Cla005749 (gene) Watermelon (97103) v1

Overview
NameCla005749
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr11 : 11116845 .. 11117359 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGGTGATAGAGGTAGTCAAATTCATAAAAATGTTGGAGGAGGTCAAAAATATGAAGGACTTAGCCCCTTCATTGGAAATTCTGGCACAAGACTCTAACCATGGCCATAGAGCTGTTGGACTAGGAATTGGAGCAATAGGAAAACCTTTCATTCGTAGAAAATCCACACATGATAATGCTCAAATTAATGCAGACTCGCTTGTTTCAAATATGGAGGGAATGAGTTTGGATAGTCAATATGGACATGGGCAATATGTCTATAGCAATAGTAGTTATGGTTATTCTCATAGTAACTATAATCATTTAGGTGATTATGGTTCCTAGGTTATATTGATGAGTGTAACACATTGAAGGGACCACAACTTCCTTGTGAAAGTGATGAAAACTCAAATTCAAAGGCTCTATATTATCTGTATTCTTTGGAGCATCCTCGTCTAGATGGAACATGGTTTGATCCAAGATATCCTCTTATTGGTATCATCGAGGTTGATGTTGAGACTCATGGATGA

mRNA sequence

ATGGTGGTGGTGATAGAGGTAGTCAAATTCATAAAAATGTTGGAGGAGGTCAAAAATATGAAGGACTTAGCCCCTTCATTGGAAATTCTGGCACAAGACTCTAACCATGGCCATAGAGCTGTTGGACTAGGAATTGGAGCAATAGGAAAACCTTTCATTCGTAGAAAATCCACACATGATAATGCTCAAATTAATGCAGACTCGCTTGTTTCAAATATGGAGGGAATGAGTTATATTGATGAGTGTAACACATTGAAGGGACCACAACTTCCTTGTGAAAGTGATGAAAACTCAAATTCAAAGGCTCTATATTATCTGTATTCTTTGGAGCATCCTCGTCTAGATGGAACATGGTTTGATCCAAGATATCCTCTTATTGGTATCATCGAGGTTGATGTTGAGACTCATGGATGA

Coding sequence (CDS)

ATGGTGGTGGTGATAGAGGTAGTCAAATTCATAAAAATGTTGGAGGAGGTCAAAAATATGAAGGACTTAGCCCCTTCATTGGAAATTCTGGCACAAGACTCTAACCATGGCCATAGAGCTGTTGGACTAGGAATTGGAGCAATAGGAAAACCTTTCATTCGTAGAAAATCCACACATGATAATGCTCAAATTAATGCAGACTCGCTTGTTTCAAATATGGAGGGAATGAGTTATATTGATGAGTGTAACACATTGAAGGGACCACAACTTCCTTGTGAAAGTGATGAAAACTCAAATTCAAAGGCTCTATATTATCTGTATTCTTTGGAGCATCCTCGTCTAGATGGAACATGGTTTGATCCAAGATATCCTCTTATTGGTATCATCGAGGTTGATGTTGAGACTCATGGATGA

Protein sequence

MVVVIEVVKFIKMLEEVKNMKDLAPSLEILAQDSNHGHRAVGLGIGAIGKPFIRRKSTHDNAQINADSLVSNMEGMSYIDECNTLKGPQLPCESDENSNSKALYYLYSLEHPRLDGTWFDPRYPLIGIIEVDVETHG
Homology
[Close]
BLAST of Cla005749 vs. TrEMBL
Match: A0A0A0KZ75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G102310 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 35  NHGHRAVGLGIGAIGKPFIRRKSTHDNAQINADSLVSNMEGMS 78
           +H HRA G  IGAIGKPFI R+S HD+AQI  DS+VS MEG S
Sbjct: 59  DHSHRANGPRIGAIGKPFICRRSVHDDAQIYTDSVVSRMEGKS 101

[Close]
BLAST of Cla005749 vs. NCBI nr
Match: gi|700198524|gb|KGN53682.1| (hypothetical protein Csa_4G102310 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-06
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 35  NHGHRAVGLGIGAIGKPFIRRKSTHDNAQINADSLVSNMEGMS 78
           +H HRA G  IGAIGKPFI R+S HD+AQI  DS+VS MEG S
Sbjct: 59  DHSHRANGPRIGAIGKPFICRRSVHDDAQIYTDSVVSRMEGKS 101

The following BLAST results are available for this feature:
BLAST of Cla005749 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ75_CUCSA4.2e-0667.44Uncharacterized protein OS=Cucumis sativus GN=Csa_4G102310 PE=4 SV=1[more]
BLAST of Cla005749 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198524|gb|KGN53682.1|6.1e-0667.44hypothetical protein Csa_4G102310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005749Cla005749.1mRNA