ClCG03G003850 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G003850
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 4166110 .. 4166391 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGTCTCCGGCACCAGCGACGACGAGTTCAACAAGTTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

mRNA sequence

ATGAGAATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGTCTCCGGCACCAGCGACGACGAGTTCAACAAGTTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

Coding sequence (CDS)

ATGAGAATGGTGAAGACGCCGAAAAATAGAATGGTATGGACGATAATAGCCTTGCCATTGGTGGTGAAGCTTCCGAATTCAACCATGCGAGAATTTCCGGGCAGCTGGAAAAGCAGCCCCGGCGAGAGGAGAATGAAGAGCAGTAATCCGAACAGAACCGGCGCCCAATCCAACATTGTTTATCGCTCCGGCTGCGTCTCCGGCACCAGCGACGACGAGTTCAACAAGTTTCAGAAGGAGGTGGGTGGTTTGTATTATCATACTTTTCCAGTCTATTTATAG

Protein sequence

MRMVKTPKNRMVWTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRSGCVSGTSDDEFNKFQKEVGGLYYHTFPVYL
Homology
[Close]
BLAST of ClCG03G003850 vs. TrEMBL
Match: A0A0A9I0N0_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 13 WTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRS 64
          WT +  PLV KLPNS +R  PG W SSPGE RM S++P  TGAQS +++ S
Sbjct: 4  WTRMERPLVWKLPNSMIRPLPGIWNSSPGESRMNSTSPMNTGAQSAMIFLS 54

[Close]
BLAST of ClCG03G003850 vs. TrEMBL
Match: A0A0A9KF66_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 13 WTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRS 64
          WT +  PLV KLPNS +R  PG W SSPGE RM S++P  TGAQS +++ S
Sbjct: 4  WTRMERPLVWKLPNSMIRPLPGIWNSSPGESRMNSTSPMNTGAQSAMIFLS 54

[Close]
BLAST of ClCG03G003850 vs. TrEMBL
Match: A0A0A9I922_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-07
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1 

Query: 13 WTIIALPLVVKLPNSTMREFPGSWKSSPGERRMKSSNPNRTGAQSNIVYRS 64
          WT +  PLV KLPNS +R  PG W SSPGE RM S++P  TG QS ++ RS
Sbjct: 4  WTRMERPLVWKLPNSMIRPLPGIWNSSPGESRMNSTSPMNTGPQSAMISRS 54

The following BLAST results are available for this feature:
BLAST of ClCG03G003850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9I0N0_ARUDO2.0e-0756.86Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9KF66_ARUDO2.0e-0756.86Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9I922_ARUDO4.4e-0756.86Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G003850.1ClCG03G003850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G003850MELO3C002368Melon (DHL92) v3.5.1mewcgB152
ClCG03G003850Cla002627Watermelon (97103) v1wcgwmB223
ClCG03G003850Cla97C03G054970Watermelon (97103) v2wcgwmbB186
ClCG03G003850CmoCh13G008420Cucurbita moschata (Rifu)cmowcgB186
ClCG03G003850MELO3C002368.2Melon (DHL92) v3.6.1medwcgB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G003850Silver-seed gourdcarwcgB0356
ClCG03G003850Silver-seed gourdcarwcgB0480
ClCG03G003850Silver-seed gourdcarwcgB0980
ClCG03G003850Cucumber (Chinese Long) v3cucwcgB038
ClCG03G003850Cucumber (Chinese Long) v3cucwcgB056
ClCG03G003850Watermelon (97103) v2wcgwmbB191
ClCG03G003850Wax gourdwcgwgoB342
ClCG03G003850Watermelon (Charleston Gray)wcgwcgB144
ClCG03G003850Cucumber (Gy14) v1cgywcgB262
ClCG03G003850Cucumber (Gy14) v1cgywcgB669
ClCG03G003850Cucurbita maxima (Rimu)cmawcgB061
ClCG03G003850Cucurbita maxima (Rimu)cmawcgB116
ClCG03G003850Cucurbita maxima (Rimu)cmawcgB196
ClCG03G003850Cucurbita maxima (Rimu)cmawcgB358
ClCG03G003850Cucurbita moschata (Rifu)cmowcgB053
ClCG03G003850Cucurbita moschata (Rifu)cmowcgB105
ClCG03G003850Cucurbita moschata (Rifu)cmowcgB350
ClCG03G003850Wild cucumber (PI 183967)cpiwcgB038
ClCG03G003850Wild cucumber (PI 183967)cpiwcgB053
ClCG03G003850Cucumber (Chinese Long) v2cuwcgB035
ClCG03G003850Cucumber (Chinese Long) v2cuwcgB052
ClCG03G003850Melon (DHL92) v3.5.1mewcgB244
ClCG03G003850Watermelon (97103) v1wcgwmB249
ClCG03G003850Cucurbita pepo (Zucchini)cpewcgB036
ClCG03G003850Cucurbita pepo (Zucchini)cpewcgB325
ClCG03G003850Cucurbita pepo (Zucchini)cpewcgB469
ClCG03G003850Cucurbita pepo (Zucchini)cpewcgB602
ClCG03G003850Bottle gourd (USVL1VR-Ls)lsiwcgB184
ClCG03G003850Bottle gourd (USVL1VR-Ls)lsiwcgB363
ClCG03G003850Cucumber (Gy14) v2cgybwcgB033
ClCG03G003850Cucumber (Gy14) v2cgybwcgB048
ClCG03G003850Melon (DHL92) v3.6.1medwcgB236