Cla003799 (gene) Watermelon (97103) v1

Overview
NameCla003799
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRossmann-fold NAD(P)-binding domain-containing protein (AHRD V1 **-* F4I227_ARATH); contains Interpro domain(s) IPR002198 Short-chain dehydrogenase/reductase SDR
LocationChr8 : 11155941 .. 11156123 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCCAACCACATTCTCCTCTTGAGCTTGAGCCATGGAATGACTTGAACGGCAAAGTGGCGATGGTGATCGAAGCCTCATCAGGGATAAGTCGTGAGATCTGTCTTAATCTTGCCAAAGCTGGATGTAAAATTATCGCCGTTGCACGTCGTATGGATAGACTCCAATCTCTTGCGTGA

mRNA sequence

ATGGCCATCCAACCACATTCTCCTCTTGAGCTTGAGCCATGGAATGACTTGAACGGCAAAGTGGCGATGGTGATCGAAGCCTCATCAGGGATAAGTCGTGAGATCTGTCTTAATCTTGCCAAAGCTGGATGTAAAATTATCGCCGTTGCACGTCGTATGGATAGACTCCAATCTCTTGCGTGA

Coding sequence (CDS)

ATGGCCATCCAACCACATTCTCCTCTTGAGCTTGAGCCATGGAATGACTTGAACGGCAAAGTGGCGATGGTGATCGAAGCCTCATCAGGGATAAGTCGTGAGATCTGTCTTAATCTTGCCAAAGCTGGATGTAAAATTATCGCCGTTGCACGTCGTATGGATAGACTCCAATCTCTTGCGTGA

Protein sequence

MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLA
Homology
[Close]
BLAST of Cla003799 vs. TrEMBL
Match: A0A0A0L258_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427280 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  ASSG+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of Cla003799 vs. TrEMBL
Match: A0A0A0L3H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G429300 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.2e-17
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  AS+G+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQEHSPLKLEPWNDLNGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of Cla003799 vs. TrEMBL
Match: A0A0A0LCR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824880 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-15
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MA+Q  SP +LEPWNDLNGKV MV  ASSG+ RE CL+LA+AGCKI+AVARR DRLQSL
Sbjct: 1  MALQRDSP-QLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIVAVARRTDRLQSL 58

[Close]
BLAST of Cla003799 vs. TrEMBL
Match: A0A0A0L3H5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427270 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.1e-14
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          M  +  SP  LEPWN L+GKV MV  ASSG+ RE CL+LAKAGCK+IA ARR+DRLQSL
Sbjct: 1  MGERQSSPTHLEPWNSLHGKVVMVTGASSGLGREFCLDLAKAGCKVIAAARRIDRLQSL 59

[Close]
BLAST of Cla003799 vs. TrEMBL
Match: A5AS66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036158 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.6e-12
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1 

Query: 11 LEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          LEPW DL GKV MV  ASSG+  E CLNLAKAGCKI+A ARR+DRL+SL
Sbjct: 9  LEPWQDLEGKVVMVTGASSGLGSEFCLNLAKAGCKIVAAARRVDRLKSL 57

[Close]
BLAST of Cla003799 vs. NCBI nr
Match: gi|778697737|ref|XP_011654387.1| (PREDICTED: L-xylulose reductase-like [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  ASSG+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of Cla003799 vs. NCBI nr
Match: gi|700199534|gb|KGN54692.1| (hypothetical protein Csa_4G427280 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  ASSG+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of Cla003799 vs. NCBI nr
Match: gi|778697741|ref|XP_011654389.1| (PREDICTED: dehydrogenase/reductase SDR family protein 7-like [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 7.4e-17
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  AS+G+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQEHSPLKLEPWNDLNGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of Cla003799 vs. NCBI nr
Match: gi|700199538|gb|KGN54696.1| (hypothetical protein Csa_4G429300 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 7.4e-17
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  AS+G+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQEHSPLKLEPWNDLNGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of Cla003799 vs. NCBI nr
Match: gi|659111577|ref|XP_008455802.1| (PREDICTED: probable L-xylulose reductase [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-16
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDL GKV MV  AS+G+ RE CL+LA+AGCKIIA ARR +RLQSL
Sbjct: 1  MAIQQHSPLKLEPWNDLKGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTNRLQSL 59

The following BLAST results are available for this feature:
BLAST of Cla003799 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L258_CUCSA2.3e-1777.97Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427280 PE=3 SV=1[more]
A0A0A0L3H9_CUCSA5.2e-1776.27Uncharacterized protein OS=Cucumis sativus GN=Csa_4G429300 PE=4 SV=1[more]
A0A0A0LCR1_CUCSA2.8e-1574.58Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824880 PE=3 SV=1[more]
A0A0A0L3H5_CUCSA9.1e-1467.80Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427270 PE=3 SV=1[more]
A5AS66_VITVI8.6e-1273.47Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036158 PE=3 SV=1[more]
BLAST of Cla003799 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697737|ref|XP_011654387.1|3.3e-1777.97PREDICTED: L-xylulose reductase-like [Cucumis sativus][more]
gi|700199534|gb|KGN54692.1|3.3e-1777.97hypothetical protein Csa_4G427280 [Cucumis sativus][more]
gi|778697741|ref|XP_011654389.1|7.4e-1776.27PREDICTED: dehydrogenase/reductase SDR family protein 7-like [Cucumis sativus][more]
gi|700199538|gb|KGN54696.1|7.4e-1776.27hypothetical protein Csa_4G429300 [Cucumis sativus][more]
gi|659111577|ref|XP_008455802.1|2.8e-1674.58PREDICTED: probable L-xylulose reductase [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003799Cla003799.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 20..59
score: 1.
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 14..60
score: 1.2
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 13..60
score: 5.23

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003799ClCG08G002680Watermelon (Charleston Gray)wcgwmB403
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003799Melon (DHL92) v3.6.1medwmB299
Cla003799Cucumber (Chinese Long) v3cucwmB490
Cla003799Cucumber (Chinese Long) v3cucwmB501
Cla003799Watermelon (97103) v2wmwmbB103
Cla003799Wax gourdwgowmB306
Cla003799Cucumber (Gy14) v1cgywmB656
Cla003799Wild cucumber (PI 183967)cpiwmB479
Cla003799Wild cucumber (PI 183967)cpiwmB490
Cla003799Melon (DHL92) v3.5.1mewmB312
Cla003799Watermelon (Charleston Gray)wcgwmB410
Cla003799Cucumber (Chinese Long) v2cuwmB462
Cla003799Cucumber (Chinese Long) v2cuwmB475
Cla003799Bottle gourd (USVL1VR-Ls)lsiwmB470
Cla003799Cucumber (Gy14) v2cgybwmB434
Cla003799Cucumber (Gy14) v2cgybwmB446