Cla002860 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002860
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RING zinc finger protein-like (AHRD V1 *- B6U8G9_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type
Location	Chr8 : 14136481 .. 14137278 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATTTTGCTTCCAACTGTGTGGCTGGATGTGCTGGACTAACAAGCAGTTCCCGAAAATCGTCTCATACTGCCACAGAGTGTTCGGATGACGAGCTATCTTCAGATGGTAGGGAGGAAGTGCTAGAGTGTCCAATATGTTGGGAATCCTTCAACATTGTTGAGAATGTGCCCCATGTTTTATGGTGTGGCCATACACTCTGCAAGAATTGCATCTTGGGATTGCAGTGGGCTGTGGTGAAGTTTCCGACATTACCGGTCCAGCTTCCACTTTTTATATCTTGCCCCTGGTGCAACCTCTTATCCTTCCGCCTAGTTTATAAAGGAAACCTCAAATTCCCTTGCAAGAATTACTTCCTTTTGTGGATGGTAGAGAACATAAACGTCGAAAGAGTTAAATCCCATTCTGCATTCTCTGGGGATCAACTAGTCTTTCCAGTGAGCGGTACTTCATCCAGGGGTAATCAAGTCAGTCACAATAACCTTAGGAGGGGACACCATGTTCGTCAATTAGATTCACAAGGACCAAACAATGCCAATAGCCATTTCCATAGCTTCAATCTGGAGAGGCTTCAATCTTCTCTCCGCAAATTGCTTGTTTTCTTTGTTCACTTGACAGCCAAGTTTCCATTGGTGATCATCTTCCTCCTGATCGTCTTATATGCTGTGCCTGCCAGTGCAGCAATCTTGGCTCTGTACGTACTAGTCACGGTCCTTTTTGCTCTCCCATCGTTTCTCATATTGTATTTTGCTTACCCTAGTCTGGATTGGTTGATGAGGGAGATCATCACTTAA

mRNA sequence

ATGTGGAATTTTGCTTCCAACTGTGTGGCTGGATGTGCTGGACTAACAAGCAGTTCCCGAAAATCGTCTCATACTGCCACAGAGTGTTCGGATGACGAGCTATCTTCAGATGGTAGGGAGGAAGTGCTAGAGTGTCCAATATGTTGGGAATCCTTCAACATTGTTGAGAATGTGCCCCATGTTTTATGGTGTGGCCATACACTCTGCAAGAATTGCATCTTGGGATTGCAGTGGGCTGTGGTGAAGTTTCCGACATTACCGGTCCAGCTTCCACTTTTTATATCTTGCCCCTGGTGCAACCTCTTATCCTTCCGCCTAGTTTATAAAGGAAACCTCAAATTCCCTTGCAAGAATTACTTCCTTTTGTGGATGGTAGAGAACATAAACGTCGAAAGAGTTAAATCCCATTCTGCATTCTCTGGGGATCAACTAGTCTTTCCAGTGAGCGGTACTTCATCCAGGGGTAATCAAGTCAGTCACAATAACCTTAGGAGGGGACACCATGTTCGTCAATTAGATTCACAAGGACCAAACAATGCCAATAGCCATTTCCATAGCTTCAATCTGGAGAGGCTTCAATCTTCTCTCCGCAAATTGCTTGTTTTCTTTGTTCACTTGACAGCCAAGTTTCCATTGGTGATCATCTTCCTCCTGATCGTCTTATATGCTGTGCCTGCCAGTGCAGCAATCTTGGCTCTGTACGTACTAGTCACGGTCCTTTTTGCTCTCCCATCGTTTCTCATATTGTATTTTGCTTACCCTAGTCTGGATTGGTTGATGAGGGAGATCATCACTTAA

Coding sequence (CDS)

ATGTGGAATTTTGCTTCCAACTGTGTGGCTGGATGTGCTGGACTAACAAGCAGTTCCCGAAAATCGTCTCATACTGCCACAGAGTGTTCGGATGACGAGCTATCTTCAGATGGTAGGGAGGAAGTGCTAGAGTGTCCAATATGTTGGGAATCCTTCAACATTGTTGAGAATGTGCCCCATGTTTTATGGTGTGGCCATACACTCTGCAAGAATTGCATCTTGGGATTGCAGTGGGCTGTGGTGAAGTTTCCGACATTACCGGTCCAGCTTCCACTTTTTATATCTTGCCCCTGGTGCAACCTCTTATCCTTCCGCCTAGTTTATAAAGGAAACCTCAAATTCCCTTGCAAGAATTACTTCCTTTTGTGGATGGTAGAGAACATAAACGTCGAAAGAGTTAAATCCCATTCTGCATTCTCTGGGGATCAACTAGTCTTTCCAGTGAGCGGTACTTCATCCAGGGGTAATCAAGTCAGTCACAATAACCTTAGGAGGGGACACCATGTTCGTCAATTAGATTCACAAGGACCAAACAATGCCAATAGCCATTTCCATAGCTTCAATCTGGAGAGGCTTCAATCTTCTCTCCGCAAATTGCTTGTTTTCTTTGTTCACTTGACAGCCAAGTTTCCATTGGTGATCATCTTCCTCCTGATCGTCTTATATGCTGTGCCTGCCAGTGCAGCAATCTTGGCTCTGTACGTACTAGTCACGGTCCTTTTTGCTCTCCCATCGTTTCTCATATTGTATTTTGCTTACCCTAGTCTGGATTGGTTGATGAGGGAGATCATCACTTAA

Protein sequence

MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPHVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYFLLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNANSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVLFALPSFLILYFAYPSLDWLMREIIT

Homology

[Close]

BLAST of Cla002860 vs. Swiss-Prot
Match: TRI32_MOUSE (E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 9.0e-06
Identity = 26/78 (33.33%), Postives = 38/78 (48.72%), Query Frame = 1


Query: 26  ATECSDDELSSDGREEVLECPICWESFNIVENVPHVLWCGHTLCKNCILGLQWAVVKFPT 85
           A   +   L+ D   EVLECPIC ESF   +  P +L CGHT+C+ C+  L  + +    
Sbjct: 2   AAAAAASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN--- 61

Query: 86  LPVQLPLFISCPWCNLLS 104
                   + CP+C+ ++
Sbjct: 62  -------GVRCPFCSKIT 69

[Close]

BLAST of Cla002860 vs. TrEMBL
Match: A0A0A0K8G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042350 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 9.9e-153
Identity = 264/265 (99.62%), Postives = 264/265 (99.62%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNCVAGCAGL SSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH
Sbjct: 1   MWNFASNCVAGCAGLKSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120

Query: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA 180
           LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA
Sbjct: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA 180

Query: 181 NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240
           NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL
Sbjct: 181 NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240

Query: 241 FALPSFLILYFAYPSLDWLMREIIT 266
           FALPSFLILYFAYPSLDWLMREIIT
Sbjct: 241 FALPSFLILYFAYPSLDWLMREIIT 265

[Close]

BLAST of Cla002860 vs. TrEMBL
Match: M5WTL5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010047mg PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 2.1e-110
Identity = 195/267 (73.03%), Postives = 229/267 (85.77%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS+C+AG  GL + S + +  A+ECSDDE SS  GREE LECPICWESFNIVENVP
Sbjct: 1   MWNFASSCIAGSVGLKNDSLRPTQAASECSDDEGSSVVGREEGLECPICWESFNIVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLP+QLPLFISCPWCNLLSFRLVY+GNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 120

Query: 121 FLLWMVENINVERVKSHSAFSGD-QLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPN 180
           FLLWMVE++N +R+KSHS FSGD   V+P +G +S G+QVSH + RR HH+R ++  G N
Sbjct: 121 FLLWMVESMNGDRIKSHSTFSGDNHAVWPANGNASVGSQVSHTHHRRVHHIRHIEPSGQN 180

Query: 181 NANSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVT 240
           + + + +  ++ERL SSLRK L FFVHLTAKFPLV+IFLLI+LY +PA AAILALY+LVT
Sbjct: 181 HVHVN-NYLSVERLHSSLRKSLFFFVHLTAKFPLVVIFLLIILYVIPACAAILALYILVT 240

Query: 241 VLFALPSFLILYFAYPSLDWLMREIIT 266
           V+FALPSFL+LYFAYPSLDWL+REIIT
Sbjct: 241 VVFALPSFLLLYFAYPSLDWLVREIIT 266

[Close]

BLAST of Cla002860 vs. TrEMBL
Match: A0A0B2PHT9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032019 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 8.2e-107
Identity = 197/268 (73.51%), Postives = 217/268 (80.97%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNC+AG  GL + S K +H+A+ECSDDE S  GREE LECPICWESFNIVENVP+
Sbjct: 1   MWNFASNCIAGTVGLKNDS-KPTHSASECSDDENSVIGREEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVY+GNLKFP KNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYF 120

Query: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRG---HHVRQLDSQGP 180
           LLWMVE++N +R KSHS F GD     +    + G+QVSH NLRRG   H      +Q  
Sbjct: 121 LLWMVESMNGDRGKSHSPFCGDNQQHSIKDNLTMGSQVSHGNLRRGLVRHPETSSSNQYH 180

Query: 181 NNANSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLV 240
            N  +H    N ER    LRK L+FFV LTAKFPLVIIFLLIVLYA+PASAAILALYVLV
Sbjct: 181 GNTGNH---LNTERFHVYLRKSLIFFVQLTAKFPLVIIFLLIVLYAIPASAAILALYVLV 240

Query: 241 TVLFALPSFLILYFAYPSLDWLMREIIT 266
           T+LFALPSFLILYF+YPSLDWL+REIIT
Sbjct: 241 TILFALPSFLILYFSYPSLDWLVREIIT 264

[Close]

BLAST of Cla002860 vs. TrEMBL
Match: C6TIH4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G059100 PE=2 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 8.2e-107
Identity = 197/268 (73.51%), Postives = 217/268 (80.97%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNC+AG  GL + S K +H+A+ECSDDE S  GREE LECPICWESFNIVENVP+
Sbjct: 1   MWNFASNCIAGTVGLKNDS-KPTHSASECSDDENSVIGREEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVY+GNLKFP KNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYF 120

Query: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRG---HHVRQLDSQGP 180
           LLWMVE++N +R KSHS F GD     +    + G+QVSH NLRRG   H      +Q  
Sbjct: 121 LLWMVESMNGDRGKSHSPFCGDNQQHSIKDNLTMGSQVSHGNLRRGLVRHPETSSSNQYH 180

Query: 181 NNANSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLV 240
            N  +H    N ER    LRK L+FFV LTAKFPLVIIFLLIVLYA+PASAAILALYVLV
Sbjct: 181 GNTGNH---LNTERFHVYLRKSLIFFVQLTAKFPLVIIFLLIVLYAIPASAAILALYVLV 240

Query: 241 TVLFALPSFLILYFAYPSLDWLMREIIT 266
           T+LFALPSFLILYF+YPSLDWL+REIIT
Sbjct: 241 TILFALPSFLILYFSYPSLDWLVREIIT 264

[Close]

BLAST of Cla002860 vs. TrEMBL
Match: V4UXG8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012457mg PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.4e-106
Identity = 197/272 (72.43%), Postives = 225/272 (82.72%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS C+AG  GL + S K+S  A+ECSDD++SS   REE LECPICWESFN+VENVP
Sbjct: 1   MWNFASTCLAGNVGLKNDSLKASEAASECSDDDVSSVVSREESLECPICWESFNMVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR+VYKGNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRKNY 120

Query: 121 FLLWMVENINVERVKSHSAFSGD-QLVFPVSGTSSRGNQVSHNNLRRG-HHVRQLDSQGP 180
           FLLWMVE++N +RVKSHS F  D Q     SG+S+ GNQ++  N RRG HH        P
Sbjct: 121 FLLWMVESMNGDRVKSHSGFCEDRQPASSSSGSSTFGNQLNRGNHRRGQHHHHYHHHPEP 180

Query: 181 NNAN-SHFHSFN---LERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILAL 240
             +N  H H+ N   +ER+ SSLRK L+FFVHLTAKFPLV+IFLLIV+YA+PASAAILAL
Sbjct: 181 AGSNRDHLHATNYLTVERIHSSLRKSLIFFVHLTAKFPLVVIFLLIVVYAIPASAAILAL 240

Query: 241 YVLVTVLFALPSFLILYFAYPSLDWLMREIIT 266
           Y+LVT+LFALPSFLILYFAYPSLDWL+REI+T
Sbjct: 241 YILVTILFALPSFLILYFAYPSLDWLVREIVT 272

[Close]

BLAST of Cla002860 vs. NCBI nr
Match: gi|449446247|ref|XP_004140883.1| (PREDICTED: uncharacterized protein LOC101203968 [Cucumis sativus])

HSP 1 Score: 547.4 bits (1409), Expect = 1.4e-152
Identity = 264/265 (99.62%), Postives = 264/265 (99.62%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNCVAGCAGL SSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH
Sbjct: 1   MWNFASNCVAGCAGLKSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120

Query: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA 180
           LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA
Sbjct: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA 180

Query: 181 NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240
           NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL
Sbjct: 181 NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240

Query: 241 FALPSFLILYFAYPSLDWLMREIIT 266
           FALPSFLILYFAYPSLDWLMREIIT
Sbjct: 241 FALPSFLILYFAYPSLDWLMREIIT 265

[Close]

BLAST of Cla002860 vs. NCBI nr
Match: gi|659089886|ref|XP_008445733.1| (PREDICTED: uncharacterized protein LOC103488671 [Cucumis melo])

HSP 1 Score: 535.4 bits (1378), Expect = 5.6e-149
Identity = 257/265 (96.98%), Postives = 262/265 (98.87%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNCVAGCAGL SSSRK+SHTATECSDDELSSDGREEVLECPICWESFNIVENVPH
Sbjct: 1   MWNFASNCVAGCAGLKSSSRKTSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120

Query: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPNNA 180
           LLWMVENINVERVKSHSAFSGD L+FPVSG+SSR NQVSHNNLRRGHHVRQLDSQGPN+A
Sbjct: 121 LLWMVENINVERVKSHSAFSGDPLIFPVSGSSSRVNQVSHNNLRRGHHVRQLDSQGPNSA 180

Query: 181 NSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240
           NSHFH+FNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL
Sbjct: 181 NSHFHNFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVTVL 240

Query: 241 FALPSFLILYFAYPSLDWLMREIIT 266
           FALPSFLILYFAYPSLDWLMREIIT
Sbjct: 241 FALPSFLILYFAYPSLDWLMREIIT 265

[Close]

BLAST of Cla002860 vs. NCBI nr
Match: gi|595940309|ref|XP_007215820.1| (hypothetical protein PRUPE_ppa010047mg [Prunus persica])

HSP 1 Score: 406.8 bits (1044), Expect = 3.0e-110
Identity = 195/267 (73.03%), Postives = 229/267 (85.77%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS+C+AG  GL + S + +  A+ECSDDE SS  GREE LECPICWESFNIVENVP
Sbjct: 1   MWNFASSCIAGSVGLKNDSLRPTQAASECSDDEGSSVVGREEGLECPICWESFNIVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLP+QLPLFISCPWCNLLSFRLVY+GNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 120

Query: 121 FLLWMVENINVERVKSHSAFSGD-QLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPN 180
           FLLWMVE++N +R+KSHS FSGD   V+P +G +S G+QVSH + RR HH+R ++  G N
Sbjct: 121 FLLWMVESMNGDRIKSHSTFSGDNHAVWPANGNASVGSQVSHTHHRRVHHIRHIEPSGQN 180

Query: 181 NANSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVT 240
           + + + +  ++ERL SSLRK L FFVHLTAKFPLV+IFLLI+LY +PA AAILALY+LVT
Sbjct: 181 HVHVN-NYLSVERLHSSLRKSLFFFVHLTAKFPLVVIFLLIILYVIPACAAILALYILVT 240

Query: 241 VLFALPSFLILYFAYPSLDWLMREIIT 266
           V+FALPSFL+LYFAYPSLDWL+REIIT
Sbjct: 241 VVFALPSFLLLYFAYPSLDWLVREIIT 266

[Close]

BLAST of Cla002860 vs. NCBI nr
Match: gi|645249645|ref|XP_008230837.1| (PREDICTED: uncharacterized protein LOC103330072 [Prunus mume])

HSP 1 Score: 405.2 bits (1040), Expect = 8.7e-110
Identity = 196/267 (73.41%), Postives = 229/267 (85.77%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSD-GREEVLECPICWESFNIVENVP 60
           MWNFAS+C+AG  GL + S + +  A+ECSDDE SS  GREE LECPICWESFNIVENVP
Sbjct: 1   MWNFASSCIAGSVGLKNDSLRPTQAASECSDDEGSSVVGREEGLECPICWESFNIVENVP 60

Query: 61  HVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNY 120
           +VLWCGHTLCKNCILGLQWAVVKFPTLP+QLPLFISCPWCNLLSFRLVY+GNLKFP KNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 120

Query: 121 FLLWMVENINVERVKSHSAFSGD-QLVFPVSGTSSRGNQVSHNNLRRGHHVRQLDSQGPN 180
           FLLWMVE++N +RVKSHS FSGD   V+P +G +S G+QVSH + RR HH+R ++  G N
Sbjct: 121 FLLWMVESMNGDRVKSHSTFSGDNHPVWPANGNASVGSQVSHTHHRRVHHIRHIEPLGQN 180

Query: 181 NANSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLVT 240
           +A  + +  ++ERL SSLRK L FFVHLTAKFPLV+IFLLI+LY +PA AAILALY+L+T
Sbjct: 181 HALVN-NYLSVERLHSSLRKSLFFFVHLTAKFPLVVIFLLIILYVIPACAAILALYILIT 240

Query: 241 VLFALPSFLILYFAYPSLDWLMREIIT 266
           V+FALPSFL+LYFAYPSLDWL+REIIT
Sbjct: 241 VVFALPSFLLLYFAYPSLDWLVREIIT 266

[Close]

BLAST of Cla002860 vs. NCBI nr
Match: gi|359806827|ref|NP_001241055.1| (uncharacterized protein LOC100809368 [Glycine max])

HSP 1 Score: 394.8 bits (1013), Expect = 1.2e-106
Identity = 197/268 (73.51%), Postives = 217/268 (80.97%), Query Frame = 1


Query: 1   MWNFASNCVAGCAGLTSSSRKSSHTATECSDDELSSDGREEVLECPICWESFNIVENVPH 60
           MWNFASNC+AG  GL + S K +H+A+ECSDDE S  GREE LECPICWESFNIVENVP+
Sbjct: 1   MWNFASNCIAGTVGLKNDS-KPTHSASECSDDENSVIGREEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYKGNLKFPCKNYF 120
           VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVY+GNLKFP KNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYF 120

Query: 121 LLWMVENINVERVKSHSAFSGDQLVFPVSGTSSRGNQVSHNNLRRG---HHVRQLDSQGP 180
           LLWMVE++N +R KSHS F GD     +    + G+QVSH NLRRG   H      +Q  
Sbjct: 121 LLWMVESMNGDRGKSHSPFCGDNQQHSIKDNLTMGSQVSHGNLRRGLVRHPETSSSNQYH 180

Query: 181 NNANSHFHSFNLERLQSSLRKLLVFFVHLTAKFPLVIIFLLIVLYAVPASAAILALYVLV 240
            N  +H    N ER    LRK L+FFV LTAKFPLVIIFLLIVLYA+PASAAILALYVLV
Sbjct: 181 GNTGNH---LNTERFHVYLRKSLIFFVQLTAKFPLVIIFLLIVLYAIPASAAILALYVLV 240

Query: 241 TVLFALPSFLILYFAYPSLDWLMREIIT 266
           T+LFALPSFLILYF+YPSLDWL+REIIT
Sbjct: 241 TILFALPSFLILYFSYPSLDWLVREIIT 264

The following BLAST results are available for this feature:

BLAST of Cla002860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRI32_MOUSE	9.0e-06	33.33	E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1 SV=2	[more]

BLAST of Cla002860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8G4_CUCSA	9.9e-153	99.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042350 PE=4 SV=1	[more]
M5WTL5_PRUPE	2.1e-110	73.03	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010047mg PE=4 SV=1	[more]
A0A0B2PHT9_GLYSO	8.2e-107	73.51	Uncharacterized protein OS=Glycine soja GN=glysoja_032019 PE=4 SV=1	[more]
C6TIH4_SOYBN	8.2e-107	73.51	Uncharacterized protein OS=Glycine max GN=GLYMA_13G059100 PE=2 SV=1	[more]
V4UXG8_9ROSI	2.4e-106	72.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012457mg PE=4 SV=1	[more]

BLAST of Cla002860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446247\|ref\|XP_004140883.1\|	1.4e-152	99.62	PREDICTED: uncharacterized protein LOC101203968 [Cucumis sativus]	[more]
gi\|659089886\|ref\|XP_008445733.1\|	5.6e-149	96.98	PREDICTED: uncharacterized protein LOC103488671 [Cucumis melo]	[more]
gi\|595940309\|ref\|XP_007215820.1\|	3.0e-110	73.03	hypothetical protein PRUPE_ppa010047mg [Prunus persica]	[more]
gi\|645249645\|ref\|XP_008230837.1\|	8.7e-110	73.41	PREDICTED: uncharacterized protein LOC103330072 [Prunus mume]	[more]
gi\|359806827\|ref\|NP_001241055.1\|	1.2e-106	73.51	uncharacterized protein LOC100809368 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027370	Znf-RING_LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU13287	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU45832	watermelon EST collection version 2.0	transcribed_cluster
WMU72386	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002860	Cla002860.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU13287	WMU13287	transcribed_cluster
WMU72386	WMU72386	transcribed_cluster
WMU45832	WMU45832	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 45..100 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 38..100 score: 4.3
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73 scor
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 45..97 score: 5.
None	No IPR available	PANTHER	PTHR13139	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 18..265 score: 5.4E
None	No IPR available	PANTHER	PTHR13139:SF47	SUBFAMILY NOT NAMED	coord: 18..265 score: 5.4E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 40..102 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002860	Cla97C08G147700	Watermelon (97103) v2	wmwmbB106
Cla002860	MELO3C011654	Melon (DHL92) v3.5.1	mewmB305
Cla002860	ClCG08G004690	Watermelon (Charleston Gray)	wcgwmB405

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002860	Wax gourd	wgowmB324
Cla002860	Melon (DHL92) v3.5.1	mewmB313
Cla002860	Bottle gourd (USVL1VR-Ls)	lsiwmB474