Cla002861 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002861
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RNA-binding region RNP-1 (AHRD V1 **** B6TT30_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1
Location	Chr8 : 14166855 .. 14168707 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCAACGAAGGATGATCAATTTCCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAATCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCAAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGTCTCAGTTCCCTTTCATGATTTCCGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCTGAAGTTACATTCTTGCTGAAGGCATGAGTTTCAAAATCCCATCTCTCAACACCCCCCAAACCAAAAATAAAATAGAAATAAAAATAAAAATAAAAATAAAAATAAAAATCTATTATGGTTGTTCTTATTTAGTGCTTGAATTTTAAAAAGTTTGAATTATATATCTGAACTTTGAATTGTGATTCTTAGACGATGTGAGATATTTAGTAGACGAACGTTAGTTAATTTAGCACAATGTGGCATAGGTGACAAAAGAAAGAGGCTAGTTAGCAACATGCCTTGTAGATTGTTATCACTCTGTTTTGTTTAGCTATCCTCTCTCTCGTCTTCCATTTTTGTGCCACATTGTGCTAAATCAATCCATTAGCATTTGTTTATCTGATAAGAGTATTGGAATCATAATTGAAAGTTTGTGTATGTAATTAGAACCTTTTAAAATTAAATAAACACAACCATTAACGTTTGGACTATATTTTGAATGTGGTCAAATTATAAGTTGGGTCCCACAACTTTGAGATTTTCTCGTGATTGTTTAGTTCATTTACTTTTAAATCTCTCTAGTAGGTCTCCTCAACTTTCCAGTTGTGTCTGTTTAACCCTTATACTTTAAAAGAATATAATAGCTTTCTAGCTTTTAGGTTGGGTCTATTTAACCCTCATTTTTATAAAAAAGGGTAATTGTAAAGGGAATATTTTTAGGGTTGATAATCAAGTGTATAGCAACATTTTTAAAGAATTGCAAATATAACAAAATCTATTGATGATAGGCTCTATCGTTGATGTACCTATTAGTGGTAGACTTTGATAGCTGAATTTAAATTTTGATATATGTGCAAATTCTTTGTGCTATATCTGTTAATACTTTGAGCTTGGTTGCTATTTTTGCAACTGTCCTTTTAATATACTTGAAATCAACCCATTTGTGTATCGCTCAAGTAAGTGTTAAGGTGGTGGAGTTAACTATGAGATCTATTAGGCACAAAGTTAAAAAGTTAGACACATTTTGAAGTACAAAGATTAAGTAGATACGATCTTGAAAGATTAAGTAGATACGATCTTGATCTTGAAAGCCTTGAATCTATTAGAAATCCTTTGAAATATAGGAATAAGTAAACACAACTCTAAAAGTTTAGGGATCATATTGGTAATTTGGGCTAACATAGATTCCTCCAATTCCTCTGCAGCACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAA

mRNA sequence

ATGGGATCAACGAAGGATGATCAATTTCCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAATCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCAAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGTCTCAGTTCCCTTTCATGATTTCCGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCTGAACACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAA

Coding sequence (CDS)

ATGGGATCAACGAAGGATGATCAATTTCCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAATCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCAAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGTCTCAGTTCCCTTTCATGATTTCCGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCTGAACACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAA

Protein sequence

MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAEHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD

Homology

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BLAST of Cla002861 vs. TrEMBL
Match: A0A0A0KAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.6e-87
Identity = 174/229 (75.98%), Postives = 184/229 (80.35%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QF MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           QCALVEMKD KEAKSVI+VI+QFPFMM                              SGM
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMM------------------------------SGM 120

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRPVRARPAEVEMFDDRPVKPGRKISF WLE DDPDFEVA++IK L++KHVAE       
Sbjct: 121 PRPVRARPAEVEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQ 180

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
           H+AEEEKLAKQQQE LKGNYKKYEIV+SVMADGTARRLAKHYNMR+SDD
Sbjct: 181 HMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD 199

[Close]

BLAST of Cla002861 vs. TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.5e-64
Identity = 129/229 (56.33%), Postives = 160/229 (69.87%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S   +++ +FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 61  MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 120

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           +CALVEM    EA+++IS ++ +PFMM                              SGM
Sbjct: 121 RCALVEMAKQSEAEAIISDMNNYPFMM------------------------------SGM 180

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRP RARPAEVEMFDDRP+KPGR+I   WL+K+DPDFEVAKK+K L +KH +E      +
Sbjct: 181 PRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDPDFEVAKKLKHLVRKHASEASFMLKN 240

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
            L EEEKLAKQQ E LK NYKKYE+++SV+ADG ARRLA+HYN  VSDD
Sbjct: 241 QLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAARRLARHYNFNVSDD 259

[Close]

BLAST of Cla002861 vs. TrEMBL
Match: A0A061EIN5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.5e-64
Identity = 134/229 (58.52%), Postives = 159/229 (69.43%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS +  ++  FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SVHFIPNY EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           QCALVEM+  K+ + VIS ISQFPFMM                              SGM
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMM------------------------------SGM 120

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRPVRAR A+VEMF DRP +PGR+I F WL+  DPDFEVA K+K L ++H  E      H
Sbjct: 121 PRPVRARAAKVEMFSDRPRQPGRRIHFRWLDPADPDFEVANKLKHLAKRHATETAVMLKH 180

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
            L +EEKLAKQQ EALK NYKKYE+++S+MADGTARRLA+ Y++RVSDD
Sbjct: 181 QLEKEEKLAKQQGEALKANYKKYEMIDSLMADGTARRLARRYDLRVSDD 199

[Close]

BLAST of Cla002861 vs. TrEMBL
Match: A0A067L601_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.8e-62
Identity = 128/229 (55.90%), Postives = 154/229 (67.25%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS   +++  FEEKVKRTVY+DNLSPQVTE VL++AL+QFG V+ V F+PNY EP N S
Sbjct: 1   MGSKAQEEYAAFEEKVKRTVYIDNLSPQVTEAVLKSALNQFGIVLRVTFVPNYLEPQNIS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           +CALVEMK+ K AK+V+S I                              +QFPFM+SGM
Sbjct: 61  RCALVEMKEAKHAKAVVSEI------------------------------AQFPFMVSGM 120

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRPVRARPAE+EMFDDRP +PGRKI   WLE  DPDFEVA+K+K LT+KH AE       
Sbjct: 121 PRPVRARPAEIEMFDDRPRRPGRKIHCRWLEPGDPDFEVARKLKRLTRKHAAEASFLLQQ 180

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
            L  EEKL KQQ E LK NY KYE+V+ + AD + +RLA HY MR+S D
Sbjct: 181 QLKREEKLHKQQLETLKANYNKYEMVDGIFADNSVQRLADHYRMRISYD 199

[Close]

BLAST of Cla002861 vs. TrEMBL
Match: A0A0D2UT21_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G142700 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 131/229 (57.21%), Postives = 154/229 (67.25%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S K +++  FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SV FIPNY EP N  
Sbjct: 1   MESGKQNEYAAFEEKVRRTVYLDNLSPNVTESVVRTALDQYGTVKSVEFIPNYLEPRNMP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           QCALVEM+  K+AK VIS +S+FPFMM                              SGM
Sbjct: 61  QCALVEMEKEKQAKVVISTLSEFPFMM------------------------------SGM 120

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRPVRAR A  EMF DRP KPGR+I   WL+  DPDFEVA K+K L ++H  E      H
Sbjct: 121 PRPVRARAAVAEMFGDRPRKPGRQIRIRWLDTADPDFEVASKLKQLVKRHATETAVMLKH 180

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
            L +EEKLAKQQ E LK NYKKYE+++S+MADG ARRLA+ YN+RVSDD
Sbjct: 181 QLEKEEKLAKQQGETLKANYKKYEMIDSLMADGAARRLARCYNLRVSDD 199

[Close]

BLAST of Cla002861 vs. NCBI nr
Match: gi|659081732|ref|XP_008441485.1| (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 1.8e-87
Identity = 174/229 (75.98%), Postives = 184/229 (80.35%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QF MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           QCALVEMKD KEAKSVI+VI+QFPFMM                              SGM
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMM------------------------------SGM 120

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRPVRARPAE EMFDDRPVKPGRKISF WLE DDPDFEVA++IK LT+KHVAE       
Sbjct: 121 PRPVRARPAEAEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQ 180

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
           HLAEEEKLAKQQQE L+GNYKKYEIV+SVMADGTARRLAK+YNMRVSDD
Sbjct: 181 HLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of Cla002861 vs. NCBI nr
Match: gi|449441282|ref|XP_004138411.1| (PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus])

HSP 1 Score: 330.5 bits (846), Expect = 2.3e-87
Identity = 174/229 (75.98%), Postives = 184/229 (80.35%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QF MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           QCALVEMKD KEAKSVI+VI+QFPFMM                              SGM
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMM------------------------------SGM 120

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRPVRARPAEVEMFDDRPVKPGRKISF WLE DDPDFEVA++IK L++KHVAE       
Sbjct: 121 PRPVRARPAEVEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQ 180

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
           H+AEEEKLAKQQQE LKGNYKKYEIV+SVMADGTARRLAKHYNMR+SDD
Sbjct: 181 HMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD 199

[Close]

BLAST of Cla002861 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 254.2 bits (648), Expect = 2.1e-64
Identity = 129/229 (56.33%), Postives = 160/229 (69.87%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S   +++ +FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 61  MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 120

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           +CALVEM    EA+++IS ++ +PFMM                              SGM
Sbjct: 121 RCALVEMAKQSEAEAIISDMNNYPFMM------------------------------SGM 180

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRP RARPAEVEMFDDRP+KPGR+I   WL+K+DPDFEVAKK+K L +KH +E      +
Sbjct: 181 PRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDPDFEVAKKLKHLVRKHASEASFMLKN 240

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
            L EEEKLAKQQ E LK NYKKYE+++SV+ADG ARRLA+HYN  VSDD
Sbjct: 241 QLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAARRLARHYNFNVSDD 259

[Close]

BLAST of Cla002861 vs. NCBI nr
Match: gi|225438281|ref|XP_002269083.1| (PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera])

HSP 1 Score: 254.2 bits (648), Expect = 2.1e-64
Identity = 129/229 (56.33%), Postives = 160/229 (69.87%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S   +++ +FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 1   MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           +CALVEM    EA+++IS ++ +PFMM                              SGM
Sbjct: 61  RCALVEMAKQSEAEAIISDMNNYPFMM------------------------------SGM 120

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRP RARPAEVEMFDDRP+KPGR+I   WL+K+DPDFEVAKK+K L +KH +E      +
Sbjct: 121 PRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDPDFEVAKKLKHLVRKHASEASFMLKN 180

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
            L EEEKLAKQQ E LK NYKKYE+++SV+ADG ARRLA+HYN  VSDD
Sbjct: 181 QLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAARRLARHYNFNVSDD 199

[Close]

BLAST of Cla002861 vs. NCBI nr
Match: gi|590655353|ref|XP_007033963.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 253.4 bits (646), Expect = 3.6e-64
Identity = 134/229 (58.52%), Postives = 159/229 (69.43%), Query Frame = 1


Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS +  ++  FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SVHFIPNY EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKSQFPFMISGM 120
           QCALVEM+  K+ + VIS ISQFPFMM                              SGM
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMM------------------------------SGM 120

Query: 121 PRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAE------H 180
           PRPVRAR A+VEMF DRP +PGR+I F WL+  DPDFEVA K+K L ++H  E      H
Sbjct: 121 PRPVRARAAKVEMFSDRPRQPGRRIHFRWLDPADPDFEVANKLKHLAKRHATETAVMLKH 180

Query: 181 HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD 224
            L +EEKLAKQQ EALK NYKKYE+++S+MADGTARRLA+ Y++RVSDD
Sbjct: 181 QLEKEEKLAKQQGEALKANYKKYEMIDSLMADGTARRLARRYDLRVSDD 199

The following BLAST results are available for this feature:

BLAST of Cla002861 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE7_CUCSA	1.6e-87	75.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1	[more]
D7SWK8_VITVI	1.5e-64	56.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=...	[more]
A0A061EIN5_THECC	2.5e-64	58.52	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1	[more]
A0A067L601_JATCU	8.8e-62	55.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1	[more]
A0A0D2UT21_GOSRA	1.5e-61	57.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G142700 PE=4 SV=1	[more]

BLAST of Cla002861 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081732\|ref\|XP_008441485.1\|	1.8e-87	75.98	PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]	[more]
gi\|449441282\|ref\|XP_004138411.1\|	2.3e-87	75.98	PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus]	[more]
gi\|296082652\|emb\|CBI21657.3\|	2.1e-64	56.33	unnamed protein product [Vitis vinifera]	[more]
gi\|225438281\|ref\|XP_002269083.1\|	2.1e-64	56.33	PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera]	[more]
gi\|590655353\|ref\|XP_007033963.1\|	3.6e-64	58.52	RNA-binding family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0032991	macromolecular complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU28770	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU64327	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002861	Cla002861.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU28770	WMU28770	transcribed_cluster
WMU64327	WMU64327	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..78 score: 1.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..97 score: 1.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 18..101 score: 11
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 13..93 score: 5.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 9..95 score: 1.14
None	No IPR available	PANTHER	PTHR36309	FAMILY NOT NAMED	coord: 8..96 score: 1.2E-75coord: 127..223 score: 1.2
None	No IPR available	PANTHER	PTHR36309:SF1	SUBFAMILY NOT NAMED	coord: 8..96 score: 1.2E-75coord: 127..223 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002861	Cla97C08G147710	Watermelon (97103) v2	wmwmbB106
Cla002861	ClCG08G004710	Watermelon (Charleston Gray)	wcgwmB405
Cla002861	Lsi08G003730	Bottle gourd (USVL1VR-Ls)	lsiwmB474
Cla002861	Bhi04G001619	Wax gourd	wgowmB324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002861	Melon (DHL92) v3.5.1	mewmB313