Cla006004 (gene) Watermelon (97103) v1

Overview
NameCla006004
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 2161867 .. 2162061 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAAGTTAATTTCTCAGTCACTCAACGGGCGCCGGTGCCGCCGTCGGGGCCGGACCCGTGTACGAATATTCCCGGACAAGGGAATGCTCCTTGTGAATTGACCGGCATGAATGTCGCCGGCGCTGCTTTCAGTCAGCCACCTTCTCTGCCGCCGCCACCACCACCACCTTCGTTTTCTTCGTTGTCTTGA

mRNA sequence

ATGGCCGAAGTTAATTTCTCAGTCACTCAACGGGCGCCGGTGCCGCCGTCGGGGCCGGACCCGTGTACGAATATTCCCGGACAAGGGAATGCTCCTTGTGAATTGACCGGCATGAATGTCGCCGGCGCTGCTTTCAGTCAGCCACCTTCTCTGCCGCCGCCACCACCACCACCTTCGTTTTCTTCGTTGTCTTGA

Coding sequence (CDS)

ATGGCCGAAGTTAATTTCTCAGTCACTCAACGGGCGCCGGTGCCGCCGTCGGGGCCGGACCCGTGTACGAATATTCCCGGACAAGGGAATGCTCCTTGTGAATTGACCGGCATGAATGTCGCCGGCGCTGCTTTCAGTCAGCCACCTTCTCTGCCGCCGCCACCACCACCACCTTCGTTTTCTTCGTTGTCTTGA

Protein sequence

MAEVNFSVTQRAPVPPSGPDPCTNIPGQGNAPCELTGMNVAGAAFSQPPSLPPPPPPPSFSSLS
Homology
[Close]
BLAST of Cla006004 vs. TrEMBL
Match: A0A0A0LCX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.8e-07
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 8  VTQRAPVPPSGPDPCTNIPGQGNAPCELTGMNVAGAAF--SQPPSLP 53
          V QRAPVPPSG +PCT IPGQ N  C L  MNVAG  F  ++PP +P
Sbjct: 51 VLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIP 97

[Close]
BLAST of Cla006004 vs. NCBI nr
Match: gi|700202788|gb|KGN57921.1| (hypothetical protein Csa_3G391390 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 8  VTQRAPVPPSGPDPCTNIPGQGNAPCELTGMNVAGAAF--SQPPSLP 53
          V QRAPVPPSG +PCT IPGQ N  C L  MNVAG  F  ++PP +P
Sbjct: 51 VLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIP 97

[Close]
BLAST of Cla006004 vs. NCBI nr
Match: gi|659123868|ref|XP_008461883.1| (PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1 

Query: 8   VTQRAPVPPSGPDPCTNIPGQGNAPCELTGMNVAGAAF--SQPPSLPPPPP 57
           V QRAPVPPSG +PCT IPGQ +  C L  MNVAG  F  ++PP++P   P
Sbjct: 51  VLQRAPVPPSGRNPCTGIPGQSSGRCTLQTMNVAGHHFVHARPPAIPDSGP 101

The following BLAST results are available for this feature:
BLAST of Cla006004 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCX8_CUCSA8.8e-0761.70Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1[more]
BLAST of Cla006004 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202788|gb|KGN57921.1|1.3e-0661.70hypothetical protein Csa_3G391390 [Cucumis sativus][more]
gi|659123868|ref|XP_008461883.1|1.3e-0656.86PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006004Cla006004.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 10..49
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006004ClCG07G000810Watermelon (Charleston Gray)wcgwmB373
Cla006004Bhi05G000177Wax gourdwgowmB265
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006004Melon (DHL92) v3.5.1mewmB410
Cla006004Melon (DHL92) v3.5.1mewmB459
Cla006004Watermelon (Charleston Gray)wcgwmB324
Cla006004Cucumber (Chinese Long) v2cuwmB116
Cla006004Cucumber (Chinese Long) v2cuwmB221
Cla006004Cucurbita pepo (Zucchini)cpewmB257
Cla006004Cucurbita pepo (Zucchini)cpewmB326
Cla006004Cucurbita pepo (Zucchini)cpewmB605
Cla006004Cucurbita pepo (Zucchini)cpewmB700
Cla006004Cucurbita pepo (Zucchini)cpewmB841
Cla006004Bottle gourd (USVL1VR-Ls)lsiwmB013
Cla006004Bottle gourd (USVL1VR-Ls)lsiwmB356
Cla006004Bottle gourd (USVL1VR-Ls)lsiwmB359
Cla006004Cucumber (Gy14) v2cgybwmB114
Cla006004Cucumber (Gy14) v2cgybwmB207
Cla006004Melon (DHL92) v3.6.1medwmB401
Cla006004Melon (DHL92) v3.6.1medwmB444
Cla006004Silver-seed gourdcarwmB0750
Cla006004Silver-seed gourdcarwmB0778
Cla006004Silver-seed gourdcarwmB0960
Cla006004Cucumber (Chinese Long) v3cucwmB130
Cla006004Cucumber (Chinese Long) v3cucwmB227
Cla006004Watermelon (97103) v2wmwmbB161
Cla006004Watermelon (97103) v2wmwmbB165
Cla006004Watermelon (97103) v2wmwmbB175
Cla006004Watermelon (97103) v1wmwmB099
Cla006004Watermelon (97103) v1wmwmB116
Cla006004Cucumber (Gy14) v1cgywmB475
Cla006004Cucurbita maxima (Rimu)cmawmB236
Cla006004Cucurbita maxima (Rimu)cmawmB491
Cla006004Cucurbita maxima (Rimu)cmawmB558
Cla006004Cucurbita maxima (Rimu)cmawmB866
Cla006004Cucurbita moschata (Rifu)cmowmB223
Cla006004Cucurbita moschata (Rifu)cmowmB339
Cla006004Cucurbita moschata (Rifu)cmowmB485
Cla006004Cucurbita moschata (Rifu)cmowmB551
Cla006004Cucurbita moschata (Rifu)cmowmB853