Cla003321 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003321
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 33371028 .. 33371334 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGTACATGGATGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCTCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAATCTTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATAGACGGGATCAAGCTTCTAACTGTAAGTTTCAACTTACATAATAATCATATGCCAAAATTATAAAATTGTATAATTCAATAAAAGTAAAGACCTTTACACTAGATGATTACCACAATAACATGAGTTAGATTAACAGATCTCGTAA

mRNA sequence

ATGGATCGTACATGGATGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCTCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAATCTTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATAGACGGGATCAAGCTTCTAACTATCTCGTAA

Coding sequence (CDS)

ATGGATCGTACATGGATGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCTCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAATCTTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATAGACGGGATCAAGCTTCTAACTATCTCGTAA

Protein sequence

MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSIDGIKLLTIS

Homology

[Close]

BLAST of Cla003321 vs. TrEMBL
Match: U5CKY2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02909p00006680 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-20
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 1  MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSID 56
          MDRTW VVGVGGSLRVPSSGI GEEDQVGPCEQLDALSPFN LSEMRQKEGKS+D
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMD 55

[Close]

BLAST of Cla003321 vs. TrEMBL
Match: A0A0K9PBW1_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_313G00200 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-14
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 1  MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSID 56
          MD TWM VGVG S RVPSS I GEEDQVGPCEQ DAL PFN LSEM QKE K +D
Sbjct: 1  MDHTWMTVGVGSSSRVPSSEIPGEEDQVGPCEQFDALPPFNPLSEMWQKERKFMD 55

[Close]

BLAST of Cla003321 vs. TrEMBL
Match: A0A067JR25_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17569 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-13
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 1  MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEM-RQKEGKSIDGI 58
          MDRTW +VGVGGS RVPSSGI GEEDQVGPCEQLDALSPFN L++  ++KE    D I
Sbjct: 1  MDRTWTIVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLAKCGKRKENPWTDPI 58

[Close]

BLAST of Cla003321 vs. TrEMBL
Match: U5D9L3_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00179620 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 1  MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSI 55
          MDRTW +VGV GS RV S+GI GEEDQVGPCEQLDALSPF  L EM QKE KS+
Sbjct: 1  MDRTWTIVGVDGSHRVTSAGIPGEEDQVGPCEQLDALSPFTPLIEMWQKEEKSM 54

[Close]

BLAST of Cla003321 vs. TrEMBL
Match: A0A151UE16_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_050059 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 7  VVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSID 56
          VVGVGGS RV SSGI GEEDQVGPCEQLDALSPFN LSEMR+KE +S+D
Sbjct: 1  VVGVGGSPRVSSSGIPGEEDQVGPCEQLDALSPFNPLSEMRKKEKESMD 49

[Close]

BLAST of Cla003321 vs. NCBI nr
Match: gi|548835773|gb|ERM97427.1| (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda])

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 1  MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSID 56
          MDRTW VVGVGGSLRVPSSGI GEEDQVGPCEQLDALSPFN LSEMRQKEGKS+D
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMD 55

[Close]

BLAST of Cla003321 vs. NCBI nr
Match: gi|901808862|gb|KMZ65670.1| (hypothetical protein ZOSMA_313G00200 [Zostera marina])

HSP 1 Score: 85.1 bits (209), Expect = 4.7e-14
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 1  MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSID 56
          MD TWM VGVG S RVPSS I GEEDQVGPCEQ DAL PFN LSEM QKE K +D
Sbjct: 1  MDHTWMTVGVGSSSRVPSSEIPGEEDQVGPCEQFDALPPFNPLSEMWQKERKFMD 55

[Close]

BLAST of Cla003321 vs. NCBI nr
Match: gi|643713746|gb|KDP26411.1| (hypothetical protein JCGZ_17569 [Jatropha curcas])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 1  MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEM-RQKEGKSIDGI 58
          MDRTW +VGVGGS RVPSSGI GEEDQVGPCEQLDALSPFN L++  ++KE    D I
Sbjct: 1  MDRTWTIVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLAKCGKRKENPWTDPI 58

[Close]

BLAST of Cla003321 vs. NCBI nr
Match: gi|548861813|gb|ERN19184.1| (hypothetical protein AMTR_s00061p00179620 [Amborella trichopoda])

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 1  MDRTWMVVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSI 55
          MDRTW +VGV GS RV S+GI GEEDQVGPCEQLDALSPF  L EM QKE KS+
Sbjct: 1  MDRTWTIVGVDGSHRVTSAGIPGEEDQVGPCEQLDALSPFTPLIEMWQKEEKSM 54

[Close]

BLAST of Cla003321 vs. NCBI nr
Match: gi|1012366342|gb|KYP77523.1| (hypothetical protein KK1_050059, partial [Cajanus cajan])

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 7  VVGVGGSLRVPSSGISGEEDQVGPCEQLDALSPFNLLSEMRQKEGKSID 56
          VVGVGGS RV SSGI GEEDQVGPCEQLDALSPFN LSEMR+KE +S+D
Sbjct: 1  VVGVGGSPRVSSSGIPGEEDQVGPCEQLDALSPFNPLSEMRKKEKESMD 49

The following BLAST results are available for this feature:

BLAST of Cla003321 vs. TrEMBL


Match Name	E-value	Identity	Description
U5CKY2_AMBTC	1.8e-20	92.73	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02909p00006680 PE=4 SV=...	[more]
A0A0K9PBW1_ZOSMR	3.3e-14	76.36	Uncharacterized protein OS=Zostera marina GN=ZOSMA_313G00200 PE=4 SV=1	[more]
A0A067JR25_JATCU	1.3e-13	72.41	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17569 PE=4 SV=1	[more]
U5D9L3_AMBTC	1.6e-13	75.93	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00179620 PE=4 SV=...	[more]
A0A151UE16_CAJCA	2.8e-13	83.67	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_050059 PE=4 SV=1	[more]

BLAST of Cla003321 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|548835773\|gb\|ERM97427.1\|	2.6e-20	92.73	hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]	[more]
gi\|901808862\|gb\|KMZ65670.1\|	4.7e-14	76.36	hypothetical protein ZOSMA_313G00200 [Zostera marina]	[more]
gi\|643713746\|gb\|KDP26411.1\|	1.8e-13	72.41	hypothetical protein JCGZ_17569 [Jatropha curcas]	[more]
gi\|548861813\|gb\|ERN19184.1\|	2.4e-13	75.93	hypothetical protein AMTR_s00061p00179620 [Amborella trichopoda]	[more]
gi\|1012366342\|gb\|KYP77523.1\|	4.0e-13	83.67	hypothetical protein KK1_050059, partial [Cajanus cajan]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003321	Cla003321.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003321	ClCG09G021430	Watermelon (Charleston Gray)	wcgwmB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003321	Wax gourd	wgowmB581
Cla003321	Cucurbita maxima (Rimu)	cmawmB009
Cla003321	Cucurbita maxima (Rimu)	cmawmB410
Cla003321	Cucurbita moschata (Rifu)	cmowmB001
Cla003321	Cucurbita moschata (Rifu)	cmowmB404
Cla003321	Wild cucumber (PI 183967)	cpiwmB579
Cla003321	Melon (DHL92) v3.5.1	mewmB185
Cla003321	Cucumber (Chinese Long) v2	cuwmB558
Cla003321	Cucurbita pepo (Zucchini)	cpewmB531
Cla003321	Cucurbita pepo (Zucchini)	cpewmB753
Cla003321	Bottle gourd (USVL1VR-Ls)	lsiwmB177
Cla003321	Cucumber (Gy14) v2	cgybwmB523
Cla003321	Melon (DHL92) v3.6.1	medwmB197
Cla003321	Silver-seed gourd	carwmB0428
Cla003321	Silver-seed gourd	carwmB0886
Cla003321	Cucumber (Chinese Long) v3	cucwmB585
Cla003321	Watermelon (97103) v2	wmwmbB042