Cla002046 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002046
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 549670 .. 550921 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCAGAGCATGGTGACGAAACCCTAGAAGCCCTAGCCGTCGTCAACAAAAAGGATTCTAGGCAAGATCTGCCACCACCACCTTACCTGCCACCGTCGCCGATGGAGTCCGCCGCCGCCACCAGGTCAACCGTCCAAGAAGCCGTCAACCGGTACCTCCGGTCACTTAACCCAAGCACCGCCGCTACATTATTTCAGTTTCTACTACTGCCGACACAAAACCCTAGCGCCACTCCTGCTGCAATTTCTCATACTCAACTGCCGCTGATGGATCCTTCTGCTGCTGCTGCTCAAGTTGACCAGCCAGTCTCCACCGCTGCCGCTAATCCGTCAACCCTAGTGCTGAGAGTAAGTTTCGCATCTGTCGTCCATCGTAGCACCATCACGAGATCTTCTTCCCAAACACCTGTGTTGGGTTGTCGTGGGCTACCAAGAGCTGCAGCTGTCCAACCAAGCGTCGAGGGGTTCCACCATCTTCAAGAACCGACGTTCCACGACGCTGCCAGCGCCAACTTCAATCCTCACGTTGTGGGTACTCAATTTTTTCCTCCGATAGTTGCTGCCAACGCCGGAGTTCCTCACCAAGGAGTCGACAACCAATATGAACAGTATGGATCTGCTGGTCTCTCCTCGATTATGATTAAACAGCAACTTACCAATCTTCAAGCAAGTTTCCAACAACAAATCACTGTTCTTGGGGTAGCCCTTGGTGCTTCGACCAACCTTGATCAAAGTGCAGTAAATTCAAGCATCTAGTCAAGTCTACCGATGTATCCAGAGGAATTCGATAACTGCTTTCCCTACCTTAATTACTACACCTTATATACCTAGACCAATGGGTAACTCCACAAGGCTAATTGTTGGTGAAAAGTTAAATGGTCAGAATTATTACTCCTGGTCTCAGACCGTTAAAATGGTGCTTGAGGGACGCCACAAATTTGGGTATCTAACTGGTGAGATACTGAAATCCAGACAAGGAGATCCTCAAGAGCGCATTTCGAAAGGAGAGGACTCCTTACTTCGTTCTCGGTTGATTCACAGTATGGAACCTCAAATTGGAAAACCTCTACTGTATGCTGCAACTACTCGGGATATCAAAAATTATACTCCAAGAGACAGAACGCATCACGACTTTACACCCCGCGGAAACAAATCCACGAATGCAAAGAAGGGACTATGGATGTCACATCATACCTTAACAAATTGTCTCCTATTTGGCAGGAGATGGATTTGTGTCGAGAACTATTGA

mRNA sequence

ATGGTATCAGAGCATGGTGACGAAACCCTAGAAGCCCTAGCCGTCGTCAACAAAAAGGATTCTAGGCAAGATCTGCCACCACCACCTTACCTGCCACCGTCGCCGATGGAGTCCGCCGCCGCCACCAGGTCAACCGTCCAAGAAGCCGTCAACCGGTACCTCCGGTCACTTAACCCAAGCACCGCCGCTACATTATTTCAGTTTCTACTACTGCCGACACAAAACCCTAGCGCCACTCCTGCTGCAATTTCTCATACTCAACTGCCGCTGATGGATCCTTCTGCTGCTGCTGCTCAAGTTGACCAGCCAGTCTCCACCGCTGCCGCTAATCCGTCAACCCTAGTGCTGAGAGTAAGTTTCGCATCTGTCGTCCATCGTAGCACCATCACGAGATCTTCTTCCCAAACACCTGTGTTGGGTTGTCGTGGGCTACCAAGAGCTGCAGCTGTCCAACCAAGCGTCGAGGGGTTCCACCATCTTCAAGAACCGACGTTCCACGACGCTGCCAGCGCCAACTTCAATCCTCACGTTGTGGGTACTCAATTTTTTCCTCCGATAGTTGCTGCCAACGCCGGAGTTCCTCACCAAGGAGTCGACAACCAATATGAACAGTATGGATCTGCTGGTCTCTCCTCGATTATGATTAAACAGCAACTTACCAATCTTCAAGCAAGTTTCCAACAACAAATCACTGTTCTTGGGGTAGCCCTTGGTGCTTCGACCAACCTTGATCAAAGTGCAACCGTTAAAATGGTGCTTGAGGGACGCCACAAATTTGGGTATCTAACTGGTGAGATACTGAAATCCAGACAAGGAGATCCTCAAGAGCGCATTTCGAAAGGAGAGGACTCCTTACTTCGTTCTCGGTTGATTCACAGTATGGAACCTCAAATTGGAAAACCTCTACTGTATGCTGCAACTACTCGGGATATCAAAAATTATACTCCAAGAGACAGAACGCATCACGACTTTACACCCCGCGGAAACAAATCCACGAATGCAAAGAAGGGACTATGGATGTCACATCATACCTTAACAAATTGTCTCCTATTTGGCAGGAGATGGATTTGTGTCGAGAACTATTGA

Coding sequence (CDS)

ATGGTATCAGAGCATGGTGACGAAACCCTAGAAGCCCTAGCCGTCGTCAACAAAAAGGATTCTAGGCAAGATCTGCCACCACCACCTTACCTGCCACCGTCGCCGATGGAGTCCGCCGCCGCCACCAGGTCAACCGTCCAAGAAGCCGTCAACCGGTACCTCCGGTCACTTAACCCAAGCACCGCCGCTACATTATTTCAGTTTCTACTACTGCCGACACAAAACCCTAGCGCCACTCCTGCTGCAATTTCTCATACTCAACTGCCGCTGATGGATCCTTCTGCTGCTGCTGCTCAAGTTGACCAGCCAGTCTCCACCGCTGCCGCTAATCCGTCAACCCTAGTGCTGAGAGTAAGTTTCGCATCTGTCGTCCATCGTAGCACCATCACGAGATCTTCTTCCCAAACACCTGTGTTGGGTTGTCGTGGGCTACCAAGAGCTGCAGCTGTCCAACCAAGCGTCGAGGGGTTCCACCATCTTCAAGAACCGACGTTCCACGACGCTGCCAGCGCCAACTTCAATCCTCACGTTGTGGGTACTCAATTTTTTCCTCCGATAGTTGCTGCCAACGCCGGAGTTCCTCACCAAGGAGTCGACAACCAATATGAACAGTATGGATCTGCTGGTCTCTCCTCGATTATGATTAAACAGCAACTTACCAATCTTCAAGCAAGTTTCCAACAACAAATCACTGTTCTTGGGGTAGCCCTTGGTGCTTCGACCAACCTTGATCAAAGTGCAACCGTTAAAATGGTGCTTGAGGGACGCCACAAATTTGGGTATCTAACTGGTGAGATACTGAAATCCAGACAAGGAGATCCTCAAGAGCGCATTTCGAAAGGAGAGGACTCCTTACTTCGTTCTCGGTTGATTCACAGTATGGAACCTCAAATTGGAAAACCTCTACTGTATGCTGCAACTACTCGGGATATCAAAAATTATACTCCAAGAGACAGAACGCATCACGACTTTACACCCCGCGGAAACAAATCCACGAATGCAAAGAAGGGACTATGGATGTCACATCATACCTTAACAAATTGTCTCCTATTTGGCAGGAGATGGATTTGTGTCGAGAACTATTGA

Protein sequence

MVSEHGDETLEALAVVNKKDSRQDLPPPPYLPPSPMESAAATRSTVQEAVNRYLRSLNPSTAATLFQFLLLPTQNPSATPAAISHTQLPLMDPSAAAAQVDQPVSTAAANPSTLVLRVSFASVVHRSTITRSSSQTPVLGCRGLPRAAAVQPSVEGFHHLQEPTFHDAASANFNPHVVGTQFFPPIVAANAGVPHQGVDNQYEQYGSAGLSSIMIKQQLTNLQASFQQQITVLGVALGASTNLDQSATVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEPQIGKPLLYAATTRDIKNYTPRDRTHHDFTPRGNKSTNAKKGLWMSHHTLTNCLLFGRRWICVENY

Homology

[Close]

BLAST of Cla002046 vs. TrEMBL
Match: W9RFP2_9ROSA (ATP-dependent helicase 1 OS=Morus notabilis GN=L484_022922 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.1e-08
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 233 LGVALGASTNLDQSATVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIH 292
           L   L     L+ + +VK+V++GR K G+LTGEI K   GDP  +  + E+SL+ + LI+
Sbjct: 486 LSTKLNGQNYLEWAQSVKLVIDGRGKIGHLTGEISKPVVGDPHLKKWQSENSLVIAWLIN 545

Query: 293 SMEPQIGKPLLYAATTRDI 312
           SMEP IGKP L+  T R++
Sbjct: 546 SMEPTIGKPHLFLRTAREV 564

[Close]

BLAST of Cla002046 vs. TrEMBL
Match: A5ASK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005355 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 237 LGASTNLDQSATVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEP 296
           L     L+ + TVK+V++G+ K G+LTGE+ K    DP+ +  + E+S++   LI+SME 
Sbjct: 47  LNGKNYLEWAQTVKLVIDGKGKLGHLTGEVKKPANNDPRLKSWRSENSMVIPWLINSMES 106

Query: 297 QIGKPLLYAATTRDI 312
            IGKP L+  TT+++
Sbjct: 107 SIGKPFLFIPTTKEV 121

[Close]

BLAST of Cla002046 vs. TrEMBL
Match: A0A0V0HUD0_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 237 LGASTNLDQSATVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEP 296
           L     L+ + +VK+ ++GR K G+LTGE  K   GDP+    + E+SL+ + LI+SMEP
Sbjct: 49  LNGKNYLEWAQSVKLAIDGRGKLGHLTGETKKPGVGDPKMNSWRSENSLVIAWLINSMEP 108

Query: 297 QIGKPLLYAATTRDI 312
            IGK  L+  T +D+
Sbjct: 109 VIGKSYLFLPTAKDV 123

[Close]

BLAST of Cla002046 vs. NCBI nr
Match: gi|659127950|ref|XP_008463973.1| (PREDICTED: uncharacterized protein LOC103501966 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 4.2e-14
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1


Query: 246 SATVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEPQIGKPLLYA 305
           S ++KM+LEG HKF +LTGEI +   GDPQE   KGEDSL+ S LI+SMEPQIGK LLY 
Sbjct: 22  SESIKMILEGHHKFDFLTGEIPRLPPGDPQEWYWKGEDSLILSLLINSMEPQIGKLLLYV 81

Query: 306 ATTRDI-----KNYTPRDRTHHDFTPRGNKSTNAKKGLWMS 342
            T +D+     K Y  R      +T +  + ++  KG W+S
Sbjct: 82  VTVKDVWDMAQKLYCKRQNAFRFYTMQIQEESH--KGSWVS 120

[Close]

BLAST of Cla002046 vs. NCBI nr
Match: gi|703087771|ref|XP_010093360.1| (ATP-dependent helicase 1 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-08
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 233 LGVALGASTNLDQSATVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIH 292
           L   L     L+ + +VK+V++GR K G+LTGEI K   GDP  +  + E+SL+ + LI+
Sbjct: 486 LSTKLNGQNYLEWAQSVKLVIDGRGKIGHLTGEISKPVVGDPHLKKWQSENSLVIAWLIN 545

Query: 293 SMEPQIGKPLLYAATTRDI 312
           SMEP IGKP L+  T R++
Sbjct: 546 SMEPTIGKPHLFLRTAREV 564

[Close]

BLAST of Cla002046 vs. NCBI nr
Match: gi|985470707|ref|XP_015381055.1| (PREDICTED: uncharacterized protein LOC107174567 [Citrus sinensis])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 237 LGASTNLDQSATVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEP 296
           L  S  L+ + ++K+ ++GR K G+LTGE+ +   GDP  +  + E+SL+ + LI+SMEP
Sbjct: 57  LNGSNYLEWAQSIKLAIDGRGKLGHLTGEVKQPTAGDPNLKRWRSENSLVIAWLINSMEP 116

Query: 297 QIGKPLLYAATTRDI 312
            IGKP L+  T +D+
Sbjct: 117 AIGKPHLFFPTAKDV 131

[Close]

BLAST of Cla002046 vs. NCBI nr
Match: gi|147794410|emb|CAN75995.1| (hypothetical protein VITISV_005355 [Vitis vinifera])

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-07
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 237 LGASTNLDQSATVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEP 296
           L     L+ + TVK+V++G+ K G+LTGE+ K    DP+ +  + E+S++   LI+SME 
Sbjct: 47  LNGKNYLEWAQTVKLVIDGKGKLGHLTGEVKKPANNDPRLKSWRSENSMVIPWLINSMES 106

Query: 297 QIGKPLLYAATTRDI 312
            IGKP L+  TT+++
Sbjct: 107 SIGKPFLFIPTTKEV 121

[Close]

BLAST of Cla002046 vs. NCBI nr
Match: gi|568853697|ref|XP_006480482.1| (PREDICTED: uncharacterized protein LOC102616302 [Citrus sinensis])

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-06
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 1


Query: 221 NLQASFQQQITVLGVALGASTNLDQSATVKMVLEGRHKFGYLTGEILKSRQGDPQERISK 280
           N   SF  Q+T  G  L     L+ + ++K+V++G+ + GY+TGE  +  + DP  +  K
Sbjct: 38  NGSESFPMQLT--GHKLNGKNYLEWAQSIKLVVDGKGRLGYITGETKEPEKTDPTWKTWK 97

Query: 281 GEDSLLRSRLIHSMEPQIGKPLLYAATTRDI 312
            E+SL+ S LI+SME  IG+  L+  T +D+
Sbjct: 98  SENSLVMSWLINSMEVSIGRTYLFLPTAKDV 126

The following BLAST results are available for this feature:

BLAST of Cla002046 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RFP2_9ROSA	4.1e-08	44.30	ATP-dependent helicase 1 OS=Morus notabilis GN=L484_022922 PE=4 SV=1	[more]
A5ASK2_VITVI	3.5e-07	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005355 PE=4 SV=1	[more]
A0A0V0HUD0_SOLCH	2.2e-06	41.33	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Cla002046 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127950\|ref\|XP_008463973.1\|	4.2e-14	48.51	PREDICTED: uncharacterized protein LOC103501966 [Cucumis melo]	[more]
gi\|703087771\|ref\|XP_010093360.1\|	5.9e-08	44.30	ATP-dependent helicase 1 [Morus notabilis]	[more]
gi\|985470707\|ref\|XP_015381055.1\|	2.2e-07	41.33	PREDICTED: uncharacterized protein LOC107174567 [Citrus sinensis]	[more]
gi\|147794410\|emb\|CAN75995.1\|	5.0e-07	40.00	hypothetical protein VITISV_005355 [Vitis vinifera]	[more]
gi\|568853697\|ref\|XP_006480482.1\|	2.5e-06	36.26	PREDICTED: uncharacterized protein LOC102616302 [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002046	Cla002046.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002046	ClCG11G007420	Watermelon (Charleston Gray)	wcgwmB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002046	Bottle gourd (USVL1VR-Ls)	lsiwmB115
Cla002046	Watermelon (97103) v2	wmwmbB360
Cla002046	Melon (DHL92) v3.5.1	mewmB429