Cla002248 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002248
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Zinc finger family protein (Fragment) (AHRD V1 -* D7M766_ARALL); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type
Location	Chr7 : 1098063 .. 1098809 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAATCAAGACGAAGGATCGAGTGGGACAAGAAGTCCAGATGAACCTGAGACAATTGCGACATCGCCGTCGAGACCTCATGAAGCGAAAGGGGTGATTGGAGGGGAAAGTGGGAACCACATGGACGAGAATGAAGAGGATGGCAAGAGGCATGGAGAGGAAATGCTAGAGAGCTCAAGACAGCCAGAAAACCATCAAAACTGTATCATTGATATAAAAAGCAATGGTGAGTCAGTGGATGATGAAGATTCAAGTGGAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAACACGAGTCAATAACTTCAGATCTCATACACCTCGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGTGCCGAGATTTGGTTTATGCGTCGAGGCAACAGGTAAAATTCCTCTGATCTTCATTCTCTCCTCTTTGCCGTTTTATATCAGTTACGGTGCACTCAATAGAACTCCAATTCAATATCATCCCCTTCTAATGATAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAACGTGAGGAGAAACAGGAGTAGCGGTTTCACAATACAGCGGAATGAAAGGAGGTTGGTCACAAGCTCAACTGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCTTATTAACATGCACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTCGGATGA

mRNA sequence

ATGATCAATCAAGACGAAGGATCGAGTGGGACAAGAAGTCCAGATGAACCTGAGACAATTGCGACATCGCCGTCGAGACCTCATGAAGCGAAAGGGGTGATTGGAGGGGAAAGTGGGAACCACATGGACGAGAATGAAGAGGATGGCAAGAGGCATGGAGAGGAAATGCTAGAGAGCTCAAGACAGCCAGAAAACCATCAAAACTGTATCATTGATATAAAAAGCAATGGTGAGTCAGTGGATGATGAAGATTCAAGTGGAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAACACGAGTCAATAACTTCAGATCTCATACACCTCGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGTGCCGAGATTTGGTTTATGCGTCGAGGCAACAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAACGTGAGGAGAAACAGGAGTAGCGGTTTCACAATACAGCGGAATGAAAGGAGGTTGGTCACAAGCTCAACTGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCTTATTAACATGCACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTCGGATGA

Coding sequence (CDS)

ATGATCAATCAAGACGAAGGATCGAGTGGGACAAGAAGTCCAGATGAACCTGAGACAATTGCGACATCGCCGTCGAGACCTCATGAAGCGAAAGGGGTGATTGGAGGGGAAAGTGGGAACCACATGGACGAGAATGAAGAGGATGGCAAGAGGCATGGAGAGGAAATGCTAGAGAGCTCAAGACAGCCAGAAAACCATCAAAACTGTATCATTGATATAAAAAGCAATGGTGAGTCAGTGGATGATGAAGATTCAAGTGGAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAACACGAGTCAATAACTTCAGATCTCATACACCTCGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGTGCCGAGATTTGGTTTATGCGTCGAGGCAACAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAACGTGAGGAGAAACAGGAGTAGCGGTTTCACAATACAGCGGAATGAAAGGAGGTTGGTCACAAGCTCAACTGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCTTATTAACATGCACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTCGGATGA

Protein sequence

MINQDEGSSGTRSPDEPETIATSPSRPHEAKGVIGGESGNHMDENEEDGKRHGEEMLESSRQPENHQNCIIDIKSNGESVDDEDSSGEKVCRICHLGSEHESITSDLIHLGCSCKDELGISHRDCAEIWFMRRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVTSSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG

Homology

[Close]

BLAST of Cla002248 vs. TrEMBL
Match: A0A0A0LUV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096610 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 4.7e-105
Identity = 186/214 (86.92%), Postives = 195/214 (91.12%), Query Frame = 1


Query: 1   MINQDEGSSGTRSPDEPETIATSPSRPHEAKGVIGGESGNHMDENEEDGKRHGEEMLESS 60
           MI Q+EGSSG  SPDEP+TI  SPSRP EAKGVIGGE G  + ENEE+ KRHG EMLE+S
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  RQPENHQNCIIDIKSNGESVDDEDSSGEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120
            QPE+HQNCIIDIK+NGESVDDEDSS EKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMRRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVTSSTVSTVSLDNEV 180
           SHRDCAEIWFM RGNRQCEICGQTATNVRRNRSS F I RNERRLV SSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

[Close]

BLAST of Cla002248 vs. TrEMBL
Match: A0A067GE50_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017863mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 82/176 (46.59%), Postives = 104/176 (59.09%), Query Frame = 1


Query: 49  GKRHGEEMLESSRQPENH-QNCIIDIK--SNGESVDDEDSSGEKVCRICHLGSEH----- 108
           GK   E  +    +PE   ++C+ID+K  + G     E+  GE+VCRICHLGSE      
Sbjct: 198 GKALVENSIRKMSKPETEKESCVIDMKCSAGGGKGFRENPDGERVCRICHLGSEQLLETT 257

Query: 109 --ESITSDLIHLGCSCKDELGISHRDCAEIWFMRRGNRQCEICGQTATNVRRNRSSGFTI 168
              S T +LI LGC CKDELG++H DCAE WF  +GNR CEICGQ+A N+       F  
Sbjct: 258 ATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNITGVGDYRFME 317

Query: 169 QRNERRLVTSSTVSTVSLDNEVSLSCCW-GQRFCNFLLTCTVLAFLLPWFFRADFF 214
           + NERR + SS+ S            CW GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 318 EWNERRFIASSSAS--------ERGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 365

[Close]

BLAST of Cla002248 vs. TrEMBL
Match: F6HMA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01500 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.8e-34
Identity = 87/210 (41.43%), Postives = 118/210 (56.19%), Query Frame = 1


Query: 17  PET-IATSPSRPHEAKGVIGGESGNHMDENEEDGKRHGEEMLESSRQPENHQNCIIDIKS 76
           PET I  +P+ P +A+   G   G+  D+ + + +   E   ES    +   +C++D+K 
Sbjct: 32  PETVIMITPAEP-DAEERRGSSGGSGSDKAKAEAEAEAET--ESKASVKEVNSCVVDVKC 91

Query: 77  NGESVDD---EDSSGEKVCRICHLGSEHES---------ITSDLIHLGCSCKDELGISHR 136
            G        E+  GE+VCRICHL S+  +          ++DLI LGC CKDELGISH 
Sbjct: 92  GGGGGGGGLVENWDGERVCRICHLSSDPAAEGSIATCRDASADLIQLGCGCKDELGISHP 151

Query: 137 DCAEIWFMRRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVTSSTVSTVSLDNEVSLS 196
            CAE WF  +GNR CEICG+TA NV+    + F    NERR   SS+ S     ++    
Sbjct: 152 HCAEAWFKLKGNRMCEICGETANNVKGVWDNRFMEDWNERRYAGSSSNS-----SDRGGG 211

Query: 197 CCWGQRFCNFLLTCTVLAFLLPWFFRADFF 214
           C  GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 212 CWRGQPFCNFLMACLVIAFVLPWFFRVNMF 233

[Close]

BLAST of Cla002248 vs. TrEMBL
Match: V4U9X4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015691mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 82/176 (46.59%), Postives = 104/176 (59.09%), Query Frame = 1


Query: 49  GKRHGEEMLESSRQPENH-QNCIIDIK--SNGESVDDEDSSGEKVCRICHLGSEH----- 108
           GK   E  +    +PE   ++C+ID+K  + G     E+  GE+VCRICHLGSE      
Sbjct: 198 GKVLVENGIRKMSKPETEKESCVIDMKCSAGGGKGFRENPDGERVCRICHLGSEQLLETT 257

Query: 109 --ESITSDLIHLGCSCKDELGISHRDCAEIWFMRRGNRQCEICGQTATNVRRNRSSGFTI 168
              S T +LI LGC CKDELG++H DCAE WF  +GNR CEICGQ+A N+       F  
Sbjct: 258 ATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNITGVGDYRFME 317

Query: 169 QRNERRLVTSSTVSTVSLDNEVSLSCCW-GQRFCNFLLTCTVLAFLLPWFFRADFF 214
           + NERR + SS+ S            CW GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 318 EWNERRFIGSSSSS--------ERGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 365

[Close]

BLAST of Cla002248 vs. TrEMBL
Match: A0A0L9UHL8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g222700 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.8e-33
Identity = 78/179 (43.58%), Postives = 101/179 (56.42%), Query Frame = 1


Query: 46  EEDGKRHGEEMLESSRQPENHQNCIIDIKSNGESVDDEDSSGEKVCRICHL--------- 105
           EE G   G           +  +C+IDIK +      +DS GE +CRICHL         
Sbjct: 115 EESGLSLGSMKAAKEVSETDKSSCVIDIKCSSHKKLYDDSEGETICRICHLTSGQSPDVT 174

Query: 106 --GSEHESITSDLIHLGCSCKDELGISHRDCAEIWFMRRGNRQCEICGQTATNVRRNRSS 165
             G+ + +   DLI LGC+CKDELGI+H  CAE WF  +GNR CEICG+ A NV    S+
Sbjct: 175 IVGTANSATRVDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVSSN 234

Query: 166 GFTIQRNERRLVTSSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 214
           GF  + NERR + +   S+  +     L C  GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 235 GFIEEWNERRFMDNDGNSSPRV-----LGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 288

[Close]

BLAST of Cla002248 vs. NCBI nr
Match: gi|659072071|ref|XP_008463280.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis melo])

HSP 1 Score: 393.3 bits (1009), Expect = 2.8e-106
Identity = 190/214 (88.79%), Postives = 197/214 (92.06%), Query Frame = 1


Query: 1   MINQDEGSSGTRSPDEPETIATSPSRPHEAKGVIGGESGNHMDENEEDGKRHGEEMLESS 60
           MI Q+EGSSG  SP+EPETIA SPSRP EAKGVIGGE G ++ ENEE+ KRHGEEMLESS
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60

Query: 61  RQPENHQNCIIDIKSNGESVDDEDSSGEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120
            QPE+ QNCIIDIKSNGESVDDEDSS EKVCRICHLGSEHESITSDLIHLGCSCKDELGI
Sbjct: 61  -QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMRRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVTSSTVSTVSLDNEV 180
           SHRDCAEIWFM RGNRQCEICGQTATNVRRNRSS F I RNERRLV SST+STVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 213

[Close]

BLAST of Cla002248 vs. NCBI nr
Match: gi|778659043|ref|XP_011653704.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 6.8e-105
Identity = 186/214 (86.92%), Postives = 195/214 (91.12%), Query Frame = 1


Query: 1   MINQDEGSSGTRSPDEPETIATSPSRPHEAKGVIGGESGNHMDENEEDGKRHGEEMLESS 60
           MI Q+EGSSG  SPDEP+TI  SPSRP EAKGVIGGE G  + ENEE+ KRHG EMLE+S
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  RQPENHQNCIIDIKSNGESVDDEDSSGEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120
            QPE+HQNCIIDIK+NGESVDDEDSS EKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMRRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVTSSTVSTVSLDNEV 180
           SHRDCAEIWFM RGNRQCEICGQTATNVRRNRSS F I RNERRLV SSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

[Close]

BLAST of Cla002248 vs. NCBI nr
Match: gi|659072073|ref|XP_008463288.1| (PREDICTED: uncharacterized protein LOC103501475 isoform X2 [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 1.3e-60
Identity = 117/136 (86.03%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 1   MINQDEGSSGTRSPDEPETIATSPSRPHEAKGVIGGESGNHMDENEEDGKRHGEEMLESS 60
           MI Q+EGSSG  SP+EPETIA SPSRP EAKGVIGGE G ++ ENEE+ KRHGEEMLESS
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60

Query: 61  RQPENHQNCIIDIKSNGESVDDEDSSGEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120
            QPE+ QNCIIDIKSNGESVDDEDSS EKVCRICHLGSEHESITSDLIHLGCSCKDELGI
Sbjct: 61  -QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMRRGNR 137
           SHRDCAEIWFM RGNR
Sbjct: 121 SHRDCAEIWFMHRGNR 135

[Close]

BLAST of Cla002248 vs. NCBI nr
Match: gi|778659045|ref|XP_011653706.1| (PREDICTED: uncharacterized protein LOC105435249 isoform X2 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 7.4e-59
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 1


Query: 1   MINQDEGSSGTRSPDEPETIATSPSRPHEAKGVIGGESGNHMDENEEDGKRHGEEMLESS 60
           MI Q+EGSSG  SPDEP+TI  SPSRP EAKGVIGGE G  + ENEE+ KRHG EMLE+S
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  RQPENHQNCIIDIKSNGESVDDEDSSGEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120
            QPE+HQNCIIDIK+NGESVDDEDSS EKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMRRGNR 137
           SHRDCAEIWFM RGNR
Sbjct: 121 SHRDCAEIWFMHRGNR 136

[Close]

BLAST of Cla002248 vs. NCBI nr
Match: gi|720094721|ref|XP_010246453.1| (PREDICTED: uncharacterized protein LOC104589735 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 93/210 (44.29%), Postives = 116/210 (55.24%), Query Frame = 1


Query: 8   SSGTRSPDEPETIATSPSRPHEAKGVIGGESGNHMDENE--EDGKRHGEEMLESSRQPEN 67
           S G   P   +T+        E+   + GESG    +    E  K   EE    + + E 
Sbjct: 49  SLGQTDPAPSQTVIVIAPAEGES---VRGESGYSKTKANVLETSKVSTEERRTKAPEAEK 108

Query: 68  HQNCIIDIKSNGESVDDEDSSGEKVCRICHLGS--EHESITSDLIHLGCSCKDELGISHR 127
           H  C++DIK     +  E+  GEKVCRICHL S  +H +  SDLI LGC CK ELGI+HR
Sbjct: 109 HA-CVVDIKCGDGELSSENWEGEKVCRICHLSSGFDHPAEVSDLITLGCGCKSELGIAHR 168

Query: 128 DCAEIWFMRRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVTSSTVSTVSLDNEVSLS 187
            CAE WF  RGNR CEICG+TA NV     + F  + NERR  +SST S     +     
Sbjct: 169 HCAEAWFKLRGNRCCEICGETAKNVTGVGDNRFMDEWNERRFRSSSTNS-----SSRGRG 228

Query: 188 CCWGQRFCNFLLTCTVLAFLLPWFFRADFF 214
           C  GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 229 CWRGQPFCNFLMACLVIAFILPWFFRVNMF 249

The following BLAST results are available for this feature:

BLAST of Cla002248 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUV6_CUCSA	4.7e-105	86.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096610 PE=4 SV=1	[more]
A0A067GE50_CITSI	1.5e-34	46.59	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017863mg PE=4 SV=1	[more]
F6HMA8_VITVI	9.8e-34	41.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01500 PE=4 SV=...	[more]
V4U9X4_9ROSI	1.3e-33	46.59	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015691mg PE=4 SV=1	[more]
A0A0L9UHL8_PHAAN	2.8e-33	43.58	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g222700 PE=4 SV=1	[more]

BLAST of Cla002248 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072071\|ref\|XP_008463280.1\|	2.8e-106	88.79	PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis melo]	[more]
gi\|778659043\|ref\|XP_011653704.1\|	6.8e-105	86.92	PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus]	[more]
gi\|659072073\|ref\|XP_008463288.1\|	1.3e-60	86.03	PREDICTED: uncharacterized protein LOC103501475 isoform X2 [Cucumis melo]	[more]
gi\|778659045\|ref\|XP_011653706.1\|	7.4e-59	82.35	PREDICTED: uncharacterized protein LOC105435249 isoform X2 [Cucumis sativus]	[more]
gi\|720094721\|ref\|XP_010246453.1\|	1.4e-36	44.29	PREDICTED: uncharacterized protein LOC104589735 isoform X1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011016	Znf_RING-CH
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002248	Cla002248.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 91..141 score: 3.
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 90..142 score: 3.9
IPR011016	Zinc finger, RING-CH-type	PROFILE	PS51292	ZF_RING_CH	coord: 83..148 score: 18
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 85..144 score: 1.7
None	No IPR available	PANTHER	PTHR23012:SF76	SUBFAMILY NOT NAMED	coord: 3..213 score: 1.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 85..145 score: 6.71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002248	Cla97C07G131000	Watermelon (97103) v2	wmwmbB169
Cla002248	Cla97C01G023790	Watermelon (97103) v2	wmwmbB145
Cla002248	Csa6G519670	Cucumber (Chinese Long) v2	cuwmB491
Cla002248	ClCG07G002670	Watermelon (Charleston Gray)	wcgwmB367
Cla002248	CSPI06G35470	Wild cucumber (PI 183967)	cpiwmB506
Cla002248	Cucsa.047050	Cucumber (Gy14) v1	cgywmB024
Cla002248	CmaCh11G018990	Cucurbita maxima (Rimu)	cmawmB105
Cla002248	CmoCh11G019800	Cucurbita moschata (Rifu)	cmowmB094
Cla002248	Lsi11G017240	Bottle gourd (USVL1VR-Ls)	lsiwmB095
Cla002248	Cp4.1LG04g02990	Cucurbita pepo (Zucchini)	cpewmB651
Cla002248	MELO3C007205.2	Melon (DHL92) v3.6.1	medwmB554
Cla002248	Carg19144	Silver-seed gourd	carwmB0717
Cla002248	CsaV3_6G050990	Cucumber (Chinese Long) v3	cucwmB516

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002248	Melon (DHL92) v3.6.1	medwmB147
Cla002248	Melon (DHL92) v3.6.1	medwmB221
Cla002248	Melon (DHL92) v3.6.1	medwmB507
Cla002248	Silver-seed gourd	carwmB0529
Cla002248	Silver-seed gourd	carwmB0878
Cla002248	Cucumber (Chinese Long) v3	cucwmB038
Cla002248	Cucumber (Chinese Long) v3	cucwmB614
Cla002248	Watermelon (97103) v2	wmwmbB153
Cla002248	Watermelon (97103) v2	wmwmbB156
Cla002248	Watermelon (97103) v2	wmwmbB159
Cla002248	Wax gourd	wgowmB268
Cla002248	Wax gourd	wgowmB490
Cla002248	Wax gourd	wgowmB611
Cla002248	Watermelon (97103) v1	wmwmB079
Cla002248	Watermelon (97103) v1	wmwmB109
Cla002248	Watermelon (97103) v1	wmwmB114
Cla002248	Cucumber (Gy14) v1	cgywmB378
Cla002248	Cucumber (Gy14) v1	cgywmB410
Cla002248	Cucurbita maxima (Rimu)	cmawmB192
Cla002248	Cucurbita maxima (Rimu)	cmawmB488
Cla002248	Cucurbita maxima (Rimu)	cmawmB493
Cla002248	Cucurbita moschata (Rifu)	cmowmB180
Cla002248	Cucurbita moschata (Rifu)	cmowmB364
Cla002248	Cucurbita moschata (Rifu)	cmowmB482
Cla002248	Cucurbita moschata (Rifu)	cmowmB487
Cla002248	Melon (DHL92) v3.5.1	mewmB152
Cla002248	Melon (DHL92) v3.5.1	mewmB226
Cla002248	Melon (DHL92) v3.5.1	mewmB522
Cla002248	Watermelon (Charleston Gray)	wcgwmB129
Cla002248	Watermelon (Charleston Gray)	wcgwmB188
Cla002248	Watermelon (Charleston Gray)	wcgwmB235
Cla002248	Cucumber (Chinese Long) v2	cuwmB031
Cla002248	Cucumber (Chinese Long) v2	cuwmB318
Cla002248	Cucumber (Chinese Long) v2	cuwmB584
Cla002248	Cucurbita pepo (Zucchini)	cpewmB254
Cla002248	Cucurbita pepo (Zucchini)	cpewmB510
Cla002248	Bottle gourd (USVL1VR-Ls)	lsiwmB138
Cla002248	Bottle gourd (USVL1VR-Ls)	lsiwmB193
Cla002248	Bottle gourd (USVL1VR-Ls)	lsiwmB310
Cla002248	Cucumber (Gy14) v2	cgybwmB032
Cla002248	Cucumber (Gy14) v2	cgybwmB546