Cla003273 (gene) Watermelon (97103) v1

Overview
NameCla003273
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionBifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein (AHRD V1 **-- Q8GXG3_ARATH); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor
LocationChr9 : 32942905 .. 32943168 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTGGCAGGTACTAGCACCAACCCTTTGTGTAAGATTGACACGAAGGAGCTTGGTGTGTGTCAACCAGCAGTGGCTCCTTGGCATGGAAAACCATTGCAACCACCAACTAAAGGTTGTTGTTCGGTGCTTCGTCGTGCCGATCTCAAGTGTTTGTGCAACTTCAAATCAATCCTCCCATCCATTGGGATTAATATAACCAATGCTTTGGCTTTGCCTTCCAAATGTGACATTAAAACTCCTCCAGAGTGTCATAATTAG

mRNA sequence

ATGCTTCTGGCAGGTACTAGCACCAACCCTTTGTGTAAGATTGACACGAAGGAGCTTGGTGTGTGTCAACCAGCAGTGGCTCCTTGGCATGGAAAACCATTGCAACCACCAACTAAAGGTTGTTGTTCGGTGCTTCGTCGTGCCGATCTCAAGTGTTTGTGCAACTTCAAATCAATCCTCCCATCCATTGGGATTAATATAACCAATGCTTTGGCTTTGCCTTCCAAATGTGACATTAAAACTCCTCCAGAGTGTCATAATTAG

Coding sequence (CDS)

ATGCTTCTGGCAGGTACTAGCACCAACCCTTTGTGTAAGATTGACACGAAGGAGCTTGGTGTGTGTCAACCAGCAGTGGCTCCTTGGCATGGAAAACCATTGCAACCACCAACTAAAGGTTGTTGTTCGGTGCTTCGTCGTGCCGATCTCAAGTGTTTGTGCAACTTCAAATCAATCCTCCCATCCATTGGGATTAATATAACCAATGCTTTGGCTTTGCCTTCCAAATGTGACATTAAAACTCCTCCAGAGTGTCATAATTAG

Protein sequence

MLLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSILPSIGINITNALALPSKCDIKTPPECHN
Homology
[Close]
BLAST of Cla003273 vs. Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-07
Identity = 30/87 (34.48%), Postives = 44/87 (50.57%), Query Frame = 1 

Query: 1   MLLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSI- 60
           ML+  +    LC +   EL  C+PAV+  +      P++ CC+ L+ AD  CLC +K+  
Sbjct: 19  MLVDTSVAIDLCGMSQDELNECKPAVSKENPTS---PSQPCCTALQHADFACLCGYKNSP 78

Query: 61  -LPSIGINITNALALPSKCDIKTPPEC 86
            L S G++   A ALP +C +   P C
Sbjct: 79  WLGSFGVDPELASALPKQCGLANAPTC 102

[Close]
BLAST of Cla003273 vs. TrEMBL
Match: A0A0A0LBB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G759990 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-30
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 1 

Query: 1   MLLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSIL 60
           M+LA T+   LCK+DTKEL VC+PAVAP HGKPLQPPT+ CCSVLR ADLKCLCN KSIL
Sbjct: 21  MVLAETTATLLCKVDTKELCVCRPAVAPLHGKPLQPPTERCCSVLRSADLKCLCNLKSIL 80

Query: 61  PSIGINITNALALPSKCDIKTPPEC 86
           PS GIN T ALALPSKC I +PPEC
Sbjct: 81  PSAGINATIALALPSKCGIPSPPEC 105

[Close]
BLAST of Cla003273 vs. TrEMBL
Match: A0A0A0LAS6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G760500 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-24
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 1 

Query: 1   MLLAGTSTNPLCKIDTKELGVCQPAVAPW-HGKPLQPPTKGCCSVLRRADLKCLCNFKSI 60
           +L A  +  PLCKIDT +L +C+ AV P  HG+PL  PT+ CCSV+R ADLKCLCN KS+
Sbjct: 16  LLPAAVTAYPLCKIDTSDLKLCRSAVTPPDHGQPLPLPTEDCCSVVRHADLKCLCNLKSV 75

Query: 61  LPSIGINITNALALPSKCDIKTPPECHN 88
           LPS+GI+  NALALPSKC++ +PPECH+
Sbjct: 76  LPSMGIDTANALALPSKCNVASPPECHS 103

[Close]
BLAST of Cla003273 vs. TrEMBL
Match: C6T4Z3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.8e-17
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1 

Query: 2   LLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSILP 61
           LL G     +C ID+ +L +C+ AV    G+   PP + CC+V+R+A+L+CLC++KSILP
Sbjct: 21  LLGGAQAVAICNIDSSQLSLCRAAVT---GQNPPPPDEKCCAVIRQANLRCLCSYKSILP 80

Query: 62  SIGINITNALALPSKCDIKTPPEC 86
           S GIN  NALALP KC +++PP C
Sbjct: 81  SFGINPKNALALPGKCGLQSPPNC 101

[Close]
BLAST of Cla003273 vs. TrEMBL
Match: A0A059BVH1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03514 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.8e-17
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 2   LLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSILP 61
           ++ G     +CKI T +L  C PAVA  H  P   PTK CC V+ +AD+ CLC ++S+LP
Sbjct: 21  MMGGAKATTICKIPTDKLTFCLPAVAGDHPSP---PTKQCCKVISKADMPCLCQYRSVLP 80

Query: 62  SIGINITNALALPSKCDIKTPPECHN 88
           + GI   NA+ALP KC +K PP+C N
Sbjct: 81  NYGIKPANAMALPKKCGLKAPPKCSN 103

[Close]
BLAST of Cla003273 vs. TrEMBL
Match: K7MTB4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G191800 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.8e-17
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1 

Query: 2   LLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSILP 61
           LL G     +C ID+ +L +C+ AV    G+   PP + CC+V+R+A+L+CLC++KSILP
Sbjct: 21  LLGGAQAVAICNIDSSQLNLCRAAVT---GQNPPPPDEKCCAVIRQANLRCLCSYKSILP 80

Query: 62  SIGINITNALALPSKCDIKTPPEC 86
           S GIN  NALALP KC +++PP C
Sbjct: 81  SFGINPKNALALPGKCGLQSPPNC 101

[Close]
BLAST of Cla003273 vs. NCBI nr
Match: gi|659093748|ref|XP_008447696.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-31
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1 

Query: 1   MLLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSIL 60
           M+LAGTS   LCK+DTK+L VC+PAVAP HGKPLQPPTK CCSV+R ADLKCLCN KSIL
Sbjct: 21  MVLAGTSATLLCKVDTKKLCVCRPAVAPLHGKPLQPPTKRCCSVVRSADLKCLCNLKSIL 80

Query: 61  PSIGINITNALALPSKCDIKTPPEC 86
           PS GIN T ALALPSKC I+TPPEC
Sbjct: 81  PSAGINATIALALPSKCGIRTPPEC 105

[Close]
BLAST of Cla003273 vs. NCBI nr
Match: gi|700203945|gb|KGN59078.1| (hypothetical protein Csa_3G759990 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 8.5e-30
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 1 

Query: 1   MLLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSIL 60
           M+LA T+   LCK+DTKEL VC+PAVAP HGKPLQPPT+ CCSVLR ADLKCLCN KSIL
Sbjct: 21  MVLAETTATLLCKVDTKELCVCRPAVAPLHGKPLQPPTERCCSVLRSADLKCLCNLKSIL 80

Query: 61  PSIGINITNALALPSKCDIKTPPEC 86
           PS GIN T ALALPSKC I +PPEC
Sbjct: 81  PSAGINATIALALPSKCGIPSPPEC 105

[Close]
BLAST of Cla003273 vs. NCBI nr
Match: gi|449465073|ref|XP_004150253.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-24
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 1 

Query: 1   MLLAGTSTNPLCKIDTKELGVCQPAVAPW-HGKPLQPPTKGCCSVLRRADLKCLCNFKSI 60
           +L A  +  PLCKIDT +L +C+ AV P  HG+PL  PT+ CCSV+R ADLKCLCN KS+
Sbjct: 16  LLPAAVTAYPLCKIDTSDLKLCRSAVTPPDHGQPLPLPTEDCCSVVRHADLKCLCNLKSV 75

Query: 61  LPSIGINITNALALPSKCDIKTPPECHN 88
           LPS+GI+  NALALPSKC++ +PPECH+
Sbjct: 76  LPSMGIDTANALALPSKCNVASPPECHS 103

[Close]
BLAST of Cla003273 vs. NCBI nr
Match: gi|659093746|ref|XP_008447695.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 4.5e-23
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1 

Query: 1   MLLAGTSTN-PLCKIDTKELGVCQPAVAPW-HGKPLQPPTKGCCSVLRRADLKCLCNFKS 60
           +LLAG  T+ PLC+IDT +L VC+PAV P  HGK L  PT  CCSV+RRADLKCLC+ K 
Sbjct: 15  LLLAGAVTSSPLCEIDTTDLEVCRPAVTPPDHGKTLPLPTDACCSVVRRADLKCLCSLKY 74

Query: 61  ILPSIGINITNALALPSKCDIKTPPECHN 88
            LPS GIN  NALALPSKC +  PPEC +
Sbjct: 75  ALPSFGINTANALALPSKCGVSPPPECRS 103

[Close]
BLAST of Cla003273 vs. NCBI nr
Match: gi|694423146|ref|XP_009339389.1| (PREDICTED: putative lipid-transfer protein DIR1 [Pyrus x bretschneideri])

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 1 

Query: 2   LLAGTSTNPLCKIDTKELGVCQPAVAPWHGKPLQPPTKGCCSVLRRADLKCLCNFKSILP 61
           L+AG++   +C I++ +L  C+PAV    GK  +PPTK CCSV+R+A+L CLCNFKS+LP
Sbjct: 19  LVAGSTAVSICNIESDQLKECRPAVT---GKSPKPPTKRCCSVVRQANLPCLCNFKSVLP 78

Query: 62  SIGINITNALALPSKCDIKTPPECH 87
           SIGI+   A+ALP KC +KTP ECH
Sbjct: 79  SIGIDPALAMALPKKCGLKTPRECH 100

The following BLAST results are available for this feature:
BLAST of Cla003273 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DIRL1_ARATH7.7e-0734.48Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1[more]
BLAST of Cla003273 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBB0_CUCSA5.9e-3076.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G759990 PE=4 SV=1[more]
A0A0A0LAS6_CUCSA2.2e-2461.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G760500 PE=4 SV=1[more]
C6T4Z3_SOYBN9.8e-1750.00Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A059BVH1_EUCGR9.8e-1747.67Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03514 PE=4 SV=1[more]
K7MTB4_SOYBN9.8e-1750.00Uncharacterized protein OS=Glycine max GN=GLYMA_18G191800 PE=4 SV=1[more]
BLAST of Cla003273 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093748|ref|XP_008447696.1|1.5e-3178.82PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo][more]
gi|700203945|gb|KGN59078.1|8.5e-3076.47hypothetical protein Csa_3G759990 [Cucumis sativus][more]
gi|449465073|ref|XP_004150253.1|3.1e-2461.36PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus][more]
gi|659093746|ref|XP_008447695.1|4.5e-2364.04PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo][more]
gi|694423146|ref|XP_009339389.1|1.8e-1956.47PREDICTED: putative lipid-transfer protein DIR1 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU06305watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003273Cla003273.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU06305WMU06305transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 31..85
score: 9.1
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 12..85
score: 5.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 12..85
score: 4.19
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 16..82
score: 2.
NoneNo IPR availablePANTHERPTHR33122FAMILY NOT NAMEDcoord: 1..85
score: 1.1
NoneNo IPR availablePANTHERPTHR33122:SF4BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN-LIKE PROTEINcoord: 1..85
score: 1.1