Cla004738 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004738
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Transcription initiation factor IIF beta subunit (AHRD V1 **** F4J6V5_ARATH); contains Interpro domain(s) IPR003196 Transcription initiation factor IIF, beta subunit
Location	Chr9 : 32564575 .. 32565873 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCACATGATCAGAATCTTGAGAGGTACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTCTCCTTTGTAACTTCTTATGCAGCGTAGTTGGGTGTTTGGTTACTTTATTTATTGCTCCCATGATCTTCTGGTTAAAATTCCCAAATATTCCATATAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGTAATTATCCTACATTCATTTCTACTTTGTTTGATATCATTATCAAATTAAAAATTTGATTTTGCCTGTGCTATAATTAAATACCCTCGTCGTCAATCAGAAGTTTGTCCAAATGCTTCCAAGAATTACTTTTTACTATTGTGAACATGTGTGATACTAATTTTGGTTCAGGAGAAGAAGAAAGTGGTGACCAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTTTTTGAAAGACAGGCATATTGGACATCAAAACAATTGATTCAAGAGACTGACCAACCTGAAGTAAGATTTATCATTTTTTTTTTTTTTATTATTATTATTATTTTTTTGGTTTAAGAAACAAAGGAAGTGCATTGAATGATCACAAAAGGAATACACCCTAGAGTCGGAAGGGTGTAAAACCCACTCCCCTAGATTTAACATTAAGCTAGGCTATAATTGCATAAAAATGTCTTGCGTATTTAGACACCATAAGGAAGAGTTCGATTGTACACTTATCGAATACTAAGCTTGCATGTATAGTTTATCATCTGGTTTTTTCCGTTTATATATAATTGAAACCACATTAGTAAATGCAAATATAGTTACATGAAATTGTGGTTTTATGCCGATTAGCTTTTTGCGACTAGAGTCTTACAGTTGTGATCAACTTGAACATAATTCTGGAATATAAAGATGAATTGTACTTTATATCCACTCCCCTAACTTTCATTTAGAAAAAGGTCACACATCTCTCTTAAACATCTGCATCCATAGGAAAGATGCAAATGAACTGCTCGCTTGAAACACTACAGTTCTAGTTGATAGCTTGATTCTGCTTCTTGTTAGGCTACCACTTGCATTGATTGAAGGCTGAAACATCCAATCTTTCTTTTTTGCAGCAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGCGCTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCAGGTGAGGAAACGAAACCGTGGTAG

mRNA sequence

ATGAAGCCACATGATCAGAATCTTGAGAGGTACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTGACCAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTTTTTGAAAGACAGGCATATTGGACATCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGCGCTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCAGGTGAGGAAACGAAACCGTGGTAG

Coding sequence (CDS)

ATGAAGCCACATGATCAGAATCTTGAGAGGTACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTGACCAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTTTTTGAAAGACAGGCATATTGGACATCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGCGCTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCAGGTGAGGAAACGAAACCGTGGTAG

Protein sequence

MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKPW

Homology

[Close]

BLAST of Cla004738 vs. Swiss-Prot
Match: T2FB_XENLA (General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-14
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 1


Query: 9   ERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKR 68
           + Y ++ R++  +S    RQ Q ++     + +P+       +    +KK   K  + KR
Sbjct: 137 DNYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPVSNHQ---YNIEYEKK---KKDDGKR 196

Query: 69  LRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYEL 128
            R ++ ++  ++F  FE+  Y+  K L+  T QP  Y+KEIL+D+ +YN KG H+ T+EL
Sbjct: 197 ARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKNTWEL 256

Query: 129 KPEYKESGEETK 141
           KPEY+    E K
Sbjct: 257 KPEYRHYQGEDK 262

[Close]

BLAST of Cla004738 vs. Swiss-Prot
Match: T2FB_DROME (General transcription factor IIF subunit 2 OS=Drosophila melanogaster GN=TfIIFbeta PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 9.0e-13
Identity = 44/130 (33.85%), Postives = 68/130 (52.31%), Query Frame = 1


Query: 11  YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLR 70
           Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R
Sbjct: 142 YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKD-HAHNIEYRERKK-----AEGKKAR 201

Query: 71  KERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYELKP 130
            ++  +  ++F  FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK 
Sbjct: 202 DDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELKK 261

Query: 131 EYKESGEETK 141
           EY+    E K
Sbjct: 262 EYRHYKTEEK 264

[Close]

BLAST of Cla004738 vs. Swiss-Prot
Match: T2FB_MOUSE (General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-12
Identity = 45/132 (34.09%), Postives = 66/132 (50.00%), Query Frame = 1


Query: 9   ERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKR 68
           E Y KL R +  +S    R  Q +D V   + +P+      +     KKK      + KR
Sbjct: 122 ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY-NIEYERKKK-----EDGKR 181

Query: 69  LRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYEL 128
            R ++  +  ++F  FE+  Y+  K L+  T QP  Y+KEILK++ + N KG H+ T+EL
Sbjct: 182 ARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWEL 241

Query: 129 KPEYKESGEETK 141
           KPEY+    E K
Sbjct: 242 KPEYRHYQTEEK 247

[Close]

BLAST of Cla004738 vs. Swiss-Prot
Match: T2FB_HUMAN (General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-12
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = 1


Query: 9   ERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKR 68
           E Y +L R +  +S    R  Q +D V   + +P+      +     KKK      + KR
Sbjct: 122 ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY-NIEYERKKK-----EDGKR 181

Query: 69  LRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYEL 128
            R ++  +  ++F  FE+  Y+  K L+  T QP  Y+KEILK++ V N KG H+ T+EL
Sbjct: 182 ARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWEL 241

Query: 129 KPEYKE-SGEE 139
           KPEY+   GEE
Sbjct: 242 KPEYRHYQGEE 246

[Close]

BLAST of Cla004738 vs. Swiss-Prot
Match: T2FB_RAT (General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-12
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 1


Query: 9   ERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKR 68
           E Y KL R +  +S    R  Q  D V   + +P+      +     KKK      + KR
Sbjct: 122 ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQY-NIEYERKKK-----EDGKR 181

Query: 69  LRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYEL 128
            R ++  +  ++F  FE+  Y+  K L+  T QP  Y+KEILK++ + N KG H+ T+EL
Sbjct: 182 ARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWEL 241

Query: 129 KPEYKESGEETK 141
           KPEY+    E K
Sbjct: 242 KPEYRHYQTEEK 247

[Close]

BLAST of Cla004738 vs. TrEMBL
Match: A0A0A0KQP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G492360 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.4e-73
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV
Sbjct: 49  MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 108

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
           +KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKG
Sbjct: 109 SKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 168

Query: 121 AHQGTYELKPEYKESGEETKP 142
            HQGTYELKPEY+ES E+TKP
Sbjct: 169 VHQGTYELKPEYRESSEDTKP 189

[Close]

BLAST of Cla004738 vs. TrEMBL
Match: F6HNI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03980 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.4e-52
Identity = 98/141 (69.50%), Postives = 122/141 (86.52%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           MKPH++N++ YGKLCRERT K MTKSRQIQVID+  G HMRPMPGM V++   ++KKK+ 
Sbjct: 117 MKPHNENIQNYGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMPGM-VIASAVSDKKKMP 176

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
           TKGS+ KR R++RGE+E+I+F+LFERQ  WT +QLIQETDQPEQ++K++LKDLCVYNNKG
Sbjct: 177 TKGSDMKRTRRDRGEMEEILFKLFERQPNWTLRQLIQETDQPEQFLKDLLKDLCVYNNKG 236

Query: 121 AHQGTYELKPEYKESGEETKP 142
            +QGTYELKPEYK SGEE+ P
Sbjct: 237 TNQGTYELKPEYKRSGEESTP 256

[Close]

BLAST of Cla004738 vs. TrEMBL
Match: A0A061FUV7_THECC (JHL18I08.10 protein isoform 1 OS=Theobroma cacao GN=TCM_043099 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-50
Identity = 97/141 (68.79%), Postives = 118/141 (83.69%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           M+PHD+N+E YGKLCRERT+K MTKSRQIQVID+  G HMRPMPGM + +    EKKK  
Sbjct: 123 MRPHDENIENYGKLCRERTNKYMTKSRQIQVIDNDNGTHMRPMPGMMIATV-FNEKKKTP 182

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
           TK SETKR R++RGE+E I+F+LFERQ  WT +QLIQETDQPEQ++K+ILKDLCVYNNKG
Sbjct: 183 TKTSETKRTRRDRGEMEDIMFKLFERQPNWTLRQLIQETDQPEQFLKDILKDLCVYNNKG 242

Query: 121 AHQGTYELKPEYKESGEETKP 142
            +QG+YELKPEYK++  +T P
Sbjct: 243 TNQGSYELKPEYKKASNDTNP 262

[Close]

BLAST of Cla004738 vs. TrEMBL
Match: A0A0D2UXJ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G240900 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.4e-49
Identity = 95/141 (67.38%), Postives = 118/141 (83.69%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           M+PHD+N+E YGKLCRERT KSM KSRQIQVID+  G HMRPMPGM +++    EKKK  
Sbjct: 123 MRPHDENIENYGKLCRERTTKSMNKSRQIQVIDNDNGTHMRPMPGM-IIAAVFNEKKKAP 182

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
            K S+TKR R++RGE+E I+F+LFERQ+ WT +QLIQETDQPEQ++K+ILKDLC+YNNKG
Sbjct: 183 AKTSDTKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDILKDLCIYNNKG 242

Query: 121 AHQGTYELKPEYKESGEETKP 142
            +QGTYELKPEYK++ + T P
Sbjct: 243 TNQGTYELKPEYKKATDGTNP 262

[Close]

BLAST of Cla004738 vs. TrEMBL
Match: A0A067E024_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025926mg PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.2e-49
Identity = 94/137 (68.61%), Postives = 118/137 (86.13%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           M+PH +N+E YGKLCRERT+K MTKSRQIQVID+  G HMRPMPGM ++S G  EKKK  
Sbjct: 107 MRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM-MISTGFTEKKKPQ 166

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
            KGSE KR R++RGE+E I+F+LFERQ+ WT +QLIQETDQPEQ++K++LKDLCVYNNKG
Sbjct: 167 PKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKG 226

Query: 121 AHQGTYELKPEYKESGE 138
           ++QG+YELKPEYK++ +
Sbjct: 227 SNQGSYELKPEYKKAAD 242

[Close]

BLAST of Cla004738 vs. NCBI nr
Match: gi|659131398|ref|XP_008465665.1| (PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV
Sbjct: 136 MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 195

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
           +KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKG
Sbjct: 196 SKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 255

Query: 121 AHQGTYELKPEYKESGEETKP 142
            HQGTYELKPEYKES EETKP
Sbjct: 256 VHQGTYELKPEYKESSEETKP 276

[Close]

BLAST of Cla004738 vs. NCBI nr
Match: gi|659131396|ref|XP_008465664.1| (PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV
Sbjct: 142 MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 201

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
           +KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKG
Sbjct: 202 SKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 261

Query: 121 AHQGTYELKPEYKESGEETKP 142
            HQGTYELKPEYKES EETKP
Sbjct: 262 VHQGTYELKPEYKESSEETKP 282

[Close]

BLAST of Cla004738 vs. NCBI nr
Match: gi|700196037|gb|KGN51214.1| (hypothetical protein Csa_5G492360 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 7.8e-73
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV
Sbjct: 49  MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 108

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
           +KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKG
Sbjct: 109 SKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 168

Query: 121 AHQGTYELKPEYKESGEETKP 142
            HQGTYELKPEY+ES E+TKP
Sbjct: 169 VHQGTYELKPEYRESSEDTKP 189

[Close]

BLAST of Cla004738 vs. NCBI nr
Match: gi|449452114|ref|XP_004143805.1| (PREDICTED: general transcription factor IIF subunit 2 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 7.8e-73
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV
Sbjct: 136 MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 195

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
           +KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKG
Sbjct: 196 SKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 255

Query: 121 AHQGTYELKPEYKESGEETKP 142
            HQGTYELKPEY+ES E+TKP
Sbjct: 256 VHQGTYELKPEYRESSEDTKP 276

[Close]

BLAST of Cla004738 vs. NCBI nr
Match: gi|296086049|emb|CBI31490.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 213.0 bits (541), Expect = 3.4e-52
Identity = 98/141 (69.50%), Postives = 122/141 (86.52%), Query Frame = 1


Query: 1   MKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV 60
           MKPH++N++ YGKLCRERT K MTKSRQIQVID+  G HMRPMPGM V++   ++KKK+ 
Sbjct: 160 MKPHNENIQNYGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMPGM-VIASAVSDKKKMP 219

Query: 61  TKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKG 120
           TKGS+ KR R++RGE+E+I+F+LFERQ  WT +QLIQETDQPEQ++K++LKDLCVYNNKG
Sbjct: 220 TKGSDMKRTRRDRGEMEEILFKLFERQPNWTLRQLIQETDQPEQFLKDLLKDLCVYNNKG 279

Query: 121 AHQGTYELKPEYKESGEETKP 142
            +QGTYELKPEYK SGEE+ P
Sbjct: 280 TNQGTYELKPEYKRSGEESTP 299

The following BLAST results are available for this feature:

BLAST of Cla004738 vs. Swiss-Prot


Match Name	E-value	Identity	Description
T2FB_XENLA	6.3e-14	31.82	General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1	[more]
T2FB_DROME	9.0e-13	33.85	General transcription factor IIF subunit 2 OS=Drosophila melanogaster GN=TfIIFbe...	[more]
T2FB_MOUSE	2.0e-12	34.09	General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1	[more]
T2FB_HUMAN	3.4e-12	35.11	General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2	[more]
T2FB_RAT	4.5e-12	34.09	General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=1 S...	[more]

BLAST of Cla004738 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQP0_CUCSA	5.4e-73	95.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G492360 PE=4 SV=1	[more]
F6HNI2_VITVI	2.4e-52	69.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03980 PE=4 SV=...	[more]
A0A061FUV7_THECC	3.8e-50	68.79	JHL18I08.10 protein isoform 1 OS=Theobroma cacao GN=TCM_043099 PE=4 SV=1	[more]
A0A0D2UXJ1_GOSRA	2.4e-49	67.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G240900 PE=4 SV=1	[more]
A0A067E024_CITSI	3.2e-49	68.61	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025926mg PE=4 SV=1	[more]

BLAST of Cla004738 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131398\|ref\|XP_008465665.1\|	1.6e-73	96.45	PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]	[more]
gi\|659131396\|ref\|XP_008465664.1\|	1.6e-73	96.45	PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]	[more]
gi\|700196037\|gb\|KGN51214.1\|	7.8e-73	95.04	hypothetical protein Csa_5G492360 [Cucumis sativus]	[more]
gi\|449452114\|ref\|XP_004143805.1\|	7.8e-73	95.04	PREDICTED: general transcription factor IIF subunit 2 [Cucumis sativus]	[more]
gi\|296086049\|emb\|CBI31490.3\|	3.4e-52	69.50	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003196	TFIIF_beta
IPR011991	Winged helix-turn-helix DNA-binding domain

Vocabulary: **Cellular Component**
Term	Definition
GO:0005674	transcription factor TFIIF complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006366	transcription from RNA polymerase II promoter
GO:0006367	transcription initiation from RNA polymerase II promoter

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005674	transcription factor TFIIF complex
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004738	Cla004738.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003196	Transcription initiation factor IIF, beta subunit	PANTHER	PTHR10445	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	coord: 1..138 score: 1.5
IPR003196	Transcription initiation factor IIF, beta subunit	PFAM	PF02270	TFIIF_beta	coord: 7..133 score: 8.2
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 69..134 score: 8.8
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 69..134 score: 5.17
None	No IPR available	PANTHER	PTHR10445:SF2	TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT	coord: 1..138 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004738	Cla97C09G181980	Watermelon (97103) v2	wmwmbB042
Cla004738	Csa5G492360	Cucumber (Chinese Long) v2	cuwmB363
Cla004738	MELO3C002888	Melon (DHL92) v3.5.1	mewmB003
Cla004738	CSPI05G16780	Wild cucumber (PI 183967)	cpiwmB369
Cla004738	Lsi02G017100	Bottle gourd (USVL1VR-Ls)	lsiwmB170
Cla004738	MELO3C002888.2	Melon (DHL92) v3.6.1	medwmB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004738	Wax gourd	wgowmB120
Cla004738	Cucumber (Gy14) v1	cgywmB507
Cla004738	Cucurbita maxima (Rimu)	cmawmB252
Cla004738	Cucurbita maxima (Rimu)	cmawmB650
Cla004738	Cucurbita maxima (Rimu)	cmawmB652
Cla004738	Cucurbita moschata (Rifu)	cmowmB243
Cla004738	Cucurbita moschata (Rifu)	cmowmB646
Cla004738	Watermelon (Charleston Gray)	wcgwmB008
Cla004738	Cucurbita pepo (Zucchini)	cpewmB166
Cla004738	Cucurbita pepo (Zucchini)	cpewmB379
Cla004738	Cucurbita pepo (Zucchini)	cpewmB381
Cla004738	Cucumber (Gy14) v2	cgybwmB339
Cla004738	Silver-seed gourd	carwmB0246
Cla004738	Silver-seed gourd	carwmB0679
Cla004738	Cucumber (Chinese Long) v3	cucwmB387