Cla003790 (gene) Watermelon (97103) v1

Overview
NameCla003790
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSelf-incompatibility protein (Fragment) (AHRD V1 *-*- C8C1F8_PLACA); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
LocationChr8 : 10993741 .. 10994226 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCACAGGGACTTATGCTTTCAGTAACTCTCTTGTTTGTCGCCTCCTTGGATGTATCGATTGCCTTGAAGACTAGCAAGAAAAAGCAAGAAACAAACTCCGAATCACCAAAACTGCAAGGAGAACCTCTCGTCGCCTTTCGTAAGTTTAATGTTCAGATTCACAATGAATTGCATATGTACTTGTTGGACAGCCATTGTTACTCAAAAGACGACGATTTGGGAGTGCATGTGTTGTACCCAAATGATCGACAAAGTTGGTCGTTCAAAGGTAATTGGTTGGGAACGACAATGTTCCATTGCAAATTGGAGTGGGAAAATGGATCTTTGGAATTTGATGCTTTTTCTAGTAATGTTGAGTTTTTGACGAATTTTTGTGGCAATGCATCATGTTGTTGGAGTGTGAGACAAGATGGGATTTATTTGACCAATCGAAATGGTCAAGTTGTTTTCAAACAACATTGGGAAATGCTTAGAACATGA

mRNA sequence

ATGCCATCACAGGGACTTATGCTTTCAGTAACTCTCTTGTTTGTCGCCTCCTTGGATGTATCGATTGCCTTGAAGACTAGCAAGAAAAAGCAAGAAACAAACTCCGAATCACCAAAACTGCAAGGAGAACCTCTCGTCGCCTTTCGTAAGTTTAATGTTCAGATTCACAATGAATTGCATATGTACTTGTTGGACAGCCATTGTTACTCAAAAGACGACGATTTGGGAGTGCATGTGTTGTACCCAAATGATCGACAAAGTTGGTCGTTCAAAGGTAATTGGTTGGGAACGACAATGTTCCATTGCAAATTGGAGTGGGAAAATGGATCTTTGGAATTTGATGCTTTTTCTAGTAATGTTGAGTTTTTGACGAATTTTTGTGGCAATGCATCATGTTGTTGGAGTGTGAGACAAGATGGGATTTATTTGACCAATCGAAATGGTCAAGTTGTTTTCAAACAACATTGGGAAATGCTTAGAACATGA

Coding sequence (CDS)

ATGCCATCACAGGGACTTATGCTTTCAGTAACTCTCTTGTTTGTCGCCTCCTTGGATGTATCGATTGCCTTGAAGACTAGCAAGAAAAAGCAAGAAACAAACTCCGAATCACCAAAACTGCAAGGAGAACCTCTCGTCGCCTTTCGTAAGTTTAATGTTCAGATTCACAATGAATTGCATATGTACTTGTTGGACAGCCATTGTTACTCAAAAGACGACGATTTGGGAGTGCATGTGTTGTACCCAAATGATCGACAAAGTTGGTCGTTCAAAGGTAATTGGTTGGGAACGACAATGTTCCATTGCAAATTGGAGTGGGAAAATGGATCTTTGGAATTTGATGCTTTTTCTAGTAATGTTGAGTTTTTGACGAATTTTTGTGGCAATGCATCATGTTGTTGGAGTGTGAGACAAGATGGGATTTATTTGACCAATCGAAATGGTCAAGTTGTTTTCAAACAACATTGGGAAATGCTTAGAACATGA

Protein sequence

MPSQGLMLSVTLLFVASLDVSIALKTSKKKQETNSESPKLQGEPLVAFRKFNVQIHNELHMYLLDSHCYSKDDDLGVHVLYPNDRQSWSFKGNWLGTTMFHCKLEWENGSLEFDAFSSNVEFLTNFCGNASCCWSVRQDGIYLTNRNGQVVFKQHWEMLRT
Homology
[Close]
BLAST of Cla003790 vs. TrEMBL
Match: A0A0A0KL79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016040 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.8e-46
Identity = 80/136 (58.82%), Postives = 106/136 (77.94%), Query Frame = 1 

Query: 27  SKKKQETNSESPKLQ--GEPLVAFRKFNVQIHNELHMYLLDSHCYSKDDDLGVHVLYPND 86
           +KKK +  S +PKL     P+V F +F V+IHN+L M++LDSHCYSKDDDLG+H+L+P++
Sbjct: 2   AKKKAKNKSPTPKLSVPNNPVVMFERFTVEIHNDLRMFILDSHCYSKDDDLGLHILFPDE 61

Query: 87  RQSWSFKGNWLGTTMFHCKLEWENGSLEFDAFSSNVEFLTNFCGNASCCWSVRQDGIYLT 146
           +Q WSFKGNW+ TT FHC+LEWE G LEFD+F S  +F+TN+CGN +C WS RQDG+YL 
Sbjct: 62  KQDWSFKGNWIATTSFHCRLEWEVGYLEFDSFKSAPDFVTNYCGNQTCIWSARQDGVYLN 121

Query: 147 NRNGQVVFKQHWEMLR 161
           N  G+ VF  +WEM+R
Sbjct: 122 NAAGEQVFYNYWEMIR 137

[Close]
BLAST of Cla003790 vs. TrEMBL
Match: A0A0A0KSN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G538550 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-37
Identity = 74/154 (48.05%), Postives = 104/154 (67.53%), Query Frame = 1 

Query: 6   LMLSVTLLFVASLDVSIALKTSKKKQETNSESPKLQGEPLVAFRKFNVQIHNELHMYLLD 65
           L+L + L  +   D+S+A + S   Q+++          ++    + ++IHN+L MYLLD
Sbjct: 6   LVLLIFLFLIVLFDMSMA-RFSFAPQKSS----------IIQLHHYQIEIHNDLEMYLLD 65

Query: 66  SHCYSKDDDLGVHVLYPNDRQSWSFKGNWLGTTMFHCKLEWENGSLEFDAFSSNVEFLTN 125
           SHC+SKD+DLG+H+L+P + Q WSF+ N   TT F C LEWENG LEFD+F +N  FL N
Sbjct: 66  SHCFSKDNDLGLHILFPGELQDWSFQDNDFETTKFRCILEWENGLLEFDSFKTNHNFLNN 125

Query: 126 FCGNASCCWSVRQDGIYLTNRNGQVVFKQHWEML 160
           FCGN +C WS RQDG+YLTN  G+ VF+ +W+ML
Sbjct: 126 FCGNLTCSWSARQDGVYLTNVKGEYVFQDYWDML 148

[Close]
BLAST of Cla003790 vs. TrEMBL
Match: A0A0A0KIQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G017790 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.2e-33
Identity = 73/132 (55.30%), Postives = 97/132 (73.48%), Query Frame = 1 

Query: 1   MPSQGLM-LSVTLLFVASLDVSIALKTSKKKQETNSESPKLQ--GEPLVAFRKFNVQIHN 60
           M  Q LM L + LL + S +VS+A    KKK ++ +E P L     P+V+F KF V+IHN
Sbjct: 1   MAFQRLMPLLLVLLLLTSFNVSMA---KKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHN 60

Query: 61  ELHMYLLDSHCYSKDDDLGVHVLYPNDRQSWSFKGNWLGTTMFHCKLEWENGSLEFDAFS 120
           +L+MYLLDS CYSKDD+ G+HVL+P+++Q+WSFKGNW  TT FHC+LEWE G LEFD+F 
Sbjct: 61  DLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEIGYLEFDSFK 120

Query: 121 SNVEFLTNFCGN 130
           S+  F+T+FC N
Sbjct: 121 SDPAFVTDFCCN 129

[Close]
BLAST of Cla003790 vs. TrEMBL
Match: M5VMC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024473mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 47/111 (42.34%), Postives = 60/111 (54.05%), Query Frame = 1 

Query: 48  FRKFNVQIHNELHMYLLDSHCYSKDDDLGVHVLYPNDRQSWSFKGNWLGTTMFHCKLEWE 107
           F K+ V I N L    L +HC SKDDDLGVH L  +   SW F+ N+   T++ C L W 
Sbjct: 29  FNKYRVHIINGLTNETLTAHCKSKDDDLGVHELAVDQEFSWEFRINFFDRTLYFCNLVWN 88

Query: 108 NGSLEFDAFSSNVEFLTNFCGNASCCWSVRQDGIYLTN-RNGQVVFKQHWE 158
            G   FDAF  + + L N C ++ C W  R DG+YL N  + Q   K  WE
Sbjct: 89  GGHKTFDAFLVDEKALLNSCSSSDCMWRARDDGVYLFNYPHKQYRLKYQWE 139

[Close]
BLAST of Cla003790 vs. TrEMBL
Match: B9SUI5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0573340 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 1 

Query: 41  QGEPLVAFRKFNVQIHNELHMYLLDSHCYSKDDDLGVHVLYPNDRQSWSFKGNWLGTTMF 100
           + E    F K++V + N L  +LL +HC S +DDLGVH L P   Q W+F+ N    T F
Sbjct: 22  RSEAFEIFPKYHVHVVNGLKKHLLQTHCVSVNDDLGVHDLAPRQEQVWAFRINISFNTRF 81

Query: 101 HCKLEWENGSLEFDAF---SSNVEFLTNFCGNASCCWSVRQDGIYLTN 146
            C L W+ G   FDAF      V F+   C N +C W  ++DGIYL +
Sbjct: 82  ECTLSWKGGKKRFDAFYPWFDGVNFMREHCVNYNCYWRAQEDGIYLVS 129

[Close]
BLAST of Cla003790 vs. NCBI nr
Match: gi|659105271|ref|XP_008453055.1| (PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 8.9e-57
Identity = 102/133 (76.69%), Postives = 114/133 (85.71%), Query Frame = 1 

Query: 29  KKQETNSESPKLQGEPLVAFRKFNVQIHNELHMYLLDSHCYSKDDDLGVHVLYPNDRQSW 88
           K QET  E PK   EPLV F KFN++I+NEL MYLLDSHCYSKDDDLG  VLYPND QSW
Sbjct: 9   KSQETGPELPKPH-EPLVTFHKFNIRIYNELQMYLLDSHCYSKDDDLGTKVLYPNDEQSW 68

Query: 89  SFKGNWLGTTMFHCKLEWENGSLEFDAFSSNVEFLTNFCGNASCCWSVRQDGIYLTNRNG 148
           SF+GNWLGTT FHCKLEWENG LEFDAFS++V+FLTNFC  +SCCWS RQDG+YLTN+NG
Sbjct: 69  SFRGNWLGTTNFHCKLEWENGYLEFDAFSNDVKFLTNFCAKSSCCWSARQDGVYLTNQNG 128

Query: 149 QVVFKQHWEMLRT 162
           QVVF Q+WEM+RT
Sbjct: 129 QVVFNQNWEMIRT 140

[Close]
BLAST of Cla003790 vs. NCBI nr
Match: gi|700194417|gb|KGN49594.1| (hypothetical protein Csa_5G016040 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 5.4e-46
Identity = 80/136 (58.82%), Postives = 106/136 (77.94%), Query Frame = 1 

Query: 27  SKKKQETNSESPKLQ--GEPLVAFRKFNVQIHNELHMYLLDSHCYSKDDDLGVHVLYPND 86
           +KKK +  S +PKL     P+V F +F V+IHN+L M++LDSHCYSKDDDLG+H+L+P++
Sbjct: 2   AKKKAKNKSPTPKLSVPNNPVVMFERFTVEIHNDLRMFILDSHCYSKDDDLGLHILFPDE 61

Query: 87  RQSWSFKGNWLGTTMFHCKLEWENGSLEFDAFSSNVEFLTNFCGNASCCWSVRQDGIYLT 146
           +Q WSFKGNW+ TT FHC+LEWE G LEFD+F S  +F+TN+CGN +C WS RQDG+YL 
Sbjct: 62  KQDWSFKGNWIATTSFHCRLEWEVGYLEFDSFKSAPDFVTNYCGNQTCIWSARQDGVYLN 121

Query: 147 NRNGQVVFKQHWEMLR 161
           N  G+ VF  +WEM+R
Sbjct: 122 NAAGEQVFYNYWEMIR 137

[Close]
BLAST of Cla003790 vs. NCBI nr
Match: gi|659134192|ref|XP_008467075.1| (PREDICTED: uncharacterized protein LOC103504513, partial [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 3.3e-43
Identity = 82/136 (60.29%), Postives = 101/136 (74.26%), Query Frame = 1 

Query: 25  KTSKKKQETNSESPKLQGEPLVAFRKFNVQIHNELHMYLLDSHCYSKDDDLGVHVLYPND 84
           K S K +    + P L   PLV+F  F V+IHNEL  Y+LDS CYSKDDDLG+H LYPN+
Sbjct: 14  KKSPKNRVPKPDLP-LPNNPLVSFEGFRVEIHNELLTYILDSSCYSKDDDLGLHRLYPNE 73

Query: 85  RQSWSFKGNWLGTTMFHCKLEWENGSLEFDAFSSNVEFLTNFCGNASCCWSVRQDGIYLT 144
           +Q+WSFKGNW+ TT FHCKLEWE   LEFD+F S+ +F+TN+CGN +C WS RQDG+YL 
Sbjct: 74  QQNWSFKGNWIATTDFHCKLEWEIAYLEFDSFKSDPDFVTNYCGNRTCIWSARQDGVYLN 133

Query: 145 NRNGQVVFKQHWEMLR 161
           N  GQ VF  +WEML+
Sbjct: 134 NAVGQQVFYDYWEMLK 148

[Close]
BLAST of Cla003790 vs. NCBI nr
Match: gi|700196255|gb|KGN51432.1| (hypothetical protein Csa_5G538550 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-37
Identity = 74/154 (48.05%), Postives = 104/154 (67.53%), Query Frame = 1 

Query: 6   LMLSVTLLFVASLDVSIALKTSKKKQETNSESPKLQGEPLVAFRKFNVQIHNELHMYLLD 65
           L+L + L  +   D+S+A + S   Q+++          ++    + ++IHN+L MYLLD
Sbjct: 6   LVLLIFLFLIVLFDMSMA-RFSFAPQKSS----------IIQLHHYQIEIHNDLEMYLLD 65

Query: 66  SHCYSKDDDLGVHVLYPNDRQSWSFKGNWLGTTMFHCKLEWENGSLEFDAFSSNVEFLTN 125
           SHC+SKD+DLG+H+L+P + Q WSF+ N   TT F C LEWENG LEFD+F +N  FL N
Sbjct: 66  SHCFSKDNDLGLHILFPGELQDWSFQDNDFETTKFRCILEWENGLLEFDSFKTNHNFLNN 125

Query: 126 FCGNASCCWSVRQDGIYLTNRNGQVVFKQHWEML 160
           FCGN +C WS RQDG+YLTN  G+ VF+ +W+ML
Sbjct: 126 FCGNLTCSWSARQDGVYLTNVKGEYVFQDYWDML 148

[Close]
BLAST of Cla003790 vs. NCBI nr
Match: gi|659105279|ref|XP_008453057.1| (PREDICTED: uncharacterized protein LOC103493879, partial [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 62/105 (59.05%), Postives = 83/105 (79.05%), Query Frame = 1 

Query: 41  QGEPLVAFRKFNVQIHNELHMYLLDSHCYSKDDDLGVHVLYPNDRQSWSFKGNWLGTTMF 100
           Q   ++  R + V+IHN+L MYLLDSHC+SKD+DLG+H+L+P ++Q WSF+ N   TT F
Sbjct: 11  QKPSIIQLRHYQVKIHNDLEMYLLDSHCFSKDNDLGLHILFPGEQQDWSFEDNIFETTKF 70

Query: 101 HCKLEWENGSLEFDAFSSNVEFLTNFCGNASCCWSVRQDGIYLTN 146
            C+LEWENG LEFD+F S+++FL NFCGN +C WS +QDG+YLTN
Sbjct: 71  RCRLEWENGLLEFDSFKSDLDFLNNFCGNLTCSWSAKQDGVYLTN 115

The following BLAST results are available for this feature:
BLAST of Cla003790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL79_CUCSA3.8e-4658.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016040 PE=4 SV=1[more]
A0A0A0KSN2_CUCSA2.4e-3748.05Uncharacterized protein OS=Cucumis sativus GN=Csa_5G538550 PE=4 SV=1[more]
A0A0A0KIQ4_CUCSA6.2e-3355.30Uncharacterized protein OS=Cucumis sativus GN=Csa_5G017790 PE=4 SV=1[more]
M5VMC1_PRUPE1.1e-1642.34Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024473mg PE=4 SV=1[more]
B9SUI5_RICCO1.2e-1540.74Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0573340 PE=4 SV=1[more]
BLAST of Cla003790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659105271|ref|XP_008453055.1|8.9e-5776.69PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo][more]
gi|700194417|gb|KGN49594.1|5.4e-4658.82hypothetical protein Csa_5G016040 [Cucumis sativus][more]
gi|659134192|ref|XP_008467075.1|3.3e-4360.29PREDICTED: uncharacterized protein LOC103504513, partial [Cucumis melo][more]
gi|700196255|gb|KGN51432.1|3.5e-3748.05hypothetical protein Csa_5G538550 [Cucumis sativus][more]
gi|659105279|ref|XP_008453057.1|3.6e-3459.05PREDICTED: uncharacterized protein LOC103493879, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003790Cla003790.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 52..156
score: 2.9
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 48..146
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003790Cla97C08G146570Watermelon (97103) v2wmwmbB103
Cla003790ClCG08G002620Watermelon (Charleston Gray)wcgwmB403
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003790Cucumber (Chinese Long) v3cucwmB490
Cla003790Cucumber (Chinese Long) v3cucwmB501
Cla003790Cucumber (Gy14) v1cgywmB656
Cla003790Wild cucumber (PI 183967)cpiwmB479
Cla003790Wild cucumber (PI 183967)cpiwmB490
Cla003790Melon (DHL92) v3.5.1mewmB303
Cla003790Watermelon (Charleston Gray)wcgwmB410
Cla003790Cucumber (Chinese Long) v2cuwmB462
Cla003790Cucumber (Chinese Long) v2cuwmB475
Cla003790Bottle gourd (USVL1VR-Ls)lsiwmB470
Cla003790Cucumber (Gy14) v2cgybwmB434
Cla003790Cucumber (Gy14) v2cgybwmB446