Cla002627 (gene) Watermelon (97103) v1

Overview
NameCla002627
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 3927316 .. 3927591 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGTCTCCGGCACCAGCGACGACGAGTTCAACAAGTTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

mRNA sequence

ATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGTCTCCGGCACCAGCGACGACGAGTTCAACAAGTTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

Coding sequence (CDS)

ATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGTCTCCGGCACCAGCGACGACGAGTTCAACAAGTTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

Protein sequence

MVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRSGCVSGTSDDEFNKFQKEVGGLYYHTFPVYL
Homology
[Close]
BLAST of Cla002627 vs. TrEMBL
Match: A0A0A9I0N0_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 11 WTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRS 62
          WT +  PLV KLPNS +R  PG W SSPGE RM S++P  TGAQS +++ S
Sbjct: 4  WTRMERPLVWKLPNSMIRPLPGIWNSSPGESRMNSTSPMNTGAQSAMIFLS 54

[Close]
BLAST of Cla002627 vs. TrEMBL
Match: A0A0A9KF66_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 11 WTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRS 62
          WT +  PLV KLPNS +R  PG W SSPGE RM S++P  TGAQS +++ S
Sbjct: 4  WTRMERPLVWKLPNSMIRPLPGIWNSSPGESRMNSTSPMNTGAQSAMIFLS 54

[Close]
BLAST of Cla002627 vs. TrEMBL
Match: A0A0A9I922_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1 

Query: 11 WTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRS 62
          WT +  PLV KLPNS +R  PG W SSPGE RM S++P  TG QS ++ RS
Sbjct: 4  WTRMERPLVWKLPNSMIRPLPGIWNSSPGESRMNSTSPMNTGPQSAMISRS 54

The following BLAST results are available for this feature:
BLAST of Cla002627 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9I0N0_ARUDO1.9e-0756.86Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9KF66_ARUDO1.9e-0756.86Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9I922_ARUDO4.3e-0756.86Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002627Cla002627.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002627Cla97C03G054970Watermelon (97103) v2wmwmbB124
Cla002627MELO3C002368Melon (DHL92) v3.5.1mewmB149
Cla002627ClCG03G003850Watermelon (Charleston Gray)wcgwmB223
Cla002627CmoCh13G008420Cucurbita moschata (Rifu)cmowmB175
Cla002627MELO3C002368.2Melon (DHL92) v3.6.1medwmB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla002627Watermelon (97103) v2wmwmbB137
Cla002627Wax gourdwgowmB474
Cla002627Watermelon (97103) v1wmwmB097
Cla002627Cucumber (Gy14) v1cgywmB278
Cla002627Cucumber (Gy14) v1cgywmB704
Cla002627Cucurbita maxima (Rimu)cmawmB053
Cla002627Cucurbita maxima (Rimu)cmawmB103
Cla002627Cucurbita maxima (Rimu)cmawmB187
Cla002627Cucurbita maxima (Rimu)cmawmB371
Cla002627Cucurbita moschata (Rifu)cmowmB045
Cla002627Cucurbita moschata (Rifu)cmowmB093
Cla002627Cucurbita moschata (Rifu)cmowmB360
Cla002627Melon (DHL92) v3.5.1mewmB269
Cla002627Cucumber (Chinese Long) v2cuwmB028
Cla002627Watermelon (Charleston Gray)wcgwmB322
Cla002627Cucumber (Chinese Long) v2cuwmB008
Cla002627Cucurbita pepo (Zucchini)cpewmB025
Cla002627Cucurbita pepo (Zucchini)cpewmB352
Cla002627Cucurbita pepo (Zucchini)cpewmB509
Cla002627Cucurbita pepo (Zucchini)cpewmB646
Cla002627Bottle gourd (USVL1VR-Ls)lsiwmB184
Cla002627Bottle gourd (USVL1VR-Ls)lsiwmB394
Cla002627Cucumber (Gy14) v2cgybwmB010
Cla002627Cucumber (Gy14) v2cgybwmB028
Cla002627Melon (DHL92) v3.6.1medwmB259
Cla002627Silver-seed gourdcarwmB0354
Cla002627Silver-seed gourdcarwmB0489
Cla002627Silver-seed gourdcarwmB1003
Cla002627Cucumber (Chinese Long) v3cucwmB013
Cla002627Cucumber (Chinese Long) v3cucwmB032