Cla004862 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004862
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Zinc finger-homeodomain protein 3 (Fragment) (AHRD V1 **-- B0LK14_SARHE); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region
Location	Chr10 : 12129160 .. 12129750 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCAGCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCCTATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCAGCACGGAAGCGAGTGCGGACGAAGTTCACGGAAGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGACGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA

mRNA sequence

ATGGAGGTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCAGCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCCTATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCAGCACGGAAGCGAGTGCGGACGAAGTTCACGGAAGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGACGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA

Coding sequence (CDS)

ATGGAGGTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCAGCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCCTATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCAGCACGGAAGCGAGTGCGGACGAAGTTCACGGAAGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGACGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA

Protein sequence

MEVEEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPILYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKESKQN

Homology

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BLAST of Cla004862 vs. Swiss-Prot
Match: ZHD2_ARATH (Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-41
Identity = 98/216 (45.37%), Postives = 120/216 (55.56%), Query Frame = 1


Query: 5   EHEEEDMEI--VEPASNYINKIHPLSRHTKNPSPVHSNPI--LYNYKECLKNHAVAVGGH 64
           E +EEDME+  V P   Y +     +  +       S  +     Y+ECLKNHAV +GGH
Sbjct: 4   EDQEEDMEMSGVNPPCGYDSLSGEGATSSGGGGVGRSKGVGAKIRYRECLKNHAVNIGGH 63

Query: 65  ALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNGESGSQY---ISYWRAP 124
           A+DGC EFMPSG  G+LDALKCAAC CHRNFHRK+    GG      + Y       + P
Sbjct: 64  AVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHRVPTYYNRPPQPHQPP 123

Query: 125 RMLALPSPSS----------------------ARKRVRTKFTEEQKEKMVEMAEKMEWRI 184
             L L SP++                        KR RTKFT EQKEKM+  AE++ WRI
Sbjct: 124 GYLHLTSPAAPYRPPAASGDEEDTSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRI 183

Query: 185 QKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSK 192
           QK D+ AV +FC E GV+R+VLK+WMHNNKN+   K
Sbjct: 184 QKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKK 219

[Close]

BLAST of Cla004862 vs. Swiss-Prot
Match: ZHD3_ORYSJ (Zinc-finger homeodomain protein 3 OS=Oryza sativa subsp. japonica GN=ZHD3 PE=3 SV=3)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 85/178 (47.75%), Postives = 102/178 (57.30%), Query Frame = 1


Query: 46  YKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVN-G 105
           Y+ECLKNHA A+GG A DGCGEFMP G  GSLDAL+C+AC CHRNFHRK++         
Sbjct: 74  YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELDAAAAPPLH 133

Query: 106 ESGSQYISYWRAPR----------MLALPSP-------------------------SSAR 165
               Q +     PR          + ALP P                         ++AR
Sbjct: 134 HHHHQLLGVGAHPRGHGHHHHHLLVAALPPPTRMVMPLSAMHTSESDDAAARPGGGAAAR 193

Query: 166 KRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNT 188
           KR RTKFT EQK +M+  AE++ WR+QK ++A V  FC E+GVKRRVLKVWMHNNK+T
Sbjct: 194 KRFRTKFTAEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLKVWMHNNKHT 251

[Close]

BLAST of Cla004862 vs. Swiss-Prot
Match: ZHD1_ARATH (Zinc-finger homeodomain protein 1 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.9e-38
Identity = 96/238 (40.34%), Postives = 124/238 (52.10%), Query Frame = 1


Query: 1   MEVEEHEEEDMEIVE--PASNYINKIHPLSRHTKNPSP---------VHSNP-ILYNYKE 60
           M + E EE+D  + +  P S  + K    S  T   +          VH      + ++E
Sbjct: 18  MNLHEEEEDDDAVYDSPPLSRVLPKASTESHETTGTTSTGGGGGFMVVHGGGGSRFRFRE 77

Query: 61  CLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDIT--DDGGVNGES 120
           CLKN AV +GGHA+DGCGEFMP+G  G++DALKCAAC CHRNFHRK++          + 
Sbjct: 78  CLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELPYFHHAPPQHQP 137

Query: 121 GSQYISYWRAPR--------------MLALPSP-----------SSA------RKRVRTK 180
                 ++R P                LALP P           SSA      RKR RTK
Sbjct: 138 PPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAGGGIRKRHRTK 197

Query: 181 FTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKES 194
           FT EQKE+M+ +AE++ WRIQ+ D+  +  FC E GV R+VLKVW+HNNK+T     S
Sbjct: 198 FTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSPS 255

[Close]

BLAST of Cla004862 vs. Swiss-Prot
Match: ZHD6_ARATH (Zinc-finger homeodomain protein 6 OS=Arabidopsis thaliana GN=ZHD6 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.9e-35
Identity = 98/265 (36.98%), Postives = 131/265 (49.43%), Query Frame = 1


Query: 1   MEVEEHEEEDMEIVEPASNYI--------------NKIHPLS-RHTKNPSP---VHSNPI 60
           MEV E ++E ME+    S+ +              NK  P + R+  +P P   + +NPI
Sbjct: 1   MEVREKKDEKMEMTRRKSSALDHHRLPPYTYSQTANKEKPTTKRNGSDPDPDPDLDTNPI 60

Query: 61  LYN------------------YKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAA 120
             +                  Y+EC KNHA + GGH +DGCGEFM SG  G++++L CAA
Sbjct: 61  SISHAPRSYARPQTTSPGKARYRECQKNHAASSGGHVVDGCGEFMSSGEEGTVESLLCAA 120

Query: 121 CHCHRNFHRKDITDDGGVNGES--------GSQYISYWRAPRMLAL------PSPSSA-- 180
           C CHR+FHRK+I     VN  S        GS+++S    P M++        + SS   
Sbjct: 121 CDCHRSFHRKEIDGLFVVNFNSFGHSQRPLGSRHVS----PIMMSFGGGGGCAAESSTED 180

Query: 181 ---------------------RKRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFC 193
                                +KR RTKF EEQKEKM+E AEK+ WR+ K ++  V  FC
Sbjct: 181 LNKFHQSFSGYGVDQFHHYQPKKRFRTKFNEEQKEKMMEFAEKIGWRMTKLEDDEVNRFC 240

[Close]

BLAST of Cla004862 vs. Swiss-Prot
Match: ZHD5_ORYSJ (Zinc-finger homeodomain protein 5 OS=Oryza sativa subsp. japonica GN=ZHD5 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-34
Identity = 89/240 (37.08%), Postives = 121/240 (50.42%), Query Frame = 1


Query: 1   MEVEEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPILYNYKECLKNHAVAVGGH 60
           ME+ EHEE+  ++    S+     H   R   + +P     I   Y ECL+NHA A GGH
Sbjct: 1   MELSEHEEDAGDVGGGCSSPPTPPH---RVLTSAAP---ETIRCRYHECLRNHAAASGGH 60

Query: 61  ALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNGESGSQYISYW------ 120
            +DGCGEFMP+      + L CAAC CHR+FHR+D +      G +G+  +         
Sbjct: 61  VVDGCGEFMPASTE---EPLACAACGCHRSFHRRDPSP-----GRAGAARLPQLHLPASI 120

Query: 121 --RAPRMLAL------------------------------------PSPSSARKRVRTKF 180
             RAP  L L                                    PSP   R+R RT F
Sbjct: 121 NSRAPPALLLPPAAAASKQGLPFPGYGTPSGGTGTTTASSSDERLRPSPVQPRRRSRTTF 180

Query: 181 TEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKESKQN 197
           T EQKE+M+  AE++ WRIQ+ +EA V  FC ++GV+R+ LKVWMHNNK++F+ K+ ++N
Sbjct: 181 TREQKEQMLAFAERVGWRIQRQEEATVEHFCAQVGVRRQALKVWMHNNKHSFKQKQQQEN 226

[Close]

BLAST of Cla004862 vs. TrEMBL
Match: A0A0D2NW20_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G042700 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.0e-46
Identity = 111/238 (46.64%), Postives = 138/238 (57.98%), Query Frame = 1


Query: 1   MEVEEHEEEDMEI-VEPASNYINKIHPLSRHTKNPSPV----HSNPILYNYKECLKNHAV 60
           ME E+ EE++ E+ + P+ + +     L      P  V            Y+ECLKNHAV
Sbjct: 1   MEFEDQEEQEEEMGLTPSYDSLGNSSRLKMSGVEPGSVTPTGQQQQRKPRYRECLKNHAV 60

Query: 61  AVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNG----------- 120
            +GGHALDGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ ++ G  N            
Sbjct: 61  GIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-SELGSPNSIHTTDLYFHHH 120

Query: 121 --ESGSQYISYWRAP----------RMLALPSPS-----------------SARKRVRTK 180
                 Q+  Y+RAP          R LALPS S                 S+RKR RTK
Sbjct: 121 HHHQPPQFAPYFRAPTGYLHVAGQQRPLALPSTSGGGGHSREDQEDASNQGSSRKRFRTK 180

Query: 181 FTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKES 194
           FT+EQKEKM+ +AE++ WRIQK DE  V +FCNE GVKR VLKVWMHNNK+T   K+S
Sbjct: 181 FTQEQKEKMLSLAERLGWRIQKHDEEIVQQFCNETGVKRHVLKVWMHNNKHTLALKQS 237

[Close]

BLAST of Cla004862 vs. TrEMBL
Match: A0A0B0PB58_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_07505 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.5e-46
Identity = 111/241 (46.06%), Postives = 139/241 (57.68%), Query Frame = 1


Query: 1   MEVEEHEEEDMEI-VEPASNYINKIHPLSRHTKNPSPV-------HSNPILYNYKECLKN 60
           ME E+ EE++ E+ + P+ + +     L      P  V               Y+ECLKN
Sbjct: 1   MEFEDQEEQEEEMGLTPSYDSLGNSSRLKMSGVEPGSVTPTGQQQQQQQRKPRYRECLKN 60

Query: 61  HAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNG-------- 120
           HAV +GGHALDGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ ++ G  N         
Sbjct: 61  HAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-SELGSPNSVHTTDLYF 120

Query: 121 -----ESGSQYISYWRAP----------RMLALPSPS-----------------SARKRV 180
                    Q+  Y+RAP          R LALPS S                 S+RKR 
Sbjct: 121 HHHHHHQPPQFAPYFRAPTGYLHVAGQQRPLALPSTSGGGGHSREDQEDASNQGSSRKRF 180

Query: 181 RTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKE 194
           RTKFT+EQKEKM+ +AE++ WRIQK DE  V +FCNE GVKR+VLKVWMHNNK+T   K+
Sbjct: 181 RTKFTQEQKEKMLSLAERLGWRIQKHDEEIVQQFCNETGVKRQVLKVWMHNNKHTLALKQ 240

[Close]

BLAST of Cla004862 vs. TrEMBL
Match: A0A0D2MJ39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G042700 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.8e-46
Identity = 110/236 (46.61%), Postives = 136/236 (57.63%), Query Frame = 1


Query: 1   MEVEEHEEEDMEI-VEPASNYINKIHPLSRHTKNPSPV----HSNPILYNYKECLKNHAV 60
           ME E+ EE++ E+ + P+ + +     L      P  V            Y+ECLKNHAV
Sbjct: 35  MEFEDQEEQEEEMGLTPSYDSLGNSSRLKMSGVEPGSVTPTGQQQQRKPRYRECLKNHAV 94

Query: 61  AVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNG----------- 120
            +GGHALDGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ ++ G  N            
Sbjct: 95  GIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-SELGSPNSIHTTDLYFHHH 154

Query: 121 --ESGSQYISYWRAP----------RMLALPSPS-----------------SARKRVRTK 180
                 Q+  Y+RAP          R LALPS S                 S+RKR RTK
Sbjct: 155 HHHQPPQFAPYFRAPTGYLHVAGQQRPLALPSTSGGGGHSREDQEDASNQGSSRKRFRTK 214

Query: 181 FTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSK 192
           FT+EQKEKM+ +AE++ WRIQK DE  V +FCNE GVKR VLKVWMHNNK+T   K
Sbjct: 215 FTQEQKEKMLSLAERLGWRIQKHDEEIVQQFCNETGVKRHVLKVWMHNNKHTLGKK 269

[Close]

BLAST of Cla004862 vs. TrEMBL
Match: A0A067KBY6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18680 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45
Identity = 107/241 (44.40%), Postives = 135/241 (56.02%), Query Frame = 1


Query: 4   EEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPILYNYKECLKNHAVAVGGHALD 63
           EEH+EE+   +  + + +     +   +      HS      Y+ECLKNHAV +GGHA+D
Sbjct: 7   EEHDEEEEMDLPASYDSLGNSTRVKMTSSGAETGHSTKP--RYRECLKNHAVGIGGHAVD 66

Query: 64  GCGEFMPSGPHGSLDALKCAACHCHRNFHRK---DITDDGGVNGESGS------------ 123
           GCGEFMP+G  G+LDALKCAAC+CHRNFHRK   + T+ GG  G  G             
Sbjct: 67  GCGEFMPAGAEGTLDALKCAACNCHRNFHRKETNETTNPGGGGGGGGELFFHGHPHPHHL 126

Query: 124 ---QYISYWRAP-----------RMLALPSPS------------------------SARK 183
              Q+  Y+R P           R LALPS S                        S+RK
Sbjct: 127 QVPQFTPYYRTPAGYLHVAPPQQRPLALPSTSGGQSREDQEDVSNPSGGGFGSGGGSSRK 186

Query: 184 RVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRS 192
           R RTKFT++QKE+M+ +AE++ WRIQK DEA V +FCNE GVKR VLKVWMHNNK+T   
Sbjct: 187 RFRTKFTQDQKERMLSLAERLGWRIQKHDEAVVQQFCNETGVKRHVLKVWMHNNKHTLGK 245

[Close]

BLAST of Cla004862 vs. TrEMBL
Match: A0A0D2T2Y4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G092000 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.3e-45
Identity = 109/235 (46.38%), Postives = 137/235 (58.30%), Query Frame = 1


Query: 1   MEVEEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPI--------LYNYKECLKN 60
           ME EE EEE    +  A +Y + ++  +    +  P    P            Y+ECLKN
Sbjct: 1   MEFEEQEEE----MGLAPSYNSLVNSTAVKMSDAEPGSITPTGQQQQQQRKRRYRECLKN 60

Query: 61  HAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNG-------- 120
           HAV +GGHA+DGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ T+    N         
Sbjct: 61  HAVGIGGHAVDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-TEPNSPNTFPSTDLYF 120

Query: 121 ESGSQYISYWRAP----------RMLALPSPS------------------SARKRVRTKF 180
              +Q+  Y+RAP          R+LALPS S                  S+RKR RTKF
Sbjct: 121 HQPTQFTPYFRAPTGYLHVAGQQRLLALPSTSGGGGGHSREDQEDVSNQGSSRKRFRTKF 180

Query: 181 TEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSK 192
           T +QKEKM+E+AE++ WRIQK DE  V +FCNE GVKR+V KVWMHNNK+T   K
Sbjct: 181 THDQKEKMLELAERIGWRIQKHDELLVQQFCNENGVKRQVFKVWMHNNKHTLGKK 230

[Close]

BLAST of Cla004862 vs. NCBI nr
Match: gi|1012124930|ref|XP_015963376.1| (PREDICTED: zinc-finger homeodomain protein 1-like [Arachis duranensis])

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-47
Identity = 114/261 (43.68%), Postives = 140/261 (53.64%), Query Frame = 1


Query: 1   MEVEEHEEEDMEIVEPASNYINKI-----------------HPLSRHTKNPSPVHSNPIL 60
           ME +E EE++ E+  P     + I                  P++    N +   SN + 
Sbjct: 1   MEFDEQEEQEEELCVPGGTGYDPIGNPTRVKMSGSEPMLVVQPMTVRNNNNNNNSSNMVK 60

Query: 61  YNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVN 120
             Y+ECLKNHAV +GGHALDGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ T+  G  
Sbjct: 61  PKYRECLKNHAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-TELAGAG 120

Query: 121 GESGSQYI--------------SYWRAPR-------------MLALPSP----------- 180
              G  Y+              +Y+R P               LALPS            
Sbjct: 121 PGGGGPYLLTHHPHHHQPPPFAAYYRTPAGYLHVSGGQQRAGTLALPSTSGAGGGGTARD 180

Query: 181 ----------------SSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNE 191
                           SS+RKR RTKFT+EQKEKM+E+AE++ WRIQK DE AV EFCNE
Sbjct: 181 FEQEDVSGGGGGGGGGSSSRKRFRTKFTQEQKEKMLELAERLGWRIQKHDEGAVQEFCNE 240

[Close]

BLAST of Cla004862 vs. NCBI nr
Match: gi|1021511336|ref|XP_016198940.1| (PREDICTED: zinc-finger homeodomain protein 2-like [Arachis ipaensis])

HSP 1 Score: 194.1 bits (492), Expect = 2.3e-46
Identity = 110/239 (46.03%), Postives = 137/239 (57.32%), Query Frame = 1


Query: 1   MEVEEHEEEDMEIVEPA-----------------SNYINKIHPLSRHTKNPSPVHSNPIL 60
           ME +E EE++ E+  P                  S  +  + P++    N +   SN + 
Sbjct: 1   MEFDEQEEQEEELCVPGGTGYDPLGNPTRVKMSGSEPMLVVQPMTVRNNNNNN-SSNMVK 60

Query: 61  YNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVN 120
             Y+ECLKNHAV +GGHALDGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ T+  G  
Sbjct: 61  PRYRECLKNHAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-TELAGAG 120

Query: 121 GESGSQYI--------------SYWRAPR-------------MLALPSPSSA-----RKR 180
              G  Y+              +Y+R P               LALPS S A      + 
Sbjct: 121 PGGGGPYLLTHHPHHHQPPPFAAYYRTPAGYLHVSGGQQRAGTLALPSTSGAGGGGTARD 180

Query: 181 VRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRS 191
             TKFT+EQKEKM+E+AE++ WRIQK DE AV EFCNE GVKR VLKVWMHNNK+T  S
Sbjct: 181 FETKFTQEQKEKMLELAERLGWRIQKHDEGAVQEFCNETGVKRHVLKVWMHNNKHTLAS 237

[Close]

BLAST of Cla004862 vs. NCBI nr
Match: gi|823139955|ref|XP_012469839.1| (PREDICTED: zinc-finger homeodomain protein 2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 193.7 bits (491), Expect = 2.9e-46
Identity = 111/238 (46.64%), Postives = 138/238 (57.98%), Query Frame = 1


Query: 1   MEVEEHEEEDMEI-VEPASNYINKIHPLSRHTKNPSPV----HSNPILYNYKECLKNHAV 60
           ME E+ EE++ E+ + P+ + +     L      P  V            Y+ECLKNHAV
Sbjct: 1   MEFEDQEEQEEEMGLTPSYDSLGNSSRLKMSGVEPGSVTPTGQQQQRKPRYRECLKNHAV 60

Query: 61  AVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNG----------- 120
            +GGHALDGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ ++ G  N            
Sbjct: 61  GIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-SELGSPNSIHTTDLYFHHH 120

Query: 121 --ESGSQYISYWRAP----------RMLALPSPS-----------------SARKRVRTK 180
                 Q+  Y+RAP          R LALPS S                 S+RKR RTK
Sbjct: 121 HHHQPPQFAPYFRAPTGYLHVAGQQRPLALPSTSGGGGHSREDQEDASNQGSSRKRFRTK 180

Query: 181 FTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKES 194
           FT+EQKEKM+ +AE++ WRIQK DE  V +FCNE GVKR VLKVWMHNNK+T   K+S
Sbjct: 181 FTQEQKEKMLSLAERLGWRIQKHDEEIVQQFCNETGVKRHVLKVWMHNNKHTLALKQS 237

[Close]

BLAST of Cla004862 vs. NCBI nr
Match: gi|728842732|gb|KHG22175.1| (hypothetical protein F383_07505 [Gossypium arboreum])

HSP 1 Score: 193.0 bits (489), Expect = 5.0e-46
Identity = 111/241 (46.06%), Postives = 139/241 (57.68%), Query Frame = 1


Query: 1   MEVEEHEEEDMEI-VEPASNYINKIHPLSRHTKNPSPV-------HSNPILYNYKECLKN 60
           ME E+ EE++ E+ + P+ + +     L      P  V               Y+ECLKN
Sbjct: 1   MEFEDQEEQEEEMGLTPSYDSLGNSSRLKMSGVEPGSVTPTGQQQQQQQRKPRYRECLKN 60

Query: 61  HAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNG-------- 120
           HAV +GGHALDGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ ++ G  N         
Sbjct: 61  HAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-SELGSPNSVHTTDLYF 120

Query: 121 -----ESGSQYISYWRAP----------RMLALPSPS-----------------SARKRV 180
                    Q+  Y+RAP          R LALPS S                 S+RKR 
Sbjct: 121 HHHHHHQPPQFAPYFRAPTGYLHVAGQQRPLALPSTSGGGGHSREDQEDASNQGSSRKRF 180

Query: 181 RTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKE 194
           RTKFT+EQKEKM+ +AE++ WRIQK DE  V +FCNE GVKR+VLKVWMHNNK+T   K+
Sbjct: 181 RTKFTQEQKEKMLSLAERLGWRIQKHDEEIVQQFCNETGVKRQVLKVWMHNNKHTLALKQ 240

[Close]

BLAST of Cla004862 vs. NCBI nr
Match: gi|763750859|gb|KJB18247.1| (hypothetical protein B456_003G042700 [Gossypium raimondii])

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 110/236 (46.61%), Postives = 136/236 (57.63%), Query Frame = 1


Query: 1   MEVEEHEEEDMEI-VEPASNYINKIHPLSRHTKNPSPV----HSNPILYNYKECLKNHAV 60
           ME E+ EE++ E+ + P+ + +     L      P  V            Y+ECLKNHAV
Sbjct: 35  MEFEDQEEQEEEMGLTPSYDSLGNSSRLKMSGVEPGSVTPTGQQQQRKPRYRECLKNHAV 94

Query: 61  AVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNG----------- 120
            +GGHALDGCGEFMP+G  G+LDALKCAAC+CHRNFHRK+ ++ G  N            
Sbjct: 95  GIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKE-SELGSPNSIHTTDLYFHHH 154

Query: 121 --ESGSQYISYWRAP----------RMLALPSPS-----------------SARKRVRTK 180
                 Q+  Y+RAP          R LALPS S                 S+RKR RTK
Sbjct: 155 HHHQPPQFAPYFRAPTGYLHVAGQQRPLALPSTSGGGGHSREDQEDASNQGSSRKRFRTK 214

Query: 181 FTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSK 192
           FT+EQKEKM+ +AE++ WRIQK DE  V +FCNE GVKR VLKVWMHNNK+T   K
Sbjct: 215 FTQEQKEKMLSLAERLGWRIQKHDEEIVQQFCNETGVKRHVLKVWMHNNKHTLGKK 269

The following BLAST results are available for this feature:

BLAST of Cla004862 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZHD2_ARATH	2.2e-41	45.37	Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1	[more]
ZHD3_ORYSJ	1.0e-38	47.75	Zinc-finger homeodomain protein 3 OS=Oryza sativa subsp. japonica GN=ZHD3 PE=3 S...	[more]
ZHD1_ARATH	2.9e-38	40.34	Zinc-finger homeodomain protein 1 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1	[more]
ZHD6_ARATH	8.9e-35	36.98	Zinc-finger homeodomain protein 6 OS=Arabidopsis thaliana GN=ZHD6 PE=1 SV=1	[more]
ZHD5_ORYSJ	1.2e-34	37.08	Zinc-finger homeodomain protein 5 OS=Oryza sativa subsp. japonica GN=ZHD5 PE=3 S...	[more]

BLAST of Cla004862 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2NW20_GOSRA	2.0e-46	46.64	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G042700 PE=4 SV=1	[more]
A0A0B0PB58_GOSAR	3.5e-46	46.06	Uncharacterized protein OS=Gossypium arboreum GN=F383_07505 PE=4 SV=1	[more]
A0A0D2MJ39_GOSRA	7.8e-46	46.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G042700 PE=4 SV=1	[more]
A0A067KBY6_JATCU	1.3e-45	44.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18680 PE=4 SV=1	[more]
A0A0D2T2Y4_GOSRA	2.3e-45	46.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G092000 PE=4 SV=1	[more]

BLAST of Cla004862 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012124930\|ref\|XP_015963376.1\|	2.0e-47	43.68	PREDICTED: zinc-finger homeodomain protein 1-like [Arachis duranensis]	[more]
gi\|1021511336\|ref\|XP_016198940.1\|	2.3e-46	46.03	PREDICTED: zinc-finger homeodomain protein 2-like [Arachis ipaensis]	[more]
gi\|823139955\|ref\|XP_012469839.1\|	2.9e-46	46.64	PREDICTED: zinc-finger homeodomain protein 2 isoform X1 [Gossypium raimondii]	[more]
gi\|728842732\|gb\|KHG22175.1\|	5.0e-46	46.06	hypothetical protein F383_07505 [Gossypium arboreum]	[more]
gi\|763750859\|gb\|KJB18247.1\|	1.1e-45	46.61	hypothetical protein B456_003G042700 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006455	Homeodomain_ZF_HD
IPR006456	ZF_HD_homeobox_Cys/His_dimer
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004862	Cla004862.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006455	Homeodomain, ZF-HD class	TIGRFAMs	TIGR01565	TIGR01565	coord: 129..186 score: 3.9
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PRODOM	PD125774		coord: 46..95 score: 6.0
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PFAM	PF04770	ZF-HD_dimer	coord: 45..95 score: 7.2
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	TIGRFAMs	TIGR01566	TIGR01566	coord: 45..95 score: 4.0
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PROFILE	PS51523	ZF_HD_DIMER	coord: 46..95 score: 27
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 124..190 score: 1.2
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 123..189 score: 8.03
None	No IPR available	PANTHER	PTHR31948	FAMILY NOT NAMED	coord: 18..193 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004862	Cla97C10G191960	Watermelon (97103) v2	wmwmbB059
Cla004862	ClCG10G008590	Watermelon (Charleston Gray)	wcgwmB059
Cla004862	CmaCh04G008370	Cucurbita maxima (Rimu)	cmawmB654
Cla004862	Lsi05G008250	Bottle gourd (USVL1VR-Ls)	lsiwmB353
Cla004862	Cp4.1LG01g09000	Cucurbita pepo (Zucchini)	cpewmB383
Cla004862	Carg14238	Silver-seed gourd	carwmB0939
Cla004862	Bhi11G000704	Wax gourd	wgowmB016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004862	Wax gourd	wgowmB029
Cla004862	Cucumber (Gy14) v1	cgywmB714
Cla004862	Melon (DHL92) v3.5.1	mewmB494
Cla004862	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla004862	Melon (DHL92) v3.6.1	medwmB480