Cla002629 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002629
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	F-box/LRR-repeat protein At5g63520 (AHRD V1 ***- D7MPP7_ARALL); contains Interpro domain(s) IPR001810 Cyclin-like F-box
Location	Chr3 : 3942342 .. 3942587 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTGCCCTCGGAGCAGGTGGAGTAAGCGACGGAGGATTTTCTCCGATGAACGACGACATTCTTCACAACATCTTCGGCCGGCTTCCTGCTCAATCCTTCGCAGCAGCGGCCTACGTTTGTAAAACTTGGAACTCTGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTGAATCCCTCTCTTCACGTTCGCCTCGTTTCTCTTTTTCTTTATTTGGTCAATTAG

mRNA sequence

ATGGATACTGCCCTCGGAGCAGGTGGAGTAAGCGACGGAGGATTTTCTCCGATGAACGACGACATTCTTCACAACATCTTCGGCCGGCTTCCTGCTCAATCCTTCGCAGCAGCGGCCTACGTTTGTAAAACTTGGAACTCTGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTGAATCCCTCTCTTCACGTTCGCCTCGTTTCTCTTTTTCTTTATTTGGTCAATTAG

Coding sequence (CDS)

ATGGATACTGCCCTCGGAGCAGGTGGAGTAAGCGACGGAGGATTTTCTCCGATGAACGACGACATTCTTCACAACATCTTCGGCCGGCTTCCTGCTCAATCCTTCGCAGCAGCGGCCTACGTTTGTAAAACTTGGAACTCTGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTGAATCCCTCTCTTCACGTTCGCCTCGTTTCTCTTTTTCTTTATTTGGTCAATTAG

Protein sequence

MDTALGAGGVSDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVSLFLYLVN

Homology

[Close]

BLAST of Cla002629 vs. Swiss-Prot
Match: FBL91_ARATH (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-10
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 18 MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNP 67
          MN+D+LHNI  RLPA+SFA A+ V + W+SVCNRIL RPK  SA S NP
Sbjct: 36 MNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNP 84

[Close]

BLAST of Cla002629 vs. TrEMBL
Match: A0A061FY98_THECC (F-box family protein, putative isoform 3 OS=Theobroma cacao GN=TCM_014665 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-13
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 14 GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLV 73
          GF  MN D+L NI  RLPA SFA+AA V K WN+ CNR+L RPK SSA+SLNPS  V L 
Sbjct: 21 GFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQ 80

Query: 74 SLF 77
           +F
Sbjct: 81 EVF 83

[Close]

BLAST of Cla002629 vs. TrEMBL
Match: A0A061G007_THECC (F-box family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014665 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-13
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 14 GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLV 73
          GF  MN D+L NI  RLPA SFA+AA V K WN+ CNR+L RPK SSA+SLNPS  V L 
Sbjct: 21 GFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQ 80

Query: 74 SLF 77
           +F
Sbjct: 81 EVF 83

[Close]

BLAST of Cla002629 vs. TrEMBL
Match: A0A061G647_THECC (F-box family protein, putative isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_014665 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-13
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 14  GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLV 73
           GF  MN D+L NI  RLPA SFA+AA V K WN+ CNR+L RPK SSA+SLNPS  V L 
Sbjct: 56  GFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQ 115

Query: 74  SLF 77
            +F
Sbjct: 116 EVF 118

[Close]

BLAST of Cla002629 vs. TrEMBL
Match: A0A061FZ19_THECC (F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_014665 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-13
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 14 GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLV 73
          GF  MN D+L NI  RLPA SFA+AA V K WN+ CNR+L RPK SSA+SLNPS  V L 
Sbjct: 21 GFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQ 80

Query: 74 SLF 77
           +F
Sbjct: 81 EVF 83

[Close]

BLAST of Cla002629 vs. TrEMBL
Match: M5WDG3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004403mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-12
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 13 GGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPS 68
          G  SP+NDD+LHNI  RLPA SFA+AA V K+WN +C+RIL RPK +SA+SL+PS
Sbjct: 26 GLLSPINDDLLHNILSRLPALSFASAACVSKSWNQICSRILSRPKLASALSLHPS 80

[Close]

BLAST of Cla002629 vs. NCBI nr
Match: gi|502133306|ref|XP_004501713.1| (PREDICTED: F-box/LRR-repeat protein At5g63520 [Cicer arietinum])

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-13
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1


Query: 14 GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHV 71
          G S +NDD+LHNI  RLPA +FA+A+ V K+WNSVCNRI+ RPK SSA+SLNP+L V
Sbjct: 26 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRV 82

[Close]

BLAST of Cla002629 vs. NCBI nr
Match: gi|590670289|ref|XP_007038013.1| (F-box family protein, putative isoform 4, partial [Theobroma cacao])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 14  GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLV 73
           GF  MN D+L NI  RLPA SFA+AA V K WN+ CNR+L RPK SSA+SLNPS  V L 
Sbjct: 56  GFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQ 115

Query: 74  SLF 77
            +F
Sbjct: 116 EVF 118

[Close]

BLAST of Cla002629 vs. NCBI nr
Match: gi|590670285|ref|XP_007038012.1| (F-box family protein, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 14 GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLV 73
          GF  MN D+L NI  RLPA SFA+AA V K WN+ CNR+L RPK SSA+SLNPS  V L 
Sbjct: 21 GFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQ 80

Query: 74 SLF 77
           +F
Sbjct: 81 EVF 83

[Close]

BLAST of Cla002629 vs. NCBI nr
Match: gi|590670281|ref|XP_007038011.1| (F-box family protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 14 GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLV 73
          GF  MN D+L NI  RLPA SFA+AA V K WN+ CNR+L RPK SSA+SLNPS  V L 
Sbjct: 21 GFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQ 80

Query: 74 SLF 77
           +F
Sbjct: 81 EVF 83

[Close]

BLAST of Cla002629 vs. NCBI nr
Match: gi|590670277|ref|XP_007038010.1| (F-box family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 14 GFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLV 73
          GF  MN D+L NI  RLPA SFA+AA V K WN+ CNR+L RPK SSA+SLNPS  V L 
Sbjct: 21 GFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQ 80

Query: 74 SLF 77
           +F
Sbjct: 81 EVF 83

The following BLAST results are available for this feature:

BLAST of Cla002629 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FBL91_ARATH	1.8e-10	65.31	F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=...	[more]

BLAST of Cla002629 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FY98_THECC	8.0e-13	61.90	F-box family protein, putative isoform 3 OS=Theobroma cacao GN=TCM_014665 PE=4 S...	[more]
A0A061G007_THECC	8.0e-13	61.90	F-box family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014665 PE=4 S...	[more]
A0A061G647_THECC	8.0e-13	61.90	F-box family protein, putative isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_01...	[more]
A0A061FZ19_THECC	8.0e-13	61.90	F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_014665 PE=4 S...	[more]
M5WDG3_PRUPE	3.0e-12	65.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004403mg PE=4 SV=1	[more]

BLAST of Cla002629 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|502133306\|ref\|XP_004501713.1\|	5.2e-13	66.67	PREDICTED: F-box/LRR-repeat protein At5g63520 [Cicer arietinum]	[more]
gi\|590670289\|ref\|XP_007038013.1\|	1.1e-12	61.90	F-box family protein, putative isoform 4, partial [Theobroma cacao]	[more]
gi\|590670285\|ref\|XP_007038012.1\|	1.1e-12	61.90	F-box family protein, putative isoform 3 [Theobroma cacao]	[more]
gi\|590670281\|ref\|XP_007038011.1\|	1.1e-12	61.90	F-box family protein, putative isoform 2 [Theobroma cacao]	[more]
gi\|590670277\|ref\|XP_007038010.1\|	1.1e-12	61.90	F-box family protein, putative isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002629	Cla002629.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 16..59 score: 1.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 18..58 score: 0.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 15..61 score: 2.49
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 13..50 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002629	Cla97C03G054990	Watermelon (97103) v2	wmwmbB124
Cla002629	ClCG03G003870	Watermelon (Charleston Gray)	wcgwmB223
Cla002629	CmaCh13G008140	Cucurbita maxima (Rimu)	cmawmB187
Cla002629	CmaCh18G003110	Cucurbita maxima (Rimu)	cmawmB371
Cla002629	CmoCh18G002250	Cucurbita moschata (Rifu)	cmowmB360
Cla002629	CmoCh13G008440	Cucurbita moschata (Rifu)	cmowmB175
Cla002629	Cp4.1LG09g09460	Cucurbita pepo (Zucchini)	cpewmB025
Cla002629	Cp4.1LG20g03030	Cucurbita pepo (Zucchini)	cpewmB509
Cla002629	Carg06803	Silver-seed gourd	carwmB0489
Cla002629	Carg07609	Silver-seed gourd	carwmB1003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002629	Silver-seed gourd	carwmB0354
Cla002629	Cucumber (Chinese Long) v3	cucwmB013
Cla002629	Cucumber (Chinese Long) v3	cucwmB032
Cla002629	Watermelon (97103) v2	wmwmbB137
Cla002629	Wax gourd	wgowmB474
Cla002629	Watermelon (97103) v1	wmwmB097
Cla002629	Watermelon (97103) v1	wmwmB098
Cla002629	Cucumber (Gy14) v1	cgywmB278
Cla002629	Cucumber (Gy14) v1	cgywmB704
Cla002629	Cucurbita maxima (Rimu)	cmawmB053
Cla002629	Cucurbita maxima (Rimu)	cmawmB103
Cla002629	Cucurbita moschata (Rifu)	cmowmB045
Cla002629	Cucurbita moschata (Rifu)	cmowmB093
Cla002629	Melon (DHL92) v3.5.1	mewmB149
Cla002629	Melon (DHL92) v3.5.1	mewmB269
Cla002629	Cucumber (Chinese Long) v2	cuwmB028
Cla002629	Watermelon (Charleston Gray)	wcgwmB322
Cla002629	Cucumber (Chinese Long) v2	cuwmB008
Cla002629	Cucurbita pepo (Zucchini)	cpewmB352
Cla002629	Cucurbita pepo (Zucchini)	cpewmB646
Cla002629	Bottle gourd (USVL1VR-Ls)	lsiwmB184
Cla002629	Bottle gourd (USVL1VR-Ls)	lsiwmB394
Cla002629	Cucumber (Gy14) v2	cgybwmB010
Cla002629	Cucumber (Gy14) v2	cgybwmB028
Cla002629	Melon (DHL92) v3.6.1	medwmB145
Cla002629	Melon (DHL92) v3.6.1	medwmB259