Cla003051 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003051
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Alpha 1 4-glycosyltransferase family protein (AHRD V1 ***- D7KW57_ARALL); contains Interpro domain(s) IPR007652 Alpha 1,4-glycosyltransferase conserved region
Location	Chr1 : 15618705 .. 15619657 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAAACGTGTGCTATATCACCCATATTGCCAACCATCTTGCTTCCAACCATCATCTTCCTTATATGTGGTGATGGCATAATCTACAAAGTTTCGATTCGAACAGTATCCATAGATGAGAAAGGAAATTAAAACTCAACAATTACGTGCATAACAGAAGTGCAAATTGAGAAAAATTTAGTTGCAGAGCCACTGCAGTCCTCACCAGAAAACAGAGATGATGATGTTGATAGTGAAACTTCTGATTTCTTGGTAGTTCCATCCAATCTTTCAGCAAAAAAATGCAAAAAATTGACCCAGCAGTTTCGAAATCAACTTCTCAAGTTTCTCAGCCATGAGTGTGAGATACAATTCTTCATGACATGGGTATTTGCAGCAAGATCTTTCAGGGAAAGAGAACTAATGGCAGCACAAAGTGTTTTTAAGTCTCACCCCGTGGATGCTTAACTATTCTATCAAGAACGCTATGTTCAGAAAGAGGCTGCAAGATTGTTAAACCTCTACTTGATCATGGGTTTAAAATTCTGGCAATCACACCAGGACTTGCCTTCGCTATTCAAAAACATCCCGGTTGAGGGTTGGTTTGATGAGATGAAGAGTGGAAAAGAAGACCCAGGTCCAATTCCATTAGCTCAGAATCTATCTAACAGTTTTATACAAGTATGGAGGTGTTTACATAGATACATACTTTATTGTTTTGAAGTCTTTCATGGGGTTGAAGAACTCAATTGGCGCAAAAGCATCCACTTCTATAGGAATTCATGGAAAATTTTGCATCAAATTTTGATGGGAGTAGATGGGGATATAATGGACCTTTTCTGGTCTCCAGAGTAATAGCAAATGTAGGAGCCAGAGCTAAACCTGGTTTCAACGTCACTGTACTGCCACCATCAACGTTCTACCCAGTGAAGTGGATCAAGATTGGTGAATTTTATAAGAAGCTCAGCTAA

mRNA sequence

ATGTCTGAAACGTGTGCTATATCACCCATATTGCCAACCATCTTGCTTCCAACCATCATCTTCCTTATATGTGGTGATGGCATAATCTACAAAGTTTCGATTCGAACAGAATTCATGGAAAATTTTGCATCAAATTTTGATGGGAGTAGATGGGGATATAATGGACCTTTTCTGGTCTCCAGAGTAATAGCAAATGTAGGAGCCAGAGCTAAACCTGGTTTCAACGTCACTGTACTGCCACCATCAACGTTCTACCCAGTGAAGTGGATCAAGATTGGTGAATTTTATAAGAAGCTCAGCTAA

Coding sequence (CDS)

ATGTCTGAAACGTGTGCTATATCACCCATATTGCCAACCATCTTGCTTCCAACCATCATCTTCCTTATATGTGGTGATGGCATAATCTACAAAGTTTCGATTCGAACAGAATTCATGGAAAATTTTGCATCAAATTTTGATGGGAGTAGATGGGGATATAATGGACCTTTTCTGGTCTCCAGAGTAATAGCAAATGTAGGAGCCAGAGCTAAACCTGGTTTCAACGTCACTGTACTGCCACCATCAACGTTCTACCCAGTGAAGTGGATCAAGATTGGTGAATTTTATAAGAAGCTCAGCTAA

Protein sequence

MSETCAISPILPTILLPTIIFLICGDGIIYKVSIRTEFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTFYPVKWIKIGEFYKKLS

Homology

[Close]

BLAST of Cla003051 vs. TrEMBL
Match: A0A0A0LDG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731870 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-23
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 37  EFMENFASNFDGSRWGYNGPFLVSRVIANV-GARAKPGFNVTVLPPSTFYPVKWIKIGEF 96
           +FMENFASNFDGSRWG+NGPFLVSRVIA + GARAKPGFNVT+LPP+ FYPV WIKIGE 
Sbjct: 296 KFMENFASNFDGSRWGHNGPFLVSRVIAKITGARAKPGFNVTILPPAAFYPVDWIKIGEL 355

Query: 97  YKK 99
           +KK
Sbjct: 356 FKK 358

[Close]

BLAST of Cla003051 vs. TrEMBL
Match: A0A0A0LDG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731870 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 1  MSETCAISPILPTILLPTIIFLICGDGIIYKVSIRT 37
          MSE CAISPILPTILL  IIFLICGD IIYKVSIRT
Sbjct: 1  MSERCAISPILPTILLAAIIFLICGDSIIYKVSIRT 36

HSP 2 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 37  EFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTFYPVKWIKIGEFY 96
           +F+E FAS FDG++WG+NGP+LVSRV+  V  R  PG+N TVLPP  FYPV W +IG F+
Sbjct: 307 KFIEEFASTFDGNKWGHNGPYLVSRVVQKVAGR--PGYNFTVLPPMAFYPVGWNRIGGFF 366

Query: 97  KK 99
           KK
Sbjct: 367 KK 366

[Close]

BLAST of Cla003051 vs. TrEMBL
Match: B9HD92_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s09980g PE=4 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 37  EFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTFYPVKWIKIGEFY 96
           +F+E FAS FDG++WG+NGP+LVSRV+  V  R  PG+N T+LPP  FYPV W +IG F+
Sbjct: 187 KFIEEFASTFDGNKWGHNGPYLVSRVVQKVAER--PGYNFTILPPMAFYPVGWNRIGGFF 246

Query: 97  KK 99
           KK
Sbjct: 247 KK 246

[Close]

BLAST of Cla003051 vs. TrEMBL
Match: A0A067JKQ3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25036 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 37  EFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTFYPVKWIKIGEFY 96
           +F+E FA+ FDG++WG+NGP+LVSRV   +  R  PGFN TVLPP  FYPV W KIG F+
Sbjct: 269 KFIEEFAATFDGNKWGHNGPYLVSRVAQKLSGR--PGFNFTVLPPMAFYPVNWNKIGGFF 328

Query: 97  KK 99
           KK
Sbjct: 329 KK 328

[Close]

BLAST of Cla003051 vs. TrEMBL
Match: A0A162AXE4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_008050 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-14
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 25  GDGIIYKVSIRTEFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTF 84
           G  ++YK      F+E FA  FDG++WG+NGP+LVSRV++ V  R  PG+N TVLPP  F
Sbjct: 202 GHPLLYK------FIEEFALTFDGNKWGHNGPYLVSRVVSRVTGR--PGYNFTVLPPIAF 261

Query: 85  YPVKWIKIGEFYKK 99
           YPV W +IGEF+++
Sbjct: 262 YPVDWSRIGEFFQR 267

[Close]

BLAST of Cla003051 vs. NCBI nr
Match: gi|449440279|ref|XP_004137912.1| (PREDICTED: lactosylceramide 4-alpha-galactosyltransferase [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 37  EFMENFASNFDGSRWGYNGPFLVSRVIANV-GARAKPGFNVTVLPPSTFYPVKWIKIGEF 96
           +FMENFASNFDGSRWG+NGPFLVSRVIA + GARAKPGFNVT+LPP+ FYPV WIKIGE 
Sbjct: 296 KFMENFASNFDGSRWGHNGPFLVSRVIAKITGARAKPGFNVTILPPAAFYPVDWIKIGEL 355

Query: 97  YKK 99
           +KK
Sbjct: 356 FKK 358

[Close]

BLAST of Cla003051 vs. NCBI nr
Match: gi|449440279|ref|XP_004137912.1| (PREDICTED: lactosylceramide 4-alpha-galactosyltransferase [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 1  MSETCAISPILPTILLPTIIFLICGDGIIYKVSIRT 37
          MSE CAISPILPTILL  IIFLICGD IIYKVSIRT
Sbjct: 1  MSERCAISPILPTILLAAIIFLICGDSIIYKVSIRT 36

HSP 2 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 31  KVSIRTEFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTFYPVKWI 90
           K  I  +F+E FA  FDG+RWG+NGP++VSRV+  VG    PG+++T+LPP  FYPV W 
Sbjct: 311 KHPILLDFIEEFAQTFDGNRWGHNGPYMVSRVVGRVG--NTPGYDITILPPKAFYPVDWN 370

Query: 91  KIGEFYKK 99
           KI E+YKK
Sbjct: 371 KIPEYYKK 376

[Close]

BLAST of Cla003051 vs. NCBI nr
Match: gi|1012114872|ref|XP_015960895.1| (PREDICTED: lactosylceramide 4-alpha-galactosyltransferase-like [Arachis duranensis])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 31  KVSIRTEFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTFYPVKWI 90
           K  I  +F+E FA  FDG+RWG+NGP++VSRV+  VG    PG+++T+LPP  FYPV W 
Sbjct: 314 KHPILLDFIEEFAQTFDGNRWGHNGPYMVSRVVGRVG--NTPGYDITILPPKAFYPVDWN 373

Query: 91  KIGEFYKK 99
           KI E+YKK
Sbjct: 374 KIPEYYKK 379

[Close]

BLAST of Cla003051 vs. NCBI nr
Match: gi|566209854|ref|XP_002323569.2| (hypothetical protein POPTR_0016s12140g [Populus trichocarpa])

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 37  EFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTFYPVKWIKIGEFY 96
           +F+E FAS FDG++WG+NGP+LVSRV+  V  R  PG+N TVLPP  FYPV W +IG F+
Sbjct: 307 KFIEEFASTFDGNKWGHNGPYLVSRVVQKVAGR--PGYNFTVLPPMAFYPVGWNRIGGFF 366

Query: 97  KK 99
           KK
Sbjct: 367 KK 366

[Close]

BLAST of Cla003051 vs. NCBI nr
Match: gi|643710265|gb|KDP24472.1| (hypothetical protein JCGZ_25036 [Jatropha curcas])

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-14
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 37  EFMENFASNFDGSRWGYNGPFLVSRVIANVGARAKPGFNVTVLPPSTFYPVKWIKIGEFY 96
           +F+E FA+ FDG++WG+NGP+LVSRV   +  R  PGFN TVLPP  FYPV W KIG F+
Sbjct: 269 KFIEEFAATFDGNKWGHNGPYLVSRVAQKLSGR--PGFNFTVLPPMAFYPVNWNKIGGFF 328

Query: 97  KK 99
           KK
Sbjct: 329 KK 328

The following BLAST results are available for this feature:

BLAST of Cla003051 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDG3_CUCSA	8.1e-23	82.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731870 PE=4 SV=1	[more]
A0A0A0LDG3_CUCSA	5.6e-08	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731870 PE=4 SV=1	[more]
B9HD92_POPTR	2.4e-14	59.68	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s09980g P...	[more]
A0A067JKQ3_JATCU	2.4e-14	61.29	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25036 PE=4 SV=1	[more]
A0A162AXE4_DAUCA	4.0e-14	52.70	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_008050 PE=4 SV=1	[more]

BLAST of Cla003051 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440279\|ref\|XP_004137912.1\|	1.2e-22	82.54	PREDICTED: lactosylceramide 4-alpha-galactosyltransferase [Cucumis sativus]	[more]
gi\|449440279\|ref\|XP_004137912.1\|	8.0e-08	88.89	PREDICTED: lactosylceramide 4-alpha-galactosyltransferase [Cucumis sativus]	[more]
gi\|1012114872\|ref\|XP_015960895.1\|	1.2e-14	55.88	PREDICTED: lactosylceramide 4-alpha-galactosyltransferase-like [Arachis duranens...	[more]
gi\|566209854\|ref\|XP_002323569.2\|	2.0e-14	61.29	hypothetical protein POPTR_0016s12140g [Populus trichocarpa]	[more]
gi\|643710265\|gb\|KDP24472.1\|	3.4e-14	61.29	hypothetical protein JCGZ_25036 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007652	A1-4-GlycosylTfrase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003051	Cla003051.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007652	Alpha 1,4-glycosyltransferase domain	PFAM	PF04572	Gb3_synth	coord: 35..97 score: 4.9
None	No IPR available	PANTHER	PTHR12042	LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE ALPHA- 1,4-GALACTOSYLTRANSFERASE	coord: 38..97 score: 1.5
None	No IPR available	PANTHER	PTHR12042:SF18	ALPHA 1,4-GLYCOSYLTRANSFERASE-LIKE PROTEIN	coord: 38..97 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003051	Cla97C01G011500	Watermelon (97103) v2	wmwmbB241
Cla003051	ClCG01G012100	Watermelon (Charleston Gray)	wcgwmB148

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003051	Cucumber (Chinese Long) v3	cucwmB049
Cla003051	Cucumber (Chinese Long) v3	cucwmB063
Cla003051	Wax gourd	wgowmB504
Cla003051	Wax gourd	wgowmB510
Cla003051	Cucumber (Gy14) v1	cgywmB581
Cla003051	Cucurbita maxima (Rimu)	cmawmB384
Cla003051	Cucurbita maxima (Rimu)	cmawmB386
Cla003051	Cucurbita moschata (Rifu)	cmowmB376
Cla003051	Cucurbita moschata (Rifu)	cmowmB384
Cla003051	Melon (DHL92) v3.5.1	mewmB163
Cla003051	Cucumber (Chinese Long) v2	cuwmB042
Cla003051	Cucumber (Chinese Long) v2	cuwmB057
Cla003051	Cucurbita pepo (Zucchini)	cpewmB048
Cla003051	Bottle gourd (USVL1VR-Ls)	lsiwmB264
Cla003051	Cucumber (Gy14) v2	cgybwmB043
Cla003051	Cucumber (Gy14) v2	cgybwmB057
Cla003051	Melon (DHL92) v3.6.1	medwmB159
Cla003051	Melon (DHL92) v3.6.1	medwmB167
Cla003051	Silver-seed gourd	carwmB0001
Cla003051	Silver-seed gourd	carwmB0002