawmB729
Cla006515	CmoCh15G000830	Cucurbita moschata (Rifu)	cmowmB274
Cla006515	CmoCh04G030830	Cucurbita moschata (Rifu)	cmowmB725
Cla006515	Lsi03G003860	Bottle gourd (USVL1VR-Ls)	lsiwmB277
Cla006515	Cp4.1LG13g11290	Cucurbita pepo (Zucchini)	cpewmB196
Cla006515	Cp4.1LG01g25700	Cucurbita pepo (Zucchini)	cpewmB457
Cla006515	CsGy2G025330	Cucumber (Gy14) v2	cgybwmB151
Cla006515	MELO3C008202.2	Melon (DHL92) v3.6.1	medwmB325
Cla006515	Carg06038	Silver-seed gourd	carwmB0022
Cla006515	Carg24273	Silver-seed gourd	carwmB1010
Cla006515	CsaV3_2G034200	Cucumber (Chinese Long) v3	cucwmB170
Cla006515	Bhi04G001976	Wax gourd	wgowmB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006515	Cucurbita maxima (Rimu)	cmawmB737
Cla006515	Cucurbita moschata (Rifu)	cmowmB731
Cla006515	Cucurbita pepo (Zucchini)	cpewmB461
Cla006515	Silver-seed gourd	carwmB0024