Cla005129 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005129
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Sister-chromatide cohesion protein 3 (AHRD V1 *--- D7LHE4_ARALL); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site
Location	Chr3 : 28886640 .. 28892976 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTGGGAGATGGAAGCTGGTACCGAGCCTTTGGATCCTATCATTGAAGATGGGGAATATGGATCCAAACCATCCATCGTCAGTTACTATAATGATGATCTGGTTATGTCGACGTCGACGGTCAACAAAGCAATCAAGGGTAATCTAGTCGAGCTGTTTGCAGGAGAAGAGGAGACTCAAGCTACTAAAGGTTTGCTTCATCCTCCTTCAACGGCGAGTGAATTGGATTGTCCAATTGGGTCAAAGATTCCTAGCATAGTAGCTCAAGAGAAAGAGCTAGAGTTAGTAGGAGGAGTTTCAGAACTGGTTTTGGGGAACAAGTCTGAGTTTGGGGATAAAAAGGTGCCAATTTTCGACAGGGGTATCCTCTCAGGTCCTGGCAACGGGTCTTCTTCATACTCGTAACTGGTGGTAAGCACGGTCGGTACTTCTAGCCAGGTAAGTCCTCTTTCTTTGGTTTCTTATCCTTCATGTTGTGGGTGACAGGATAGGGGCAGTAGGCATGCTCCTTTCCAATGGAGGTGTTGTTAGTGATCCTTTTTCTAATCCCAATGCTCTTGGTATTCAGGTTGTACTGTCCATCGGGGGCAAGGATGCTATGGGATGGGCTACTCTAGCCTCAGTGCGAATCCAACTGGTGGAGGCTAAGGGAGGCGAAGTCGGTGGGTTCTTCGAAAAATGTGGTTGCAGATAAGAGAAAACAGAGGGAGCGAAGTAATAAATTGGCTAGGGAGTTGAAAAAGCTTGATAATTCAGTCAATTATGGGAGCAAGAAAGCCTTGAGAAGGCGGGGTCATCTACATCTCAATGTTGAAAATCGTTTCCTAGAATGTTAGGGGGTTGGATGGGCAAGTTAAAAGAAGGTTAGTAAAGGAGGTGCTTGTGCAAGAAAGTCTGGATATTGTCATTCTTATGGAAACTAAACGAAGCTCGTTTTGTGGGAGGAGAATTGCTAGCATTTGGAGAAGTATAAGGGTGGAGTGGGAGGTCCTTGATTCGATTTGGTCCTCAGGGGGTGTCTTAGTTATCTGGAATACTAGGTCTTGTCTTGCTAGGGAGGTTGTCAGAGGCCGTTTCTCCCTTTCAATCTCGTTCCCACGGACCAAAGGAGGGTCGCTGCCGTGAAGGGAAGCTTTTTGGGAGGAGTCGGAGGATCTTTTTGGTTATTGTGGTTCTAGATGGTGTGTGATTGGGACTTTAACATTCTTCGCTCTCTTGAGGAGAAGGCATCTGGTGGAAGGATTGCTAGCTCCATGAGAGCGTTTAATATGTTTATTGATGATAGCAGGTTGTTTGACCCTGAGTATACTTGAGCTAACTACAGAGCTGCAACTAGGATTGATAGGTTTGGTAGTCCTAGGCAGACGAGGGGGCCAAGAGTGACGTCGGATCATTGGCCCATCATCTTAGTATCGGGATCCTAAAGCTGGGGTTCGAGTCCTTTCCGTTTTGAGAATATGTGGCTTGAGCACCCGTTTTCAAGCTAACATTTCTTCTTGGTGGAACACTTGGGTTCAAGGGGAGTGGGAAGGTTATCATTTTATGGGGAAGCTGAGGGCCCTTAAAGGAAATGTTAGAGTTCGGAGTAGAGAAGTCTTTGGAGACGTCAAGACTAGAAAGAAAGAGATCCTTGCTAGAATGGAGGAAATCGATGCTTTGGAGCTGGAAGCCAAGAGGGATGGTTTAAAAGGGATTTTTGTAGACTTGATCAGGAAAGAGAGTATTAGTTGGCTGCACGTGTGGCTCACATACGACTCTTGCCAGACTCTGGGGTTCTTTAAATTGAAAGATGGGCTTCCTCTTGAGTCCGGTGGTGACATAAAAAGACAAGAAAAATCTTACCAAACTTGAGAGGGTAGCAGAAACCAGTGGAGGTGGGTTTAGGTGCAGATGGACATGAAACTCATAAAACTTGAGGTGAGAAACAAGAGGGATCCAAACCCCAAAGTTCACAAACCCTAACTGCCCCAAGCAAAAGAACCAGAACTCTGATATCATGCACTCAGTGTCGGAAAAAAACTCAATTGTATTTTAGATTCGAGTCACATATGTATAGGTGTACATAAATTAAGAATTGAATCATTACAATAAAGGACAGCTAGACATGATAGTGGATATTATAACAACACCATGTATGCTTATATATGTTGAATTCTAATGTATAGAATCAGTGAGGAGTTCTCTCGTATTGCCGTGTAACATTATTAGGTTCAGTTATTTTTTTCAGAGAGATTTTTATTATTCTATATGAAAAAGACATGGTACTATTTAAATATAATGCCGGAGAAATTTAAACTAAGGGAATTAATTATAAAATGAAAGGATATAAAATAAAATTTAAGAAATAAAATGACTAATATTTAAATTCAATGGTATACACAAATCTATAGGTTCTATTTTTTTTGCCACCGTTACTTTTATACATCAGTCAAAAGTTTCCTTTGCATCTTTTATATACAATTTCCTGTGCTAAGGACACCAAATGGTGAGCCTCAATGTGAAGAAACCCTTCTAATTTTATCACGTTTCTCGTGAGATTTTTTTTCTTTTTTTCCCTGTAAGATCTGAGATTACTGAGTTTGTGAAGAATCATGCCGTGTGATTTCACATCCTTTTCTTTTTGGGGTTGTGCTAGGCCTACCATCGACAGACAGTGGAACTCTTGAGAAATAGTGATGGGCCTTCAACAGGCAAATCCTTTCTAGAATGTAGGGAGTTGGCTGCTCGGCTTTCTGGAACATTTGTAGGTGCAGCTAGGAACAAGCATAGATTAGATATTTTAAAGATCGTTAAGGATGGAGTTGAGCATGCCTTCTCTGATGCACCGAAGAATTTATCTTTCCTGGAATGTGCCGTTCTACATTTTGTTTCCAAATTGCCTACACCTGATATCCTGGAAATGTAAGATGCTTATACCATTTTAACATCAGGTTGAGTTAAAACTAGTATTTGCTTGCAATTTAATTCGTAATCACTTTTCAAACAGTATCAAGGATGTCCAGAATCGAACAGAAAATATTAATACAGATGAAGACCCAAGTGGCTGGCGCCCGTATCATATGTTTGTTGACAGCTTGCGTGAAAAGTATGCTAAAAATGATGGTTTGCAAGGTAACTTGCTCCTCTCAATTTAAGTTGTCTTTAGAGGAAAATTCAATCTCTCTTGGTTGAATGTGCATGATTCTTGATTGGATTCAGATGCATCTTGAGGATATTGTGGATTTTTTCACTTCCTTTGCATTATTGGATTTACGTTATTTAGTTCTGCATTTTTTATTTTTCTTTGGCTAGAGAGAACCAAGGCCACGTTTAATAACCATGTTGGTTTTTGTTTTACAAATTAAAAATCATTTATGTCTACAACTGTTTTTTGTTTCCTATTTTTAAATACAGAAAATTAAATGAAACCAAACATTTTATCCCAAAAAAAAAAAAAGTACATAACAAAACATAAAACATGTTTGGTTTTTATCAAGAAATGTGTTAGAGCGAGAAATATGTAGTTGGCCCATCACCTACGAAGCGTAGGATCAGAACTTAGCTCATATACCATGTTAAATCACCAATCAATCATAAATAGGGGTATTCAAATAACCCGATGATTCGAAAAAACCTGATCAGCCTGTTTGGGTTAGGTTATCAACTCATTTGGGTTAGGCTGGGTTCAAATAAATGAAAATGTTACGAGTTGAGTTGGTTCATGGGTTCACCTAAAATAACCCAAACCAAACCAAACCACCCCAAACCTATTATTAACTCTAAAATGTATATTTTTTTACTTAATTATAATAAAATTATAGATACATATATTTCTTTTAGTTTTTTTTTTTTTCCTTTTTTGGATAATTTTTTCTCCAACAAATCCTAGAAACAATTTTTAAATACTTTGGAAAGAAAAATTTCATAATATAAATTGAAACTGAGTTATTAATTCTAATTCAATATATGAAAATAACTAAATAAATTTTTTGCATATTAACATTTTACTTTTTTTTAGAACAAAAATTTAAATAAATGACCCGGATAACTTGAACCAACCCAACCCAAATGTTTTACAACCATGAAACATTTGGGTTGGGTTCATTTTTTAATGAGGGTTATTTGGATTGGGTTTAAAAGTCTGCAACCCAACCCAGCCTAACCCACGAACCACCCCTAACCATAAGCTTAAGTTGATAGGTTATGATAAATTTAGTTATATTGATACTCAACAGTATGGAAATAAAAATCTGGAGATAGAGGTAAACTTTTTAGAGAGATAAAAGTAAATTCTAGACTGAATAGAAATTAGAGAAATGTTAGAGGGAATACTAGTTAGAGTCCTTAAAAGAAGAATATTAGTTAGAAAAAAAGAGTCAGAGAGAAAGATAAATGGGAGAGAGAGAGAGAGAAGACTTCAGGGGAGAATGCTAGAGAGAAGCATGTTAGAAGAGAGAAATTTTATATATTAGAGAGTTAAGAGAAATATAAGTTAAGAGAAGAATTAAAATTCTTGAGAAGAGAGAGAGATGTTAGAAGAGAGATAAATTAAAACTTTAGGGAAGTTACTGTATTCGGTCAGTTTAAGTTGCTATTTTTGTGGAGTTAGTGCAGTAAATTGATTTTTGTGGAGTTAGTGCAGTAAATTTTTGTGGAGTTAGTGCAGTAAATTGATTTTTGTGGAGTTAGCTAAGCTATCTTTAGAATTAGATCTATATTTATTTTAGGTAGTGATTGAATGAAAATGTACTTTCCCATTTCTCATTAAGAACTTCGTGGTATTAAAGCACTAAATTCTTAAGTTGTTTGGTAGAATGGAACGGGAGATGAAAATGGGTCTAATGTTTAAATGAAGCTGATTTCTATATGAAGTATGGTAAACAGAATGAATCATATTATATTTTCTTTTTGTTGTGATTTCAAAATCGTTTTGGTGATGGCAATAGTAGAAATTTTATTTTGGTTCTACCAGTTCTAATTCTGGTTCATTCCCGTTTCTATTAAATAAATGAAGCCTGAGAGTCTATGCTGCATATGTTCCAATGGCTTCTTCACAGACTAAGCTGTCGCTATATCTGTAAATGTAATCTTTTTTTTAATTTCAACTTATAATTTATTTAATGTTCAAGTGCACTCACCGATCCATATATTTATATTTATTATTGCTATAGTATCCTTCTTTGTAATTTGAACATAGTCTCAATTCATTATATCATGAAAAATACATTTCCTTTTAAAAAAAAATTATTTAATTTTCTTTGTTGTGTAATTGTAGATGAGAAAGAAGAAAATTCTACTAGACGTAGGGGTCGGCCCCCCAAAAAACATACCATACAGGGAGAGAGACTTTTTGATGAGCAAAGTGCAAGTGAAGACGAGGAATCAATTAGTGCATCTGACCATGAAGATGTACATGATGAAGAGAAGCAAGATGAGGAAGATGAGGAAGAAGTACCACTCATCCATTCAATTAGGCCATCCTCTAAATTGAGATCACTTAGAATTTCAAGAGATGAAAAAAAAGGGAGTTCTACAGGAAAAGCTGCAGGTAATATGTCTGCTTCCCGAATGAAAGTTTTTAGTATTAATGAAGTAGATCTTTTAAATAACTCAGATAGCTTTTAGTAAGCTGCTTAAACATACCCAGCTTGAGGCATTTGCTCGGGCAAGCCTCATGGTTGATTTATTATATTGTTCAGAAACTACCCGCTTCTTCATACAAACTTTGTCTTCACTGCACCTGATACAAATATTGGAAGTAACAATCATTTACATATATTATTATGGGCAAGGATTTTGTGCAACGTAGGTTGCATCTAATTCTATGCATCCCTTTCTTTTACCAAAAAAAAACTCAAAAACAAGTCATATATATATGTTTGCTACATTGCAATTTTCTATTGGTCAACTATCTGCACTGCACAAAGATCAACCCCCAAGTTTATTTCTTTTGTTATAGCATGAATCCATGCAACAATATTCTTACTTGCTGTGTACAGTCTTGTATGGCAGAAAGGATCAAAAAAGTTGTTTCAGATGAAAAGGATATTTGTTTTTCCTTACATAAGATTTGTGGTCAGATGAAGCTATCTTGGTTCATGTGGTGCTTGGTTGAAGTTGTACTTCTGCCATTTTTGCTCCATGTTATGAATGAATAGTGTTATTTTGAAAATGAATAATTCATTTCTGGTCGATCCTTTTCCTGCAAAAGATACTATCAACACTACTACTGATAGTTAATCACACCTACTAGCTGCATATATCTGTAGCAGGTCAATTTCTCTTGTCTTATTGATCCTGTGTTAATCTGCTCGTGATTAATCATTTTCTTTCTGCAGGGCCACCGCCTACATGA

mRNA sequence

ATGCGGTGGGAGATGGAAGCTGGTACCGAGCCTTTGGATCCTATCATTGAAGATGGGGAATATGGATCCAAACCATCCATCGTCAGTTACTATAATGATGATCTGGTTATGTCGACGTCGACGGTCAACAAAGCAATCAAGGGTAATCTAGTCGAGCTGTTTGCAGGAGAAGAGGAGACTCAAGCTACTAAAGGTTTGCTTCATCCTCCTTCAACGGCGAGTGAATTGGATTGTCCAATTGGGTCAAAGATTCCTAGCATAGTAGCTCAAGAGAAAGAGCTAGAGTTAGTAGGAGGAGTTTCAGAACTGGTTTTGGGGAACAAGTCTGAGTTTGGGGATAAAAAGGTGCCAATTTTCGACAGGGGTATCCTCTCAGGTCCTGGCAACGGGTCTTCTTCATACTCTATCAAGGATGTCCAGAATCGAACAGAAAATATTAATACAGATGAAGACCCAAGTGGCTGGCGCCCGTATCATATGTTTGTTGACAGCTTGCGTGAAAAGTATGCTAAAAATGATGGTTTGCAAGATGAGAAAGAAGAAAATTCTACTAGACGTAGGGGTCGGCCCCCCAAAAAACATACCATACAGGGAGAGAGACTTTTTGATGAGCAAAGTGCAAGTGAAGACGAGGAATCAATTAGTGCATCTGACCATGAAGATGTACATGATGAAGAGAAGCAAGATGAGGAAGATGAGGAAGAAGTACCACTCATCCATTCAATTAGGCCATCCTCTAAATTGAGATCACTTAGAATTTCAAGAGATGAAAAAAAAGGGAGTTCTACAGGAAAAGCTGCAGGGCCACCGCCTACATGA

Coding sequence (CDS)

ATGCGGTGGGAGATGGAAGCTGGTACCGAGCCTTTGGATCCTATCATTGAAGATGGGGAATATGGATCCAAACCATCCATCGTCAGTTACTATAATGATGATCTGGTTATGTCGACGTCGACGGTCAACAAAGCAATCAAGGGTAATCTAGTCGAGCTGTTTGCAGGAGAAGAGGAGACTCAAGCTACTAAAGGTTTGCTTCATCCTCCTTCAACGGCGAGTGAATTGGATTGTCCAATTGGGTCAAAGATTCCTAGCATAGTAGCTCAAGAGAAAGAGCTAGAGTTAGTAGGAGGAGTTTCAGAACTGGTTTTGGGGAACAAGTCTGAGTTTGGGGATAAAAAGGTGCCAATTTTCGACAGGGGTATCCTCTCAGGTCCTGGCAACGGGTCTTCTTCATACTCTATCAAGGATGTCCAGAATCGAACAGAAAATATTAATACAGATGAAGACCCAAGTGGCTGGCGCCCGTATCATATGTTTGTTGACAGCTTGCGTGAAAAGTATGCTAAAAATGATGGTTTGCAAGATGAGAAAGAAGAAAATTCTACTAGACGTAGGGGTCGGCCCCCCAAAAAACATACCATACAGGGAGAGAGACTTTTTGATGAGCAAAGTGCAAGTGAAGACGAGGAATCAATTAGTGCATCTGACCATGAAGATGTACATGATGAAGAGAAGCAAGATGAGGAAGATGAGGAAGAAGTACCACTCATCCATTCAATTAGGCCATCCTCTAAATTGAGATCACTTAGAATTTCAAGAGATGAAAAAAAAGGGAGTTCTACAGGAAAAGCTGCAGGGCCACCGCCTACATGA

Protein sequence

MRWEMEAGTEPLDPIIEDGEYGSKPSIVSYYNDDLVMSTSTVNKAIKGNLVELFAGEEETQATKGLLHPPSTASELDCPIGSKIPSIVAQEKELELVGGVSELVLGNKSEFGDKKVPIFDRGILSGPGNGSSSYSIKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHTIQGERLFDEQSASEDEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRPSSKLRSLRISRDEKKGSSTGKAAGPPPT

Homology

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BLAST of Cla005129 vs. Swiss-Prot
Match: SCC3_ARATH (Sister-chromatid cohesion protein 3 OS=Arabidopsis thaliana GN=SCC3 PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 9.8e-24
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1


Query: 137  KDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHTI 196
            KDVQ R  ++NTDEDPSGWRP   F+++L EK  KN+ LQD+KE  + RRRGRP K+   
Sbjct: 984  KDVQGRIVHVNTDEDPSGWRPCFTFLETLEEKCLKNEDLQDDKEAANVRRRGRPRKRPET 1043

Query: 197  QGERLFDEQSASEDEESIS-ASDHEDVHDEEKQDEEDEEEVPLIHSIRPSSKLRSLRISR 256
            + +RLFDEQS S+++ESIS  SD ED  D         E+ PLI +IR +++ ++L+  R
Sbjct: 1044 ERKRLFDEQSGSDEDESISGGSDREDKLD---------EDAPLIETIRSAARRKALKGER 1096

Query: 257  DE 258
             +
Sbjct: 1104 SK 1096

[Close]

BLAST of Cla005129 vs. TrEMBL
Match: A0A0A0M1E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560785 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 9.7e-63
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 1


Query: 136 IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
           IKDVQNRT NINTDEDPSGWRPYH FVDSLREKYAK+DGLQDEKE NSTRRRGRP KKH 
Sbjct: 154 IKDVQNRTGNINTDEDPSGWRPYHTFVDSLREKYAKSDGLQDEKEGNSTRRRGRPRKKHN 213

Query: 196 IQGERLFDEQSASEDEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRPSSKLRSLRISR 255
           +QG+RLFDEQS SE+EESISASDHEDVHDEEKQDEEDEEEVPLIHSIR SSKLRSLRISR
Sbjct: 214 LQGKRLFDEQSTSEEEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRSSSKLRSLRISR 273

Query: 256 DEKKGSSTGKAAGPPPT 273
           +EKKG+STGKAAG P T
Sbjct: 274 EEKKGTSTGKAAGLPST 290

[Close]

BLAST of Cla005129 vs. TrEMBL
Match: U5FTL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s14940g PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.8e-46
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 1


Query: 136  IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
            +KDVQ+RTEN+NTDEDPSGWRPYH FVDSLREKY KN+GL DEKE    RR GRP K+  
Sbjct: 881  LKDVQSRTENVNTDEDPSGWRPYHTFVDSLREKYVKNEGLPDEKER---RRSGRPRKRRN 940

Query: 196  IQGERLFDEQSASEDEESISASDHEDVHD-EEKQDEEDEEEVPLIHSIRPSSKLRSLRIS 255
            I+G+RLFDE+S+SE+E+SIS SD ED HD EEKQ+EE+EEE PLIHSIR SSKLRSL++S
Sbjct: 941  IEGKRLFDEESSSEEEDSISGSDREDAHDEEEKQEEEEEEEAPLIHSIRSSSKLRSLKLS 1000

Query: 256  RDEKKGSSTGKAA 268
            RDE KG   G +A
Sbjct: 1001 RDENKGQRKGVSA 1010

[Close]

BLAST of Cla005129 vs. TrEMBL
Match: A0A067JCH3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22012 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 93/133 (69.92%), Postives = 112/133 (84.21%), Query Frame = 1


Query: 136  IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
            +KDVQ+RTEN+NTDEDPSGWRPYH FVD+LREKYAKNDG  DEKE  + RRRGRP K+  
Sbjct: 984  LKDVQSRTENVNTDEDPSGWRPYHTFVDNLREKYAKNDGFPDEKEGTTVRRRGRPRKRQN 1043

Query: 196  IQGERLFDEQSASEDEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRPSSKLRSLRISR 255
            I+G+RLFDE S+SE+E+SIS SD +DV +EEKQDEE+EEE PLIHS R SSKLRSL++SR
Sbjct: 1044 IEGKRLFDEHSSSEEEDSISGSD-QDVQEEEKQDEEEEEEAPLIHSFRSSSKLRSLKVSR 1103

Query: 256  DEKKG-SSTGKAA 268
            DE +  + TG +A
Sbjct: 1104 DENRSRAKTGVSA 1115

[Close]

BLAST of Cla005129 vs. TrEMBL
Match: B9GU75_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s23150g PE=4 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 9.1e-45
Identity = 92/126 (73.02%), Postives = 107/126 (84.92%), Query Frame = 1


Query: 136  IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
            +KDVQ+RTENINTDEDPSGWRPYH FVDSLREKY KN+GL DEKE    +R GRP K+  
Sbjct: 905  LKDVQSRTENINTDEDPSGWRPYHTFVDSLREKYVKNEGLPDEKER---KRGGRPRKRRN 964

Query: 196  IQGERLFDEQSASEDEESISASDHEDVHD-EEKQDEEDEEEVPLIHSIRPSSKLRSLRIS 255
            I+G+RLFDE S+SE+E+SIS SD ED HD EEKQDEE+E+E PLIHS+R SSKLRSL++S
Sbjct: 965  IEGKRLFDEDSSSEEEDSISGSDREDAHDEEEKQDEEEEDEAPLIHSLRSSSKLRSLKLS 1024

Query: 256  RDEKKG 261
            RDE KG
Sbjct: 1025 RDENKG 1027

[Close]

BLAST of Cla005129 vs. TrEMBL
Match: B9GUB7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s23150g PE=4 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 9.1e-45
Identity = 92/126 (73.02%), Postives = 107/126 (84.92%), Query Frame = 1


Query: 136  IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
            +KDVQ+RTENINTDEDPSGWRPYH FVDSLREKY KN+GL DEKE    +R GRP K+  
Sbjct: 979  LKDVQSRTENINTDEDPSGWRPYHTFVDSLREKYVKNEGLPDEKER---KRGGRPRKRRN 1038

Query: 196  IQGERLFDEQSASEDEESISASDHEDVHD-EEKQDEEDEEEVPLIHSIRPSSKLRSLRIS 255
            I+G+RLFDE S+SE+E+SIS SD ED HD EEKQDEE+E+E PLIHS+R SSKLRSL++S
Sbjct: 1039 IEGKRLFDEDSSSEEEDSISGSDREDAHDEEEKQDEEEEDEAPLIHSLRSSSKLRSLKLS 1098

Query: 256  RDEKKG 261
            RDE KG
Sbjct: 1099 RDENKG 1101

[Close]

BLAST of Cla005129 vs. NCBI nr
Match: gi|778662200|ref|XP_011659512.1| (PREDICTED: sister-chromatid cohesion protein 3 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 1


Query: 136  IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
            IKDVQNRT NINTDEDPSGWRPYH FVDSLREKYAK+DGLQDEKE NSTRRRGRP KKH 
Sbjct: 1005 IKDVQNRTGNINTDEDPSGWRPYHTFVDSLREKYAKSDGLQDEKEGNSTRRRGRPRKKHN 1064

Query: 196  IQGERLFDEQSASEDEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRPSSKLRSLRISR 255
            +QG+RLFDEQS SE+EESISASDHEDVHDEEKQDEEDEEEVPLIHSIR SSKLRSLRISR
Sbjct: 1065 LQGKRLFDEQSTSEEEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRSSSKLRSLRISR 1124

Query: 256  DEKKGSSTGKAAGPPPT 273
            +EKKG+STGKAAG P T
Sbjct: 1125 EEKKGTSTGKAAGLPST 1141

[Close]

BLAST of Cla005129 vs. NCBI nr
Match: gi|700210900|gb|KGN65996.1| (hypothetical protein Csa_1G560785 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 1


Query: 136 IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
           IKDVQNRT NINTDEDPSGWRPYH FVDSLREKYAK+DGLQDEKE NSTRRRGRP KKH 
Sbjct: 154 IKDVQNRTGNINTDEDPSGWRPYHTFVDSLREKYAKSDGLQDEKEGNSTRRRGRPRKKHN 213

Query: 196 IQGERLFDEQSASEDEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRPSSKLRSLRISR 255
           +QG+RLFDEQS SE+EESISASDHEDVHDEEKQDEEDEEEVPLIHSIR SSKLRSLRISR
Sbjct: 214 LQGKRLFDEQSTSEEEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRSSSKLRSLRISR 273

Query: 256 DEKKGSSTGKAAGPPPT 273
           +EKKG+STGKAAG P T
Sbjct: 274 EEKKGTSTGKAAGLPST 290

[Close]

BLAST of Cla005129 vs. NCBI nr
Match: gi|659099245|ref|XP_008450503.1| (PREDICTED: sister-chromatid cohesion protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 5.3e-62
Identity = 123/137 (89.78%), Postives = 128/137 (93.43%), Query Frame = 1


Query: 136  IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
            IKDVQNRT NINTDEDPSGWRPYH FVDSLREKYAK+DGLQDEKE NSTRRRGRP KKH 
Sbjct: 1003 IKDVQNRTGNINTDEDPSGWRPYHTFVDSLREKYAKSDGLQDEKEGNSTRRRGRPRKKHN 1062

Query: 196  IQGERLFDEQSASEDEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRPSSKLRSLRISR 255
            IQG+RLFDEQS SE+EESISASDHEDVHDEEKQDEED EEVPLIHSIR SSKLRSLRISR
Sbjct: 1063 IQGKRLFDEQSTSEEEESISASDHEDVHDEEKQDEED-EEVPLIHSIRSSSKLRSLRISR 1122

Query: 256  DEKKGSSTGKAAGPPPT 273
            +EKKG+STGKAAGPP T
Sbjct: 1123 EEKKGTSTGKAAGPPST 1138

[Close]

BLAST of Cla005129 vs. NCBI nr
Match: gi|566204355|ref|XP_006375519.1| (hypothetical protein POPTR_0014s14940g [Populus trichocarpa])

HSP 1 Score: 193.7 bits (491), Expect = 4.1e-46
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 1


Query: 136  IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
            +KDVQ+RTEN+NTDEDPSGWRPYH FVDSLREKY KN+GL DEKE    RR GRP K+  
Sbjct: 881  LKDVQSRTENVNTDEDPSGWRPYHTFVDSLREKYVKNEGLPDEKER---RRSGRPRKRRN 940

Query: 196  IQGERLFDEQSASEDEESISASDHEDVHD-EEKQDEEDEEEVPLIHSIRPSSKLRSLRIS 255
            I+G+RLFDE+S+SE+E+SIS SD ED HD EEKQ+EE+EEE PLIHSIR SSKLRSL++S
Sbjct: 941  IEGKRLFDEESSSEEEDSISGSDREDAHDEEEKQEEEEEEEAPLIHSIRSSSKLRSLKLS 1000

Query: 256  RDEKKGSSTGKAA 268
            RDE KG   G +A
Sbjct: 1001 RDENKGQRKGVSA 1010

[Close]

BLAST of Cla005129 vs. NCBI nr
Match: gi|802794865|ref|XP_012092345.1| (PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas])

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 93/133 (69.92%), Postives = 112/133 (84.21%), Query Frame = 1


Query: 136  IKDVQNRTENINTDEDPSGWRPYHMFVDSLREKYAKNDGLQDEKEENSTRRRGRPPKKHT 195
            +KDVQ+RTEN+NTDEDPSGWRPYH FVD+LREKYAKNDG  DEKE  + RRRGRP K+  
Sbjct: 984  LKDVQSRTENVNTDEDPSGWRPYHTFVDNLREKYAKNDGFPDEKEGTTVRRRGRPRKRQN 1043

Query: 196  IQGERLFDEQSASEDEESISASDHEDVHDEEKQDEEDEEEVPLIHSIRPSSKLRSLRISR 255
            I+G+RLFDE S+SE+E+SIS SD +DV +EEKQDEE+EEE PLIHS R SSKLRSL++SR
Sbjct: 1044 IEGKRLFDEHSSSEEEDSISGSD-QDVQEEEKQDEEEEEEAPLIHSFRSSSKLRSLKVSR 1103

Query: 256  DEKKG-SSTGKAA 268
            DE +  + TG +A
Sbjct: 1104 DENRSRAKTGVSA 1115

The following BLAST results are available for this feature:

BLAST of Cla005129 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SCC3_ARATH	9.8e-24	48.36	Sister-chromatid cohesion protein 3 OS=Arabidopsis thaliana GN=SCC3 PE=1 SV=2	[more]

BLAST of Cla005129 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1E7_CUCSA	9.7e-63	89.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560785 PE=4 SV=1	[more]
U5FTL5_POPTR	2.8e-46	71.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s14940g PE=4 SV=1	[more]
A0A067JCH3_JATCU	1.1e-45	69.92	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22012 PE=4 SV=1	[more]
B9GU75_POPTR	9.1e-45	73.02	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s23150g PE=4 SV=2	[more]
B9GUB7_POPTR	9.1e-45	73.02	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s23150g PE=4 SV=2	[more]

BLAST of Cla005129 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662200\|ref\|XP_011659512.1\|	1.4e-62	89.05	PREDICTED: sister-chromatid cohesion protein 3 [Cucumis sativus]	[more]
gi\|700210900\|gb\|KGN65996.1\|	1.4e-62	89.05	hypothetical protein Csa_1G560785 [Cucumis sativus]	[more]
gi\|659099245\|ref\|XP_008450503.1\|	5.3e-62	89.78	PREDICTED: sister-chromatid cohesion protein 3 isoform X1 [Cucumis melo]	[more]
gi\|566204355\|ref\|XP_006375519.1\|	4.1e-46	71.43	hypothetical protein POPTR_0014s14940g [Populus trichocarpa]	[more]
gi\|802794865\|ref\|XP_012092345.1\|	1.6e-45	69.92	PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009887	animal organ morphogenesis
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0008150	biological_process
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0007129	synapsis
biological_process	GO:0006396	RNA processing
biological_process	GO:0033044	regulation of chromosome organization
biological_process	GO:0051455	attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0010638	positive regulation of organelle organization
biological_process	GO:0007067	mitotic nuclear division
biological_process	GO:0051754	meiotic sister chromatid cohesion, centromeric
biological_process	GO:0009630	gravitropism
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0005694	chromosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005488	binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU32853	watermelon EST collection version 2.0	transcribed_cluster
WMU42820	watermelon EST collection version 2.0	transcribed_cluster
WMU70715	watermelon EST collection version 2.0	transcribed_cluster
WMU72586	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005129	Cla005129.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU32853	WMU32853	transcribed_cluster
WMU72586	WMU72586	transcribed_cluster
WMU70715	WMU70715	transcribed_cluster
WMU42820	WMU42820	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11199	STROMAL ANTIGEN	coord: 136..261 score: 5.6
None	No IPR available	PANTHER	PTHR11199:SF0	LD34181P-RELATED	coord: 136..261 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005129	Cla97C03G068440	Watermelon (97103) v2	wmwmbB125
Cla005129	MELO3C015234	Melon (DHL92) v3.5.1	mewmB265
Cla005129	ClCG03G018060	Watermelon (Charleston Gray)	wcgwmB224
Cla005129	CSPI01G25720	Wild cucumber (PI 183967)	cpiwmB025
Cla005129	CmaCh11G011770	Cucurbita maxima (Rimu)	cmawmB101
Cla005129	CmoCh11G012650	Cucurbita moschata (Rifu)	cmowmB090
Cla005129	Lsi06G000050	Bottle gourd (USVL1VR-Ls)	lsiwmB396
Cla005129	Cp4.1LG04g00150	Cucurbita pepo (Zucchini)	cpewmB647
Cla005129	CsGy1G025040	Cucumber (Gy14) v2	cgybwmB026
Cla005129	CsaV3_1G038120	Cucumber (Chinese Long) v3	cucwmB028
Cla005129	Bhi02G001851	Wax gourd	wgowmB654

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005129	Cucurbita maxima (Rimu)	cmawmB097
Cla005129	Melon (DHL92) v3.6.1	medwmB256