Cla004892 (gene) Watermelon (97103) v1

NameCla004892
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 188101 .. 188958 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGAGCACTCTACCGTCTCCCACGACGGTGCTCGACGGCCCAGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGCCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTGAGCCCAAGTATTTCCAACTTTTTTTTTAAAATTTATTTTATATTTATCTTATTATTTATTAATTTTTTTAACATCTTTACATAAATATGTCACTTAAATGCTATTATATTTGTTTTAACTTAAATGCTATTATATTTGTTTTTAACTCCACTAACCAAATTTATTTATCCACTTACACATAACTCAATTGGTATCAATTAAACATCTCTTATCCTATTTGTTTGTTGAACTAAATAATAATAATATATAAAATGAAATTTATTTACCAAGTTATTAGATATCTCTGCATATGCCTAAATATATTAATAAAGTAATAATTCAAATGACACAACTATCTATAAAATGACTTAATTGAAAATCTCTAATACTTTACAGGTAGAATTCATATTTTAA

mRNA sequence

ATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGAGCACTCTACCGTCTCCCACGACGGTGCTCGACGGCCCAGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGCCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTAGAATTCATATTTTAA

Coding sequence (CDS)

ATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGAGCACTCTACCGTCTCCCACGACGGTGCTCGACGGCCCAGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGCCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTAGAATTCATATTTTAA

Protein sequence

MCSEPPHTVETTSTPTLPLSSLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELLWRVPALRELPPPPRLLNEAKQSTLPSPTTVLDGPERAGDGSKRWGSFRMFKDFVGGNGNDPSATGVDGGGGSGRFRRKRTSSLSVSSYARSHFLVEFIF
BLAST of Cla004892 vs. TrEMBL
Match: A0A0A0KJF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139380 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.5e-39
Identity = 105/170 (61.76%), Postives = 116/170 (68.24%), Query Frame = 1

Query: 1   MCSEPPHTVE--TTSTPTLPLSSLPP-EPPWMPTPPRLTLASVPFLWEEAPGKP-RPSPA 60
           MCSEPPH+     TSTPTLPLS LP  EPPWMPTPPRLTL SVPFLWEEAPGKP RPS A
Sbjct: 1   MCSEPPHSTHHPPTSTPTLPLSWLPVLEPPWMPTPPRLTLVSVPFLWEEAPGKPRRPSAA 60

Query: 61  SELLWRVP--ALRELPPPPRLL-NE-AKQS-TLPSPTTVLDGPERAGD---GSKRWGSFR 120
           S++LW+VP  A  +LPPPPRLL NE  KQS  L SPT V++G ++ G    GSKRWGSFR
Sbjct: 61  SKVLWQVPVVAAGKLPPPPRLLKNEVVKQSNNLASPTRVVEGDDQRGGVVVGSKRWGSFR 120

Query: 121 MFKDFVGGNGNDPSATGVDGGGGSGRFRRKR---TSSLSVSSYARSHFLV 156
           M                     GSGRFRR R   +SSLS+SSYA SHFLV
Sbjct: 121 MC-----------------DSNGSGRFRRGRSASSSSLSLSSYATSHFLV 153

BLAST of Cla004892 vs. TrEMBL
Match: A0A0B0PS77_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11236 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 80/186 (43.01%), Postives = 91/186 (48.92%), Query Frame = 1

Query: 10  ETTSTPTLPLSSLPP----EPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELLWRVPA 69
           ETT TP L L S P     EPP + TPP  T AS+PF WEEAPGKPR  PA+E   +   
Sbjct: 10  ETTHTPKLLLYSFPSKAAEEPPGIATPPIHTSASIPFQWEEAPGKPRSCPAAESQPKPHT 69

Query: 70  LRELPPPPRLLNEAKQSTLPSPTTVLDGPE-----------------RAGD--------- 129
            R L  PPRLL EAK + +PSPTTVLD P+                 R+ D         
Sbjct: 70  ARCLELPPRLLAEAKVANMPSPTTVLDWPDSGRVVSRTLSFRKGGSFRSPDNKRLSKEKV 129

Query: 130 --GSKRWGSFRMFKDFVGGNGND----PSATGVDGGGGSGR-----FRRKRTSSLSVSSY 155
             GS RWGSFR     V G+  D    P   G DGGG  G       R +R  SL   + 
Sbjct: 130 LFGSSRWGSFRKAGRVVQGSSFDSSDPPMVNGRDGGGSGGGTQVKITRVRRKGSLLSLTQ 189

BLAST of Cla004892 vs. TrEMBL
Match: A0A061G957_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015429 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 78/188 (41.49%), Postives = 90/188 (47.87%), Query Frame = 1

Query: 10  ETTSTPTLPLSSLPP---EPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELL---WRV 69
           ETTSTP L L S P    EP  M TPP  T  S+PF WEEAPGKPRP P ++      + 
Sbjct: 8   ETTSTPKLSLYSFPSKAKEPSGMKTPPIHTSVSIPFQWEEAPGKPRPCPRTDTTSTQSKP 67

Query: 70  PALRELPPPPRLLNEAKQSTLPSPTTVLDGP----------------------------- 129
            + R L  PPRLL EAK + +PSPTTVLDGP                             
Sbjct: 68  KSARCLELPPRLLAEAKVANMPSPTTVLDGPNAGRFVSYTLSFRKGGSFRIPDNNKRLNK 127

Query: 130 ERAGDGSKRWGSFRMFKDFVGGNGNDPSATGVDGGGGSGR--------FRRKRTSSLSVS 155
           E+   GS RWGSFR     V G+ +  S   VDGGGG            R +R  SL   
Sbjct: 128 EKVIFGSSRWGSFRKAGRIVQGSFDFSSTPVVDGGGGGSSGGGTQVNITRVRRKGSLLSL 187

BLAST of Cla004892 vs. TrEMBL
Match: A0A0D2UAE0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G268100 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.1e-21
Identity = 79/186 (42.47%), Postives = 90/186 (48.39%), Query Frame = 1

Query: 10  ETTSTPTLPLSSLPP----EPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELLWRVPA 69
           ETT TP L L   P     EPP + TPP  T AS+PF WEEAPGKPR  PA E   +   
Sbjct: 10  ETTHTPKLSLYLFPSKAAEEPPGIATPPIHTSASIPFQWEEAPGKPRSCPAGESQPKPHT 69

Query: 70  LRELPPPPRLLNEAKQSTLPSPTTVLDGPE-----------------RAGD--------- 129
            R L  PPRLL EAK + +PSPTTVLDGP+                 R+ D         
Sbjct: 70  ARCLELPPRLLAEAKVANMPSPTTVLDGPDSGRVVSRTLSFRKGGSFRSPDNKRLSKEKV 129

Query: 130 --GSKRWGSFRMFKDFVG----GNGNDPSATGVDGGGGSGR-----FRRKRTSSLSVSSY 155
             GS RWGSFR     V     G+ + P   G DGGG  G       R +R  SL   + 
Sbjct: 130 LFGSSRWGSFRKAGRGVQGSSFGSSDPPVVDGRDGGGSGGGTQVKITRVRRKGSLLSLTQ 189

BLAST of Cla004892 vs. TrEMBL
Match: M5XFL1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015318mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.2e-21
Identity = 80/192 (41.67%), Postives = 97/192 (50.52%), Query Frame = 1

Query: 1   MCSEPPHTVETTSTPTLPLSSLP---PEPPWMPTPPRLTLASVPFLWEEAPGKPRPSPAS 60
           M SEP       +TP L L SLP   PEPP M TPP  T  SVPF WEEAPGKPR    +
Sbjct: 1   MGSEPVKEACVCATPKLSLFSLPNQPPEPPGMLTPPLQTSVSVPFQWEEAPGKPRHCSTT 60

Query: 61  ELLWRVPALRELPPPPRLLNEAKQST-LPSPTTVLDGPE--------------------- 120
           E   +    R L  PPRLLNEA ++T +PSPTTVL+GP+                     
Sbjct: 61  ES--KAKCARSLELPPRLLNEAAKTTNMPSPTTVLEGPDVGRTLSFSFRVRSPDSLGSKR 120

Query: 121 -------RAGDGSKRWGSFRMFKDFVGGNGND--PSATGVDGGGGSGRFR------RKRT 153
                    G GS +WGSFR  K+ V   G D  P A G  G GG+G  +      R+R 
Sbjct: 121 IGKESGRGGGFGSMKWGSFRKNKEVVDHGGFDFLPPAGG-SGRGGAGETKVKITRVRRRA 180

BLAST of Cla004892 vs. NCBI nr
Match: gi|659074444|ref|XP_008437607.1| (PREDICTED: uncharacterized protein LOC103482969 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 6.5e-44
Identity = 110/163 (67.48%), Postives = 120/163 (73.62%), Query Frame = 1

Query: 1   MCSEPPHTVE-TTSTPTLPLSSLPP-EPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASE 60
           MCSEPPHT    TSTPTLPLS LP  + PWMPTPPRLTL SVPFLWEEAPGKPRPS AS+
Sbjct: 1   MCSEPPHTTHHPTSTPTLPLSWLPVLDSPWMPTPPRLTLVSVPFLWEEAPGKPRPSTASK 60

Query: 61  LLWRVPALR-ELPPPPRLL-NEAKQS-TLPSPTTVLDGPERAG-DGSKRWGSFRMFKDFV 120
           +LW+VP +  +LPPPPRLL NE KQS  LPSPTTVLDG ER G  GSKRWGSFRM +   
Sbjct: 61  VLWQVPVVAGKLPPPPRLLKNEVKQSNNLPSPTTVLDGDERGGMVGSKRWGSFRMCE--- 120

Query: 121 GGNGNDPSATGVDGGGGSGRFRRKRT-SSLSVSSYARSH-FLV 156
                       + GGGSGRFRR R+ SSLS+SSYA S  FLV
Sbjct: 121 ------------NNGGGSGRFRRGRSASSLSLSSYATSSPFLV 148

BLAST of Cla004892 vs. NCBI nr
Match: gi|778698860|ref|XP_011654611.1| (PREDICTED: uncharacterized protein LOC105435423 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-38
Identity = 105/170 (61.76%), Postives = 116/170 (68.24%), Query Frame = 1

Query: 1   MCSEPPHTVE--TTSTPTLPLSSLPP-EPPWMPTPPRLTLASVPFLWEEAPGKP-RPSPA 60
           MCSEPPH+     TSTPTLPLS LP  EPPWMPTPPRLTL SVPFLWEEAPGKP RPS A
Sbjct: 1   MCSEPPHSTHHPPTSTPTLPLSWLPVLEPPWMPTPPRLTLVSVPFLWEEAPGKPRRPSAA 60

Query: 61  SELLWRVP--ALRELPPPPRLL-NE-AKQS-TLPSPTTVLDGPERAGD---GSKRWGSFR 120
           S++LW+VP  A  +LPPPPRLL NE  KQS  L SPT V++G ++ G    GSKRWGSFR
Sbjct: 61  SKVLWQVPVVAAGKLPPPPRLLKNEVVKQSNNLASPTRVVEGDDQRGGVVVGSKRWGSFR 120

Query: 121 MFKDFVGGNGNDPSATGVDGGGGSGRFRRKR---TSSLSVSSYARSHFLV 156
           M                     GSGRFRR R   +SSLS+SSYA SHFLV
Sbjct: 121 MC-----------------DSNGSGRFRRGRSASSSSLSLSSYATSHFLV 153

BLAST of Cla004892 vs. NCBI nr
Match: gi|728848432|gb|KHG27875.1| (hypothetical protein F383_11236 [Gossypium arboreum])

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 80/186 (43.01%), Postives = 91/186 (48.92%), Query Frame = 1

Query: 10  ETTSTPTLPLSSLPP----EPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELLWRVPA 69
           ETT TP L L S P     EPP + TPP  T AS+PF WEEAPGKPR  PA+E   +   
Sbjct: 10  ETTHTPKLLLYSFPSKAAEEPPGIATPPIHTSASIPFQWEEAPGKPRSCPAAESQPKPHT 69

Query: 70  LRELPPPPRLLNEAKQSTLPSPTTVLDGPE-----------------RAGD--------- 129
            R L  PPRLL EAK + +PSPTTVLD P+                 R+ D         
Sbjct: 70  ARCLELPPRLLAEAKVANMPSPTTVLDWPDSGRVVSRTLSFRKGGSFRSPDNKRLSKEKV 129

Query: 130 --GSKRWGSFRMFKDFVGGNGND----PSATGVDGGGGSGR-----FRRKRTSSLSVSSY 155
             GS RWGSFR     V G+  D    P   G DGGG  G       R +R  SL   + 
Sbjct: 130 LFGSSRWGSFRKAGRVVQGSSFDSSDPPMVNGRDGGGSGGGTQVKITRVRRKGSLLSLTQ 189

BLAST of Cla004892 vs. NCBI nr
Match: gi|590674120|ref|XP_007039078.1| (Uncharacterized protein TCM_015429 [Theobroma cacao])

HSP 1 Score: 109.8 bits (273), Expect = 4.5e-21
Identity = 78/188 (41.49%), Postives = 90/188 (47.87%), Query Frame = 1

Query: 10  ETTSTPTLPLSSLPP---EPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELL---WRV 69
           ETTSTP L L S P    EP  M TPP  T  S+PF WEEAPGKPRP P ++      + 
Sbjct: 8   ETTSTPKLSLYSFPSKAKEPSGMKTPPIHTSVSIPFQWEEAPGKPRPCPRTDTTSTQSKP 67

Query: 70  PALRELPPPPRLLNEAKQSTLPSPTTVLDGP----------------------------- 129
            + R L  PPRLL EAK + +PSPTTVLDGP                             
Sbjct: 68  KSARCLELPPRLLAEAKVANMPSPTTVLDGPNAGRFVSYTLSFRKGGSFRIPDNNKRLNK 127

Query: 130 ERAGDGSKRWGSFRMFKDFVGGNGNDPSATGVDGGGGSGR--------FRRKRTSSLSVS 155
           E+   GS RWGSFR     V G+ +  S   VDGGGG            R +R  SL   
Sbjct: 128 EKVIFGSSRWGSFRKAGRIVQGSFDFSSTPVVDGGGGGSSGGGTQVNITRVRRKGSLLSL 187

BLAST of Cla004892 vs. NCBI nr
Match: gi|823214458|ref|XP_012439981.1| (PREDICTED: uncharacterized protein At4g00950-like [Gossypium raimondii])

HSP 1 Score: 109.4 bits (272), Expect = 5.9e-21
Identity = 79/186 (42.47%), Postives = 90/186 (48.39%), Query Frame = 1

Query: 10  ETTSTPTLPLSSLPP----EPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELLWRVPA 69
           ETT TP L L   P     EPP + TPP  T AS+PF WEEAPGKPR  PA E   +   
Sbjct: 10  ETTHTPKLSLYLFPSKAAEEPPGIATPPIHTSASIPFQWEEAPGKPRSCPAGESQPKPHT 69

Query: 70  LRELPPPPRLLNEAKQSTLPSPTTVLDGPE-----------------RAGD--------- 129
            R L  PPRLL EAK + +PSPTTVLDGP+                 R+ D         
Sbjct: 70  ARCLELPPRLLAEAKVANMPSPTTVLDGPDSGRVVSRTLSFRKGGSFRSPDNKRLSKEKV 129

Query: 130 --GSKRWGSFRMFKDFVG----GNGNDPSATGVDGGGGSGR-----FRRKRTSSLSVSSY 155
             GS RWGSFR     V     G+ + P   G DGGG  G       R +R  SL   + 
Sbjct: 130 LFGSSRWGSFRKAGRGVQGSSFGSSDPPVVDGRDGGGSGGGTQVKITRVRRKGSLLSLTQ 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KJF7_CUCSA7.5e-3961.76Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139380 PE=4 SV=1[more]
A0A0B0PS77_GOSAR1.4e-2143.01Uncharacterized protein OS=Gossypium arboreum GN=F383_11236 PE=4 SV=1[more]
A0A061G957_THECC3.2e-2141.49Uncharacterized protein OS=Theobroma cacao GN=TCM_015429 PE=4 SV=1[more]
A0A0D2UAE0_GOSRA4.1e-2142.47Uncharacterized protein OS=Gossypium raimondii GN=B456_008G268100 PE=4 SV=1[more]
M5XFL1_PRUPE9.2e-2141.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015318mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659074444|ref|XP_008437607.1|6.5e-4467.48PREDICTED: uncharacterized protein LOC103482969 [Cucumis melo][more]
gi|778698860|ref|XP_011654611.1|1.1e-3861.76PREDICTED: uncharacterized protein LOC105435423 [Cucumis sativus][more]
gi|728848432|gb|KHG27875.1|2.0e-2143.01hypothetical protein F383_11236 [Gossypium arboreum][more]
gi|590674120|ref|XP_007039078.1|4.5e-2141.49Uncharacterized protein TCM_015429 [Theobroma cacao][more]
gi|823214458|ref|XP_012439981.1|5.9e-2142.47PREDICTED: uncharacterized protein At4g00950-like [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004892Cla004892.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34371FAMILY NOT NAMEDcoord: 3..109
score: 4.3
NoneNo IPR availablePANTHERPTHR34371:SF2SUBFAMILY NOT NAMEDcoord: 3..109
score: 4.3

The following gene(s) are paralogous to this gene:

None