Cla002778 (gene) Watermelon (97103) v1

Overview
NameCla002778
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR007592 Protein of unknown function DUF573
LocationChr4 : 698048 .. 698650 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAAGAAAAAGAGGGAGAAAAAAGCTCATTGGGATCAGAAAAGAAGGAAAGGAGGAGGAAGAAGAGTTTGTTTGAATGGAGTAAAGGAGAAGAGGTAAATCTAGTGAAGAAGCTGATTGAGTTCCGTACAAAGAAGATGGGTGACGAAGAATTTTATCCGTTTTTGAGAAACGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAACGAATATTTGGAGAAGAAGTTGGAGTTGAGAAAGATGAGAATCAAACATTTGAAATACGAGAATGATGATGAGATTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACAACTGGAAGCACTTCTACCTCTAAAGCGTTGGATGTGTGCAGTAGGAGTTATTTTGAAGGGTTTTTTGATGGCCATGGCCTTCATGTACAACTATTTACGCCATCTTTTCTCCATTCAACCAACAAGGATATCCACCATTTGTTTTCTCTTCAAAATCATCACTTCTTAATCAAAGCTAATTTGAAGGCTCAACTTGCCCAACTAAAGTACCACATCATTCAACATCCTTACAATAATCCTACCAATCTATAA

mRNA sequence

ATGGGAGAAGAAAAAGAGGGAGAAAAAAGCTCATTGGGATCAGAAAAGAAGGAAAGGAGGAGGAAGAAGAGTTTGTTTGAATGGAGTAAAGGAGAAGAGGTAAATCTAGTGAAGAAGCTGATTGAGTTCCGTACAAAGAAGATGGGTGACGAAGAATTTTATCCGTTTTTGAGAAACGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAACGAATATTTGGAGAAGAAGTTGGAGTTGAGAAAGATGAGAATCAAACATTTGAAATACGAGAATGATGATGAGATTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACAACTGGAAGCACTTCTACCTCTAAAGCGTTGGATGTGTGCAGTAGGAGTTATTTTGAAGGGTTTTTTGATGGCCATGGCCTTCATGTACAACTATTTACGCCATCTTTTCTCCATTCAACCAACAAGGATATCCACCATTTGTTTTCTCTTCAAAATCATCACTTCTTAATCAAAGCTAATTTGAAGGCTCAACTTGCCCAACTAAAGTACCACATCATTCAACATCCTTACAATAATCCTACCAATCTATAA

Coding sequence (CDS)

ATGGGAGAAGAAAAAGAGGGAGAAAAAAGCTCATTGGGATCAGAAAAGAAGGAAAGGAGGAGGAAGAAGAGTTTGTTTGAATGGAGTAAAGGAGAAGAGGTAAATCTAGTGAAGAAGCTGATTGAGTTCCGTACAAAGAAGATGGGTGACGAAGAATTTTATCCGTTTTTGAGAAACGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAACGAATATTTGGAGAAGAAGTTGGAGTTGAGAAAGATGAGAATCAAACATTTGAAATACGAGAATGATGATGAGATTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACAACTGGAAGCACTTCTACCTCTAAAGCGTTGGATGTGTGCAGTAGGAGTTATTTTGAAGGGTTTTTTGATGGCCATGGCCTTCATGTACAACTATTTACGCCATCTTTTCTCCATTCAACCAACAAGGATATCCACCATTTGTTTTCTCTTCAAAATCATCACTTCTTAATCAAAGCTAATTTGAAGGCTCAACTTGCCCAACTAAAGTACCACATCATTCAACATCCTTACAATAATCCTACCAATCTATAA

Protein sequence

MGEEKEGEKSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYPFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIFELSNRLWGEVETTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQNHHFLIKANLKAQLAQLKYHIIQHPYNNPTNL
Homology
[Close]
BLAST of Cla002778 vs. TrEMBL
Match: A0A0A0KPQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G078280 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.8e-43
Identity = 104/206 (50.49%), Postives = 132/206 (64.08%), Query Frame = 1 

Query: 1   MGEEKEGEKSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYPFLRNG 60
           M E KEG K S GS KK+RR  KSLFEWSKGEE+NL+KKL+EF TK +  EEFYPFLRNG
Sbjct: 1   MEEGKEGRKRSTGSGKKKRR--KSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNG 60

Query: 61  SLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEI-------FELSNRLWG 120
           SLAEVS+ QIF KIQ+LK EYL++KLELRKMR +++K E+DD+        FELSN +WG
Sbjct: 61  SLAEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVWG 120

Query: 121 EVETTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQNHHFL 180
           +V+ T   S SK L+                           +  KDI  LF+L++  FL
Sbjct: 121 KVDETERASISKVLE--------------------------DAAKKDIDRLFNLEHQAFL 178

Query: 181 IKANLKAQLAQLKYHIIQHPYNNPTN 200
            K+ L ++L +LK  IIQ P  +PT+
Sbjct: 181 FKSKLVSKLVKLKNDIIQAPITDPTH 178

[Close]
BLAST of Cla002778 vs. TrEMBL
Match: A0A0V0I297_SOLCH (Putative mediator-associated protein 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 36/132 (27.27%), Postives = 71/132 (53.79%), Query Frame = 1 

Query: 2   GEEKEGEKSSLGSEKKERRR---------KKSLFE--WSKGEEVNLVKKLIEFRTKKMGD 61
           GE KE ++S    EK+             K+ LF+  WS+ +E+ ++K + ++R+KK  D
Sbjct: 141 GEAKESKRSKKKPEKQIETPVSKTPTDDVKRQLFQRLWSEDDEIAILKGMTDYRSKKKAD 200

Query: 62  -----EEFYPFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIF 118
                  F+ F++     +VSK Q+ +KI++LK +Y     + +K + +     ++ + +
Sbjct: 201 PVADLSAFHEFIKKSLHVDVSKAQLQDKIRRLKKKYENNAGKEKKGKERTFSKPHEQKAY 260

[Close]
BLAST of Cla002778 vs. TrEMBL
Match: M1D1F7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030831 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 36/132 (27.27%), Postives = 71/132 (53.79%), Query Frame = 1 

Query: 2   GEEKEGEKSSLGSEKKERRR---------KKSLFE--WSKGEEVNLVKKLIEFRTKKMGD 61
           GE KE ++S    EK+             K+ LF+  WS+ +E+ ++K + ++R+KK  D
Sbjct: 145 GEAKESKRSKKKPEKQIETPVSKTPTDDVKRQLFQRLWSEDDEIAILKGMTDYRSKKKAD 204

Query: 62  -----EEFYPFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIF 118
                  F+ F++     +VSK Q+ +KI++LK +Y     + +K + +     ++ + +
Sbjct: 205 PVADLSAFHEFIKKSLHVDVSKAQLQDKIRRLKKKYENNAGKEKKGKERTFSKPHEQKAY 264

[Close]
BLAST of Cla002778 vs. TrEMBL
Match: A0A022R526_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a007745mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 1 

Query: 5   KEGEKSSLGSEKKERRRKKSLFE--WSKGEEVNLVKKLIEFRTKKMGD-----EEFYPFL 64
           K   ++S  + K E   KK LF   W++ +E+ L+K L +++ KK  D     + F+ F+
Sbjct: 151 KADPENSEANSKDET--KKQLFHRLWNEDDEIALLKGLADYKQKKKADPYAELDSFHLFI 210

Query: 65  RNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIFELSNRLWGEVET 124
                 EV+K Q+ +KI++LK +Y   K + +  + K     ++ +I+ELS  +WG VE 
Sbjct: 211 GENLHVEVTKAQLQDKIRRLKKKYETNKTKDQPNKDKSFSKPHEKKIYELSEPVWGNVEK 270

[Close]
BLAST of Cla002778 vs. TrEMBL
Match: W9RZS0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019355 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 39/132 (29.55%), Postives = 68/132 (51.52%), Query Frame = 1 

Query: 3   EEKEGEKSSLGSEKKERRRKKSLFE--WSKGEEVNLVKKLIEFRTKKMGD------EEFY 62
           EE+E  K S G + K+      LF+  WS+ +E+ ++K LI++  K+ GD        F+
Sbjct: 144 EEQEESKKSGGDDSKK------LFQRLWSEEDEIVILKGLIDYAAKRGGDPAATDMNTFH 203

Query: 63  PFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIFELSNRLWGE 122
            F++     EV+K Q+ NK+++LK +YL      +    K     ++   FELS ++WG 
Sbjct: 204 DFIKKSLHVEVTKSQLSNKVRKLKKKYLNNAARKKYNPTK----PHEQNAFELSKKIWGG 263

Query: 123 VETTGSTSTSKA 127
             +    S+ K+
Sbjct: 264 RGSRAGVSSPKS 265

[Close]
BLAST of Cla002778 vs. NCBI nr
Match: gi|700194534|gb|KGN49711.1| (hypothetical protein Csa_5G078280 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 4.1e-43
Identity = 104/206 (50.49%), Postives = 132/206 (64.08%), Query Frame = 1 

Query: 1   MGEEKEGEKSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYPFLRNG 60
           M E KEG K S GS KK+RR  KSLFEWSKGEE+NL+KKL+EF TK +  EEFYPFLRNG
Sbjct: 1   MEEGKEGRKRSTGSGKKKRR--KSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNG 60

Query: 61  SLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEI-------FELSNRLWG 120
           SLAEVS+ QIF KIQ+LK EYL++KLELRKMR +++K E+DD+        FELSN +WG
Sbjct: 61  SLAEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVWG 120

Query: 121 EVETTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQNHHFL 180
           +V+ T   S SK L+                           +  KDI  LF+L++  FL
Sbjct: 121 KVDETERASISKVLE--------------------------DAAKKDIDRLFNLEHQAFL 178

Query: 181 IKANLKAQLAQLKYHIIQHPYNNPTN 200
            K+ L ++L +LK  IIQ P  +PT+
Sbjct: 181 FKSKLVSKLVKLKNDIIQAPITDPTH 178

[Close]
BLAST of Cla002778 vs. NCBI nr
Match: gi|460384480|ref|XP_004237939.1| (PREDICTED: mediator-associated protein 1-like [Solanum lycopersicum])

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 37/132 (28.03%), Postives = 72/132 (54.55%), Query Frame = 1 

Query: 2   GEEKEGEKSSLGSEKKERRR---------KKSLFE--WSKGEEVNLVKKLIEFRTKKMGD 61
           GE KE ++S   SEK+             K+ LF+  WS+ +E+ ++K + ++R+KK  D
Sbjct: 139 GEAKESKRSKKKSEKQIETPVAKTPTDDVKRQLFQRLWSEDDEIAILKGMTDYRSKKKAD 198

Query: 62  -----EEFYPFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIF 118
                  F+ F++     +VSK Q+ +KI++LK +Y     + +K + +     ++ + +
Sbjct: 199 PVADLSAFHDFIKKSLHVDVSKAQLQDKIRRLKKKYENNAGKEKKGKERTFSKPHEQKAY 258

[Close]
BLAST of Cla002778 vs. NCBI nr
Match: gi|970025246|ref|XP_015073937.1| (PREDICTED: mediator-associated protein 1-like [Solanum pennellii])

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 36/132 (27.27%), Postives = 71/132 (53.79%), Query Frame = 1 

Query: 2   GEEKEGEKSSLGSEKKERRR---------KKSLFE--WSKGEEVNLVKKLIEFRTKKMGD 61
           GE KE ++S    EK+             K+ LF+  WS+ +E+ ++K + ++R+KK  D
Sbjct: 139 GEAKESKRSKKKPEKQIETPVAKTPTDDVKRQLFQRLWSEDDEIAILKGMTDYRSKKKAD 198

Query: 62  -----EEFYPFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIF 118
                  F+ F++     +VSK Q+ +KI++LK +Y     + +K + +     ++ + +
Sbjct: 199 PVADLSAFHDFIKKSLHVDVSKAQLQDKIRRLKKKYENNAGKEKKGKERTFSKPHEQKAY 258

[Close]
BLAST of Cla002778 vs. NCBI nr
Match: gi|565395317|ref|XP_006363288.1| (PREDICTED: mediator-associated protein 1-like [Solanum tuberosum])

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 36/132 (27.27%), Postives = 71/132 (53.79%), Query Frame = 1 

Query: 2   GEEKEGEKSSLGSEKKERRR---------KKSLFE--WSKGEEVNLVKKLIEFRTKKMGD 61
           GE KE ++S    EK+             K+ LF+  WS+ +E+ ++K + ++R+KK  D
Sbjct: 145 GEAKESKRSKKKPEKQIETPVSKTPTDDVKRQLFQRLWSEDDEIAILKGMTDYRSKKKAD 204

Query: 62  -----EEFYPFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIF 118
                  F+ F++     +VSK Q+ +KI++LK +Y     + +K + +     ++ + +
Sbjct: 205 PVADLSAFHEFIKKSLHVDVSKAQLQDKIRRLKKKYENNAGKEKKGKERTFSKPHEQKAY 264

[Close]
BLAST of Cla002778 vs. NCBI nr
Match: gi|848883408|ref|XP_012842004.1| (PREDICTED: mediator-associated protein 1-like [Erythranthe guttata])

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 1 

Query: 5   KEGEKSSLGSEKKERRRKKSLFE--WSKGEEVNLVKKLIEFRTKKMGD-----EEFYPFL 64
           K   ++S  + K E   KK LF   W++ +E+ L+K L +++ KK  D     + F+ F+
Sbjct: 151 KADPENSEANSKDET--KKQLFHRLWNEDDEIALLKGLADYKQKKKADPYAELDSFHLFI 210

Query: 65  RNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIFELSNRLWGEVET 124
                 EV+K Q+ +KI++LK +Y   K + +  + K     ++ +I+ELS  +WG VE 
Sbjct: 211 GENLHVEVTKAQLQDKIRRLKKKYETNKTKDQPNKDKSFSKPHEKKIYELSEPVWGNVEK 270

The following BLAST results are available for this feature:
BLAST of Cla002778 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPQ5_CUCSA2.8e-4350.49Uncharacterized protein OS=Cucumis sativus GN=Csa_5G078280 PE=4 SV=1[more]
A0A0V0I297_SOLCH2.8e-0627.27Putative mediator-associated protein 1-like OS=Solanum chacoense PE=4 SV=1[more]
M1D1F7_SOLTU2.8e-0627.27Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030831 PE=4 SV=1[more]
A0A022R526_ERYGU2.8e-0630.71Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a007745mg PE=4 SV=1[more]
W9RZS0_9ROSA3.6e-0629.55Uncharacterized protein OS=Morus notabilis GN=L484_019355 PE=4 SV=1[more]
BLAST of Cla002778 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194534|gb|KGN49711.1|4.1e-4350.49hypothetical protein Csa_5G078280 [Cucumis sativus][more]
gi|460384480|ref|XP_004237939.1|1.0e-0628.03PREDICTED: mediator-associated protein 1-like [Solanum lycopersicum][more]
gi|970025246|ref|XP_015073937.1|4.0e-0627.27PREDICTED: mediator-associated protein 1-like [Solanum pennellii][more]
gi|565395317|ref|XP_006363288.1|4.0e-0627.27PREDICTED: mediator-associated protein 1-like [Solanum tuberosum][more]
gi|848883408|ref|XP_012842004.1|4.0e-0630.71PREDICTED: mediator-associated protein 1-like [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007592GEBP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002778Cla002778.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007592Protein of unknown function DUF573PFAMPF04504DUF573coord: 28..113
score: 2.1
NoneNo IPR availableunknownCoilCoilcoord: 74..94
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002778Cla97C04G068470Watermelon (97103) v2wmwmbB298
Cla002778ClCG04G000040Watermelon (Charleston Gray)wcgwmB262
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002778Watermelon (97103) v2wmwmbB294
Cla002778Wax gourdwgowmB456
Cla002778Cucurbita maxima (Rimu)cmawmB636
Cla002778Cucurbita maxima (Rimu)cmawmB840
Cla002778Cucurbita moschata (Rifu)cmowmB627
Cla002778Cucurbita moschata (Rifu)cmowmB829
Cla002778Melon (DHL92) v3.5.1mewmB582
Cla002778Watermelon (Charleston Gray)wcgwmB259
Cla002778Cucurbita pepo (Zucchini)cpewmB090
Cla002778Cucurbita pepo (Zucchini)cpewmB490
Cla002778Bottle gourd (USVL1VR-Ls)lsiwmB150
Cla002778Silver-seed gourdcarwmB0184
Cla002778Silver-seed gourdcarwmB0278