Cla004381 (gene) Watermelon (97103) v1

NameCla004381
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCalcium-binding EF-hand family protein-like (AHRD V1 **** Q6ZFI7_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type
LocationChr9 : 26999615 .. 27000028 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGGAAATATTGGATAGTGCCACCATCGTCAACTTCGTCGAAGACGATATAGCTTTTGGTGCATACATGAGAGACCGTTTTGCTCACCTTGACACCAACCATGATGGTCTTCTTTCCTACAGTGAGATGTTGGAGGAGTTACACACCCTCAGGGTCTTCGAGACCCATTTCGGAATCGATGTGAAGCCTGATCCGGAGGAGCTTTCTACAGTTTATAGTTCTTTGTTTTTACAGTTTGATCGTGACTCGAGTGGAACAGTTGATCTGGATGAGTTTATGGCTGAGAGCAGAAGGATGATGTTAGCTATGGCTAATGGGATGGGATTCTTACCTGTTCAGATGGTGTTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAACAGCAATAATAGCCGCTTGA

mRNA sequence

ATGAGTGTGGAAATATTGGATAGTGCCACCATCGTCAACTTCGTCGAAGACGATATAGCTTTTGGTGCATACATGAGAGACCGTTTTGCTCACCTTGACACCAACCATGATGGTCTTCTTTCCTACAGTGAGATGTTGGAGGAGTTACACACCCTCAGGGTCTTCGAGACCCATTTCGGAATCGATGTGAAGCCTGATCCGGAGGAGCTTTCTACAGTTTATAGTTCTTTGTTTTTACAGTTTGATCGTGACTCGAGTGGAACAGTTGATCTGGATGAGTTTATGGCTGAGAGCAGAAGGATGATGTTAGCTATGGCTAATGGGATGGGATTCTTACCTGTTCAGATGGTGTTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAACAGCAATAATAGCCGCTTGA

Coding sequence (CDS)

ATGAGTGTGGAAATATTGGATAGTGCCACCATCGTCAACTTCGTCGAAGACGATATAGCTTTTGGTGCATACATGAGAGACCGTTTTGCTCACCTTGACACCAACCATGATGGTCTTCTTTCCTACAGTGAGATGTTGGAGGAGTTACACACCCTCAGGGTCTTCGAGACCCATTTCGGAATCGATGTGAAGCCTGATCCGGAGGAGCTTTCTACAGTTTATAGTTCTTTGTTTTTACAGTTTGATCGTGACTCGAGTGGAACAGTTGATCTGGATGAGTTTATGGCTGAGAGCAGAAGGATGATGTTAGCTATGGCTAATGGGATGGGATTCTTACCTGTTCAGATGGTGTTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAACAGCAATAATAGCCGCTTGA

Protein sequence

MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFGIDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEEGSFLMKAVERETAIIAA
BLAST of Cla004381 vs. TrEMBL
Match: A0A0A0KHT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-64
Identity = 127/137 (92.70%), Postives = 134/137 (97.81%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVEILDSATIVNFVEDD+AFGA++RDRFAHLDTN DGLLSYSEMLEELHTLRVFETHFG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
           IDVKPDP+ELS+VYSSLFLQFDRDSSGTVDLDEF AE++RMMLAMANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

BLAST of Cla004381 vs. TrEMBL
Match: A0A061DTS7_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.3e-52
Identity = 105/137 (76.64%), Postives = 124/137 (90.51%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVE+LDSATIVNFVED+ AF  ++ DRFAHLDT+HDGLLSY+E+L+EL +LRVFETHFG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
           IDVK DP+EL+ VY+SLF+QFD DS+GTVDL EF AES+RMMLAMANGMGFLPVQM+LEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
           GSFL KAV+RE+  +AA
Sbjct: 121 GSFLKKAVDRESTKLAA 137

BLAST of Cla004381 vs. TrEMBL
Match: V4U9W3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-51
Identity = 103/137 (75.18%), Postives = 125/137 (91.24%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVE+LDSATIV+FVED+ AF   +R+RFAHLDT+HDGLLSY+EM++EL +LRVFETHFG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
           ID KPDPEEL++VY+SLF+QFD DS+GTVDL+EF AE+++MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
            SFLMKAVE+E+   AA
Sbjct: 121 DSFLMKAVEKESTAKAA 137

BLAST of Cla004381 vs. TrEMBL
Match: A0A0A0K3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037625 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.3e-51
Identity = 106/137 (77.37%), Postives = 119/137 (86.86%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVEILD  TIVNFVED+ AF AY+R +FAHLDT+HDGLLSY+EMLEEL +LRVF+  FG
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
            D K  P+ELS+VYSSLFLQFDRDS G VDLD +  E +RMMLAMANG+GFLPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
           GSFLMKAVERETAI+AA
Sbjct: 121 GSFLMKAVERETAIMAA 137

BLAST of Cla004381 vs. TrEMBL
Match: V4W4I0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018354mg PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.8e-50
Identity = 101/137 (73.72%), Postives = 122/137 (89.05%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVE+LD ATIV+FVED+ AF   +R+RFAHLDT+HDGLLSY+EM++EL +LRVFETHFG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
           ID KPDPEEL++VY+SLF+QFD DS+GTVDL+EF  E+++MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKEETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
            SFLMKAVE+E    AA
Sbjct: 121 DSFLMKAVEKEFTAKAA 137

BLAST of Cla004381 vs. NCBI nr
Match: gi|778716395|ref|XP_011657544.1| (PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.7e-64
Identity = 127/137 (92.70%), Postives = 134/137 (97.81%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVEILDSATIVNFVEDD+AFGA++RDRFAHLDTN DGLLSYSEMLEELHTLRVFETHFG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
           IDVKPDP+ELS+VYSSLFLQFDRDSSGTVDLDEF AE++RMMLAMANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

BLAST of Cla004381 vs. NCBI nr
Match: gi|659097011|ref|XP_008449396.1| (PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 1.7e-64
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVEILDSATIVNFVEDD+AFGA++RDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
           IDVKPDPEELS+VYSSLFLQFD DSSGTVDLDEF AE++RMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

BLAST of Cla004381 vs. NCBI nr
Match: gi|659110959|ref|XP_008455501.1| (PREDICTED: uncharacterized protein LOC103495653 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 4.6e-54
Identity = 111/137 (81.02%), Postives = 121/137 (88.32%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVEILDS TIVNFVED+ AF AY+RDRF HLDTNHDGLLSY+EMLEEL +LRVFE  FG
Sbjct: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
            D K DP+ELS+VYSSLFLQFDRDS G VDLD +  E +RMMLAMANG+GFLPVQMVLEE
Sbjct: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
           GSFLMKAVERETAI+AA
Sbjct: 121 GSFLMKAVERETAIMAA 137

BLAST of Cla004381 vs. NCBI nr
Match: gi|590711914|ref|XP_007049241.1| (Calcium-binding EF-hand family protein [Theobroma cacao])

HSP 1 Score: 213.0 bits (541), Expect = 3.3e-52
Identity = 105/137 (76.64%), Postives = 124/137 (90.51%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVE+LDSATIVNFVED+ AF  ++ DRFAHLDT+HDGLLSY+E+L+EL +LRVFETHFG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
           IDVK DP+EL+ VY+SLF+QFD DS+GTVDL EF AES+RMMLAMANGMGFLPVQM+LEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
           GSFL KAV+RE+  +AA
Sbjct: 121 GSFLKKAVDRESTKLAA 137

BLAST of Cla004381 vs. NCBI nr
Match: gi|567910763|ref|XP_006447695.1| (hypothetical protein CICLE_v10018069mg [Citrus clementina])

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51
Identity = 103/137 (75.18%), Postives = 125/137 (91.24%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDDIAFGAYMRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60
           MSVE+LDSATIV+FVED+ AF   +R+RFAHLDT+HDGLLSY+EM++EL +LRVFETHFG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDVKPDPEELSTVYSSLFLQFDRDSSGTVDLDEFMAESRRMMLAMANGMGFLPVQMVLEE 120
           ID KPDPEEL++VY+SLF+QFD DS+GTVDL+EF AE+++MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIIAA 138
            SFLMKAVE+E+   AA
Sbjct: 121 DSFLMKAVEKESTAKAA 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KHT7_CUCSA1.2e-6492.70Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1[more]
A0A061DTS7_THECC2.3e-5276.64Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=... [more]
V4U9W3_9ROSI1.1e-5175.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1[more]
A0A0A0K3B2_CUCSA4.3e-5177.37Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037625 PE=4 SV=1[more]
V4W4I0_9ROSI2.8e-5073.72Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018354mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778716395|ref|XP_011657544.1|1.7e-6492.70PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus][more]
gi|659097011|ref|XP_008449396.1|1.7e-6492.70PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo][more]
gi|659110959|ref|XP_008455501.1|4.6e-5481.02PREDICTED: uncharacterized protein LOC103495653 [Cucumis melo][more]
gi|590711914|ref|XP_007049241.1|3.3e-5276.64Calcium-binding EF-hand family protein [Theobroma cacao][more]
gi|567910763|ref|XP_006447695.1|1.6e-5175.18hypothetical protein CICLE_v10018069mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004381Cla004381.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 25..96
score: 8.8
IPR002048EF-hand domainSMARTSM00054efh_1coord: 73..101
score: 3.5coord: 24..52
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 20..55
score: 8.99coord: 69..104
score: 8
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 25..103
score: 2.1
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 25..105
score: 6.72
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 82..94
score: -coord: 33..45
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..135
score: 8.4
NoneNo IPR availablePANTHERPTHR10891:SF615SUBFAMILY NOT NAMEDcoord: 1..135
score: 8.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla004381Cla97C09G176340Watermelon (97103) v2wmwmbB046
Cla004381Bhi05G000604Wax gourdwgowmB246
The following gene(s) are paralogous to this gene:

None