ClCG08G002680 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G002680
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionNAD(P)-binding Rossmann-fold superfamily protein LENGTH=279
LocationCG_Chr08 : 5931151 .. 5931441 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCCAACCACATTCTCCTCTTGAGCTTGAGCCATGGAATGACTTGAACGGCAAAGTGGCAATGGTGATCGAAGCCTCATCAGGGATAAGTCGTGAGATCTGTCTTAATCTTGCCAAAGCTGGATGTAAAATTATCGCCGTTGCACGTCGTATGGATAGACTCCAATCTCTTGCGTGACGAAGTTAATCGACATGATTTCTCAGCTTCCTCATCGGTCTCTTCCAGCTCTCGAGCCTCTTTCACAATGGTGATGGAGAGTCGCTGAGATGTGGCTGTGGAACTTGA

mRNA sequence

ATGGCCATCCAACCACATTCTCCTCTTGAGCTTGAGCCATGGAATGACTTGAACGGCAAAGTGGCAATGGTGATCGAAGCCTCATCAGGGATAAGTCGTGAGATCTGTCTTAATCTTGCCAAAGCTGGATGTAAAATTATCGCCGTTGCACGTCGTATGGATAGACTCCAATCTCTTGCCTTCCTCATCGGTCTCTTCCAGCTCTCGAGCCTCTTTCACAATGGTGATGGAGAGTCGCTGAGATGTGGCTGTGGAACTTGA

Coding sequence (CDS)

ATGGCCATCCAACCACATTCTCCTCTTGAGCTTGAGCCATGGAATGACTTGAACGGCAAAGTGGCAATGGTGATCGAAGCCTCATCAGGGATAAGTCGTGAGATCTGTCTTAATCTTGCCAAAGCTGGATGTAAAATTATCGCCGTTGCACGTCGTATGGATAGACTCCAATCTCTTGCCTTCCTCATCGGTCTCTTCCAGCTCTCGAGCCTCTTTCACAATGGTGATGGAGAGTCGCTGAGATGTGGCTGTGGAACTTGA

Protein sequence

MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLAFLIGLFQLSSLFHNGDGESLRCGCGT
Homology
[Close]
BLAST of ClCG08G002680 vs. TrEMBL
Match: A0A0A0L258_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427280 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  ASSG+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of ClCG08G002680 vs. TrEMBL
Match: A0A0A0L3H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G429300 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.7e-17
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLA 60
          MAIQ HSPL+LEPWNDLNGKV MV  AS+G+ RE CL+LA+AGCKIIA ARR  RLQSL 
Sbjct: 1  MAIQEHSPLKLEPWNDLNGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTSRLQSLC 60

Query: 61 FLIGLFQLSSL 72
            I     S L
Sbjct: 61 DEINELDFSVL 71

[Close]
BLAST of ClCG08G002680 vs. TrEMBL
Match: A0A0A0LCR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824880 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-15
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MA+Q  SP +LEPWNDLNGKV MV  ASSG+ RE CL+LA+AGCKI+AVARR DRLQSL
Sbjct: 1  MALQRDSP-QLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIVAVARRTDRLQSL 58

[Close]
BLAST of ClCG08G002680 vs. TrEMBL
Match: A0A0A0L3H5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427270 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-14
Identity = 44/70 (62.86%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLA 60
          M  +  SP  LEPWN L+GKV MV  ASSG+ RE CL+LAKAGCK+IA ARR+DRLQSL 
Sbjct: 1  MGERQSSPTHLEPWNSLHGKVVMVTGASSGLGREFCLDLAKAGCKVIAAARRIDRLQSLC 60

Query: 61 FLIGLFQLSS 71
            I    LSS
Sbjct: 61 DEINRLNLSS 70

[Close]
BLAST of ClCG08G002680 vs. TrEMBL
Match: D7KUN9_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_675111 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-13
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 10 ELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLAFLIGLFQLS 69
          +LEPW +LNGKV +V  ASSGI REIC++L KAGCKIIA ARR+DRL SL F I  F L+
Sbjct: 20 QLEPWCELNGKVVLVTGASSGIGREICIDLGKAGCKIIAAARRVDRLDSLCFEINSFGLT 79

Query: 70 SL 72
           +
Sbjct: 80 GI 81

[Close]
BLAST of ClCG08G002680 vs. TAIR10
Match: AT3G46170.1 (AT3G46170.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-14
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 10 ELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          +LEPW +L  KV +V  ASSGI REICL+L KAGCKIIAVARR+DRL SL
Sbjct: 19 QLEPWCELKDKVVLVTGASSGIGREICLDLGKAGCKIIAVARRVDRLNSL 68

[Close]
BLAST of ClCG08G002680 vs. TAIR10
Match: AT3G55310.1 (AT3G55310.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 6.9e-14
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1 

Query: 10 ELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLAFLIGLFQLS 69
          +LEPW +L  KV +V  ASSGI REICL+LAKAGC++IA ARR+DRL SL   I  F  +
Sbjct: 10 QLEPWCELKDKVVLVTGASSGIGREICLDLAKAGCQVIAAARRVDRLNSLCSEINSFSST 69

Query: 70 SL 72
           +
Sbjct: 70 GI 71

[Close]
BLAST of ClCG08G002680 vs. TAIR10
Match: AT1G63380.1 (AT1G63380.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-14
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 10 ELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLAFLIGLF 67
          +LEPW +L  KV +V  ASSGI REICL+L KAGCKI+A ARR+DRL SL   I  F
Sbjct: 10 QLEPWCELKDKVVLVTGASSGIGREICLDLCKAGCKIVAAARRVDRLNSLCSEINSF 66

[Close]
BLAST of ClCG08G002680 vs. TAIR10
Match: AT1G62610.4 (AT1G62610.4 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-14
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 10 ELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLAFLIGLF 67
          +LEPW +L  KV +V  ASSGI REICL+L KAGCKI+A ARR+DRL SL   I  F
Sbjct: 12 QLEPWCELKDKVVLVTGASSGIGREICLDLCKAGCKIVAAARRVDRLNSLCSEINSF 68

[Close]
BLAST of ClCG08G002680 vs. TAIR10
Match: AT3G55290.1 (AT3G55290.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1 

Query: 11 LEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLAFLIGLFQLSS 70
          LEPW +L  KV +V  ASSGI REICL+LAKAGC++IA ARR+DRL SL   I  F  + 
Sbjct: 12 LEPWCELKDKVVLVTGASSGIGREICLDLAKAGCQVIAAARRVDRLNSLCSEINSFSSTG 71

Query: 71 L 72
          +
Sbjct: 72 I 72

[Close]
BLAST of ClCG08G002680 vs. NCBI nr
Match: gi|778697737|ref|XP_011654387.1| (PREDICTED: L-xylulose reductase-like [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  ASSG+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of ClCG08G002680 vs. NCBI nr
Match: gi|700199534|gb|KGN54692.1| (hypothetical protein Csa_4G427280 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSL 60
          MAIQ HSPL+LEPWNDLNGKV MV  ASSG+ RE CL+LA+AGCKIIA ARR  RLQSL
Sbjct: 1  MAIQQHSPLKLEPWNDLNGKVVMVTGASSGLGREFCLDLARAGCKIIAAARRTSRLQSL 59

[Close]
BLAST of ClCG08G002680 vs. NCBI nr
Match: gi|778697741|ref|XP_011654389.1| (PREDICTED: dehydrogenase/reductase SDR family protein 7-like [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 8.2e-17
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLA 60
          MAIQ HSPL+LEPWNDLNGKV MV  AS+G+ RE CL+LA+AGCKIIA ARR  RLQSL 
Sbjct: 1  MAIQEHSPLKLEPWNDLNGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTSRLQSLC 60

Query: 61 FLIGLFQLSSL 72
            I     S L
Sbjct: 61 DEINELDFSVL 71

[Close]
BLAST of ClCG08G002680 vs. NCBI nr
Match: gi|700199538|gb|KGN54696.1| (hypothetical protein Csa_4G429300 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 8.2e-17
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLA 60
          MAIQ HSPL+LEPWNDLNGKV MV  AS+G+ RE CL+LA+AGCKIIA ARR  RLQSL 
Sbjct: 1  MAIQEHSPLKLEPWNDLNGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTSRLQSLC 60

Query: 61 FLIGLFQLSSL 72
            I     S L
Sbjct: 61 DEINELDFSVL 71

[Close]
BLAST of ClCG08G002680 vs. NCBI nr
Match: gi|659111577|ref|XP_008455802.1| (PREDICTED: probable L-xylulose reductase [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-16
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 1  MAIQPHSPLELEPWNDLNGKVAMVIEASSGISREICLNLAKAGCKIIAVARRMDRLQSLA 60
          MAIQ HSPL+LEPWNDL GKV MV  AS+G+ RE CL+LA+AGCKIIA ARR +RLQSL 
Sbjct: 1  MAIQQHSPLKLEPWNDLKGKVVMVTGASAGLGREFCLDLARAGCKIIAAARRTNRLQSLC 60

Query: 61 FLIGLFQLSSL 72
            I     S L
Sbjct: 61 DEINQLDFSIL 71

The following BLAST results are available for this feature:
BLAST of ClCG08G002680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L258_CUCSA3.3e-1777.97Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427280 PE=3 SV=1[more]
A0A0A0L3H9_CUCSA5.7e-1767.61Uncharacterized protein OS=Cucumis sativus GN=Csa_4G429300 PE=4 SV=1[more]
A0A0A0LCR1_CUCSA4.1e-1574.58Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824880 PE=3 SV=1[more]
A0A0A0L3H5_CUCSA1.5e-1462.86Uncharacterized protein OS=Cucumis sativus GN=Csa_4G427270 PE=3 SV=1[more]
D7KUN9_ARALL2.2e-1364.52Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_675111 PE=3 ... [more]
BLAST of ClCG08G002680 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G46170.15.3e-1472.00 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT3G55310.16.9e-1458.06 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT1G63380.19.0e-1463.16 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT1G62610.49.0e-1463.16 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT3G55290.11.2e-1359.02 NAD(P)-binding Rossmann-fold superfamily protein[more]
BLAST of ClCG08G002680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697737|ref|XP_011654387.1|4.8e-1777.97PREDICTED: L-xylulose reductase-like [Cucumis sativus][more]
gi|700199534|gb|KGN54692.1|4.8e-1777.97hypothetical protein Csa_4G427280 [Cucumis sativus][more]
gi|778697741|ref|XP_011654389.1|8.2e-1767.61PREDICTED: dehydrogenase/reductase SDR family protein 7-like [Cucumis sativus][more]
gi|700199538|gb|KGN54696.1|8.2e-1767.61hypothetical protein Csa_4G429300 [Cucumis sativus][more]
gi|659111577|ref|XP_008455802.1|2.4e-1666.20PREDICTED: probable L-xylulose reductase [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G002680.1ClCG08G002680.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 20..60
score: 2.
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 14..75
score: 6.7
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 14..63
score: 4.65

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G002680Cla003799Watermelon (97103) v1wcgwmB403
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G002680Cucumber (Chinese Long) v3cucwcgB518
ClCG08G002680Watermelon (97103) v2wcgwmbB336
ClCG08G002680Wax gourdwcgwgoB633
ClCG08G002680Cucumber (Gy14) v1cgywcgB627
ClCG08G002680Wild cucumber (PI 183967)cpiwcgB526
ClCG08G002680Cucumber (Chinese Long) v2cuwcgB500
ClCG08G002680Watermelon (97103) v1wcgwmB410
ClCG08G002680Bottle gourd (USVL1VR-Ls)lsiwcgB440
ClCG08G002680Cucumber (Gy14) v2cgybwcgB457