ClCG11G011040 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G011040
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr11 : 21752581 .. 21753137 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGATCATCATCATCATGATGGTAGTGATGAGGGAGATGGTGGTGGTGATAGAGGTAGTCAAATTCATAAAAATGTTGGAGGAGGTCAAAAATATGAAGGACTTAGCCCCTTCATTGGAAATTCTGGCACAAGACTCTAACCATGGCCATAGAGCTGTTGGACTAGGAATTGGAGCAATAGGAAAACCTTTCATTCGTAGAAAATCCACACATGATAATGCTCAAATTAATGCAGACTCGCTTGTTTCAAATATGGAGGGAATGAGTTTGGATAGTCAATATGGACATGGGCAATATGTCTATAGCAATAGTAGTTATGGTTATTCTCATAGTAACTATAATCATTTAGGTGATTATGGTTCCTAGGTTATATTGATGAGTGTAACACATTGAAGGGACCACAACTTCCTTGTGAAAGTGATGAAAACTCAAATTCAAAGGCTCTATATTATCTGTATTCTTTGGAGCATCCTCGTCTAGATGGAACATGGTTTGATCCAAGATATCCTCTTATTGGTATCATCGAGGTTGATGTTGAGACTCATGGATGA

mRNA sequence

ATGGTGATGATCATCATCATCATGATGGTAGTGATGAGGGAGATGGTGGTGGTGATAGAGGTAGTCAAATTCATAAAAATGTTGGAGGAGGTCAAAAATATGAAGGACTTAGCCCCTTCATTGGAAATTCTGGCACAAGACTCTAACCATGGCCATAGAGCTGTTGGACTAGGAATTGGAGCAATAGGAAAACCTTTCATTCGTAGAAAATCCACACATGATAATGCTCAAATTAATGCAGACTCGCTTGTTTCAAATATGGAGGGAATGAGTTTGGATAGTCAATATGGACATGGGCAATATGTCTATAGCAATAGTAGTTATGGTTATATTGATGAGTGTAACACATTGAAGGGACCACAACTTCCTTGTGAAAGTGATGAAAACTCAAATTCAAAGGCTCTATATTATCTGTATTCTTTGGAGCATCCTCGTCTAGATGGAACATGGTTTGATCCAAGATATCCTCTTATTGGTATCATCGAGGTTGATGTTGAGACTCATGGATGA

Coding sequence (CDS)

ATGGTGATGATCATCATCATCATGATGGTAGTGATGAGGGAGATGGTGGTGGTGATAGAGGTAGTCAAATTCATAAAAATGTTGGAGGAGGTCAAAAATATGAAGGACTTAGCCCCTTCATTGGAAATTCTGGCACAAGACTCTAACCATGGCCATAGAGCTGTTGGACTAGGAATTGGAGCAATAGGAAAACCTTTCATTCGTAGAAAATCCACACATGATAATGCTCAAATTAATGCAGACTCGCTTGTTTCAAATATGGAGGGAATGAGTTTGGATAGTCAATATGGACATGGGCAATATGTCTATAGCAATAGTAGTTATGGTTATATTGATGAGTGTAACACATTGAAGGGACCACAACTTCCTTGTGAAAGTGATGAAAACTCAAATTCAAAGGCTCTATATTATCTGTATTCTTTGGAGCATCCTCGTCTAGATGGAACATGGTTTGATCCAAGATATCCTCTTATTGGTATCATCGAGGTTGATGTTGAGACTCATGGATGA

Protein sequence

MVMIIIIMMVVMREMVVVIEVVKFIKMLEEVKNMKDLAPSLEILAQDSNHGHRAVGLGIGAIGKPFIRRKSTHDNAQINADSLVSNMEGMSLDSQYGHGQYVYSNSSYGYIDECNTLKGPQLPCESDENSNSKALYYLYSLEHPRLDGTWFDPRYPLIGIIEVDVETHG
Homology
[Close]
BLAST of ClCG11G011040 vs. TrEMBL
Match: A0A0A0KZ75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G102310 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 49  NHGHRAVGLGIGAIGKPFIRRKSTHDNAQINADSLVSNMEGMSLDSQYGHGQYVYSNSSY 108
           +H HRA G  IGAIGKPFI R+S HD+AQI  DS+VS MEG SLD QYGH QYVY+NS+Y
Sbjct: 59  DHSHRANGPRIGAIGKPFICRRSVHDDAQIYTDSVVSRMEGKSLDRQYGHEQYVYNNSNY 118

[Close]
BLAST of ClCG11G011040 vs. NCBI nr
Match: gi|700198524|gb|KGN53682.1| (hypothetical protein Csa_4G102310 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 49  NHGHRAVGLGIGAIGKPFIRRKSTHDNAQINADSLVSNMEGMSLDSQYGHGQYVYSNSSY 108
           +H HRA G  IGAIGKPFI R+S HD+AQI  DS+VS MEG SLD QYGH QYVY+NS+Y
Sbjct: 59  DHSHRANGPRIGAIGKPFICRRSVHDDAQIYTDSVVSRMEGKSLDRQYGHEQYVYNNSNY 118

The following BLAST results are available for this feature:
BLAST of ClCG11G011040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ75_CUCSA1.0e-1470.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G102310 PE=4 SV=1[more]
BLAST of ClCG11G011040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198524|gb|KGN53682.1|1.5e-1470.00hypothetical protein Csa_4G102310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G011040.1ClCG11G011040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G011040Cla005749Watermelon (97103) v1wcgwmB103
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G011040Watermelon (97103) v2wcgwmbB064
ClCG11G011040Wax gourdwcgwgoB142
ClCG11G011040Cucumber (Gy14) v1cgywcgB319
ClCG11G011040Cucurbita maxima (Rimu)cmawcgB148
ClCG11G011040Cucurbita maxima (Rimu)cmawcgB690
ClCG11G011040Cucurbita moschata (Rifu)cmowcgB135
ClCG11G011040Cucurbita moschata (Rifu)cmowcgB696
ClCG11G011040Wild cucumber (PI 183967)cpiwcgB110
ClCG11G011040Cucumber (Chinese Long) v2cuwcgB103
ClCG11G011040Melon (DHL92) v3.5.1mewcgB367
ClCG11G011040Cucurbita pepo (Zucchini)cpewcgB098
ClCG11G011040Cucurbita pepo (Zucchini)cpewcgB723
ClCG11G011040Bottle gourd (USVL1VR-Ls)lsiwcgB083
ClCG11G011040Cucumber (Gy14) v2cgybwcgB102
ClCG11G011040Melon (DHL92) v3.6.1medwcgB362
ClCG11G011040Silver-seed gourdcarwcgB0006
ClCG11G011040Silver-seed gourdcarwcgB0158
ClCG11G011040Cucumber (Chinese Long) v3cucwcgB119