ClCG11G007420 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G007420
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr11 : 9600234 .. 9601485 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCAGAGCATGGTGACGAAACCCTAGAAGCCCTAGCCGTCGTCAACAAAAAGGATTCTAGGCAAGATCTGCCACCACCACCTTACCTGCCACCGTCGCCGATGGAGTCCGCCGCCGCCACCAGGTCAACCGTCCAAGAAGCCGTCAACCGGTACCTCCGGTCACTTAACCCAAGCACCGCCGCTACATTATTTCAGTTTCTACTACTGCCGACACAAAACCCTAGCGCCACTCCTGCTGCAATTTCTCATACTCAACTGCCGCTGATGGATCCTTCTGCTGCTGCTGCTCAAGTTGACCAGCCAGTCTCCACCGCTGCCGCTAATCCGTCAACCCTAGTGCTGAGAGTAAGTTTCGCATCTGTCGTCCATCGTAGCACCATCACGAGATCTTCTTCCCAAACACCTGTGTTGGGTTGTCGTGGGCTACCAAGAGCTGCAGCTGTCCAACCAAGCGTCGAGGGGTTCCACCATCTTCAAGAACCGACGTTCCACGACGCTGCCAGCGCCAACTTCAATCCTCACGTTGTGGGTACTCAATTTTTTCCTCCGATAGTTGCTGCCAACGCCGGAGTTCCTCACCAAGGAGTCGACAACCAATATGAACAGTATGGATCTGCTGGTCTCTCCTCGATTATGATTAAACAGCAACTTACCAATCTTCAAGCAAGTTTCCAACAACAAATCACTGTTCTTGGGGTAGCCCTTGGTGCTTCGACCAACCTTGATCAAAGTGCAGTAAATTCAAGCATCTAGTCAAGTCTACCGATGTATCCAGAGGAATTCGATAACTGCTTTCCCTACCTTAATTACTACACCTTATATACCTAGACCAATGGGTAACTCCACAAGGCTAATTGTTGGTGAAAAGTTAAATGGTCAGAATTATTACTCCTGGTCTCAGACCGTTAAAATGGTGCTTGAGGGACGCCACAAATTTGGGTATCTAACTGGTGAGATACTGAAATCCAGACAAGGAGATCCTCAAGAGCGCATTTCGAAAGGAGAGGACTCCTTACTTCGTTCTCGGTTGATTCACAGTATGGAACCTCAAATTGGAAAACCTCTACTGTATGCTGCAACTACTCGGGATATCAAAAATTATACTCCAAGAGACAGAACGCATCACGACTTTACACCCCGCGGAAACAAATCCACGAATGCAAAGAAGGGACTATGGATGTCACATCATACCTTAACAAATTGTCTCCTATTTGGCAGGAGATGGATTTGTGTCGAGAACTATTGA

mRNA sequence

ATGGTATCAGAGCATGGTGACGAAACCCTAGAAGCCCTAGCCGTCGTCAACAAAAAGGATTCTAGGCAAGATCTGCCACCACCACCTTACCTGCCACCGTCGCCGATGGAGTCCGCCGCCGCCACCAGGTCAACCGTCCAAGAAGCCGTCAACCGGTACCTCCGGTCACTTAACCCAAGCACCGCCGCTACATTATTTCAGTTTCTACTACTGCCGACACAAAACCCTAGCGCCACTCCTGCTGCAATTTCTCATACTCAACTGCCGCTGATGGATCCTTCTGCTGCTGCTGCTCAAGTTGACCAGCCAGTCTCCACCGCTGCCGCTAATCCGTCAACCCTAGTGCTGAGAGTAAGTTTCGCATCTGTCGTCCATCGTAGCACCATCACGAGATCTTCTTCCCAAACACCTGTGTTGGGTTGTCGTGGGCTACCAAGAGCTGCAGCTGTCCAACCAAGCGTCGAGGGGTTCCACCATCTTCAAGAACCGACGTTCCACGACGCTGCCAGCGCCAACTTCAATCCTCACGTTGTGGGTACTCAATTTTTTCCTCCGATAGTTGCTGCCAACGCCGGAGTTCCTCACCAAGGAGTCGACAACCAATATGAACAGTATGGATCTGCTGGTCTCTCCTCGATTATGATTAAACAGCAACTTACCAATCTTCAAGCAAGTTTCCAACAACAAATCACTGTTCTTGGGGTAGCCCTTGGTGCTTCGACCAACCTTGATCAAAGTGCAAGGAATTCGATAACTGCTTTCCCTACCTTAATTACTACACCTTATATACCTAGACCAATGGGTAACTCCACAAGGCTAATTGTTGGTGAAAAGTTAAATGGTCAGAATTATTACTCCTGGTCTCAGACCGTTAAAATGGTGCTTGAGGGACGCCACAAATTTGGGTATCTAACTGGTGAGATACTGAAATCCAGACAAGGAGATCCTCAAGAGCGCATTTCGAAAGGAGAGGACTCCTTACTTCGTTCTCGGTTGATTCACAGTATGGAACCTCAAATTGGAAAACCTCTACTGTATGCTGCAACTACTCGGGATATCAAAAATTATACTCCAAGAGACAGAACGCATCACGACTTTACACCCCGCGGAAACAAATCCACGAATGCAAAGAAGGGACTATGGATGTCACATCATACCTTAACAAATTGTCTCCTATTTGGCAGGAGATGGATTTGTGTCGAGAACTATTGA

Coding sequence (CDS)

ATGGTATCAGAGCATGGTGACGAAACCCTAGAAGCCCTAGCCGTCGTCAACAAAAAGGATTCTAGGCAAGATCTGCCACCACCACCTTACCTGCCACCGTCGCCGATGGAGTCCGCCGCCGCCACCAGGTCAACCGTCCAAGAAGCCGTCAACCGGTACCTCCGGTCACTTAACCCAAGCACCGCCGCTACATTATTTCAGTTTCTACTACTGCCGACACAAAACCCTAGCGCCACTCCTGCTGCAATTTCTCATACTCAACTGCCGCTGATGGATCCTTCTGCTGCTGCTGCTCAAGTTGACCAGCCAGTCTCCACCGCTGCCGCTAATCCGTCAACCCTAGTGCTGAGAGTAAGTTTCGCATCTGTCGTCCATCGTAGCACCATCACGAGATCTTCTTCCCAAACACCTGTGTTGGGTTGTCGTGGGCTACCAAGAGCTGCAGCTGTCCAACCAAGCGTCGAGGGGTTCCACCATCTTCAAGAACCGACGTTCCACGACGCTGCCAGCGCCAACTTCAATCCTCACGTTGTGGGTACTCAATTTTTTCCTCCGATAGTTGCTGCCAACGCCGGAGTTCCTCACCAAGGAGTCGACAACCAATATGAACAGTATGGATCTGCTGGTCTCTCCTCGATTATGATTAAACAGCAACTTACCAATCTTCAAGCAAGTTTCCAACAACAAATCACTGTTCTTGGGGTAGCCCTTGGTGCTTCGACCAACCTTGATCAAAGTGCAAGGAATTCGATAACTGCTTTCCCTACCTTAATTACTACACCTTATATACCTAGACCAATGGGTAACTCCACAAGGCTAATTGTTGGTGAAAAGTTAAATGGTCAGAATTATTACTCCTGGTCTCAGACCGTTAAAATGGTGCTTGAGGGACGCCACAAATTTGGGTATCTAACTGGTGAGATACTGAAATCCAGACAAGGAGATCCTCAAGAGCGCATTTCGAAAGGAGAGGACTCCTTACTTCGTTCTCGGTTGATTCACAGTATGGAACCTCAAATTGGAAAACCTCTACTGTATGCTGCAACTACTCGGGATATCAAAAATTATACTCCAAGAGACAGAACGCATCACGACTTTACACCCCGCGGAAACAAATCCACGAATGCAAAGAAGGGACTATGGATGTCACATCATACCTTAACAAATTGTCTCCTATTTGGCAGGAGATGGATTTGTGTCGAGAACTATTGA

Protein sequence

MVSEHGDETLEALAVVNKKDSRQDLPPPPYLPPSPMESAAATRSTVQEAVNRYLRSLNPSTAATLFQFLLLPTQNPSATPAAISHTQLPLMDPSAAAAQVDQPVSTAAANPSTLVLRVSFASVVHRSTITRSSSQTPVLGCRGLPRAAAVQPSVEGFHHLQEPTFHDAASANFNPHVVGTQFFPPIVAANAGVPHQGVDNQYEQYGSAGLSSIMIKQQLTNLQASFQQQITVLGVALGASTNLDQSARNSITAFPTLITTPYIPRPMGNSTRLIVGEKLNGQNYYSWSQTVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEPQIGKPLLYAATTRDIKNYTPRDRTHHDFTPRGNKSTNAKKGLWMSHHTLTNCLLFGRRWICVENY
Homology
[Close]
BLAST of ClCG11G007420 vs. TrEMBL
Match: A5ASK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005355 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 49/122 (40.16%), Postives = 76/122 (62.30%), Query Frame = 1 

Query: 234 GVALGASTNLD--QSARNSITAFPTLITTPYIPRPMGNSTRLIVGEKLNGQNYYSWSQTV 293
           G   G++T  D  +S +N+ TA      T Y+     NS +L +  KLNG+NY  W+QTV
Sbjct: 3   GAGRGSATTGDAVESIQNNSTALSN--ETEYLFVVSSNSLQLTMN-KLNGKNYLEWAQTV 62

Query: 294 KMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEPQIGKPLLYAATTR 353
           K+V++G+ K G+LTGE+ K    DP+ +  + E+S++   LI+SME  IGKP L+  TT+
Sbjct: 63  KLVIDGKGKLGHLTGEVKKPANNDPRLKSWRSENSMVIPWLINSMESSIGKPFLFIPTTK 121

[Close]
BLAST of ClCG11G007420 vs. TrEMBL
Match: W9RFP2_9ROSA (ATP-dependent helicase 1 OS=Morus notabilis GN=L484_022922 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1 

Query: 278 KLNGQNYYSWSQTVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSME 337
           KLNGQNY  W+Q+VK+V++GR K G+LTGEI K   GDP  +  + E+SL+ + LI+SME
Sbjct: 489 KLNGQNYLEWAQSVKLVIDGRGKIGHLTGEISKPVVGDPHLKKWQSENSLVIAWLINSME 548

Query: 338 PQIGKPLLYAATTRDI 354
           P IGKP L+  T R++
Sbjct: 549 PTIGKPHLFLRTAREV 564

[Close]
BLAST of ClCG11G007420 vs. TrEMBL
Match: A0A0V0HUD0_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 268 GNSTRL---IVGEKLNGQNYYSWSQTVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGE 327
           GN++ +   +   +LNG+NY  W+Q+VK+ ++GR K G+LTGE  K   GDP+    + E
Sbjct: 35  GNASHMPFQLTSHRLNGKNYLEWAQSVKLAIDGRGKLGHLTGETKKPGVGDPKMNSWRSE 94

Query: 328 DSLLRSRLIHSMEPQIGKPLLYAATTRDI 354
           +SL+ + LI+SMEP IGK  L+  T +D+
Sbjct: 95  NSLVIAWLINSMEPVIGKSYLFLPTAKDV 123

[Close]
BLAST of ClCG11G007420 vs. TrEMBL
Match: A5AEQ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013438 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1 

Query: 240 STNLDQS-ARNSITAFPTLITTPYIPRPMGNSTRLIVGEKLNGQNYYSWSQTVKMVLEGR 299
           +T  DQS A  S+  FP            G+++  I   +LNG+NY  WSQ+V +V+ GR
Sbjct: 12  ATTSDQSHANQSVMTFPN-----------GDNSLQITAHRLNGKNYLQWSQSVNIVICGR 71

Query: 300 HKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEPQIGKPLLYAATTRDIKNYTP 359
            KF YLTGE       DP  +I   E+S++ + LI+SMEP+I +  L+  T +D+ + T 
Sbjct: 72  GKFEYLTGEANAPAATDPTYKIWFAENSIMHAWLINSMEPKISRRYLFLKTAKDVWDTTK 121

[Close]
BLAST of ClCG11G007420 vs. TrEMBL
Match: W9ST56_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013287 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1 

Query: 211 SSIMIKQQLTNLQASFQQQITVLGVALGASTN---LDQSARNSITAFPTLITTPYIPRPM 270
           SSI+I     N Q   Q   +V+    G   +    D+ +  ++ A   +  +  +   +
Sbjct: 359 SSILITGHKLNGQNYLQWSQSVMMFICGKGKDEYLTDERSTTTLEASSNVEGSSAVNSHV 418

Query: 271 G--NSTRLIVGEKLNGQNYYSWSQTVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGED 330
           G  NS+ LI G KLNGQ+Y  WSQ+V M + G+ K  YLT EI    +GDP+ RI K E+
Sbjct: 419 GSENSSILITGHKLNGQHYLQWSQSVMMFICGKGKDEYLTDEITIPEKGDPKYRIWKIEN 478

Query: 331 SLLRSRLIHSMEPQIGKPLLYAATTRDI 354
            ++ S LI+SM  +IG+  L   TT +I
Sbjct: 479 HMIMSWLINSMNIEIGENFLLYGTTTEI 506

[Close]
BLAST of ClCG11G007420 vs. NCBI nr
Match: gi|659127950|ref|XP_008463973.1| (PREDICTED: uncharacterized protein LOC103501966 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 3.0e-21
Identity = 60/122 (49.18%), Postives = 77/122 (63.11%), Query Frame = 1 

Query: 267 MGNSTRLIVGEKLNGQNYYSWSQTVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDS 326
           M  S     GEKLNGQ Y+ WS+++KM+LEG HKF +LTGEI +   GDPQE   KGEDS
Sbjct: 1   MARSIGYFSGEKLNGQKYFLWSESIKMILEGHHKFDFLTGEIPRLPPGDPQEWYWKGEDS 60

Query: 327 LLRSRLIHSMEPQIGKPLLYAATTRDI-----KNYTPRDRTHHDFTPRGNKSTNAKKGLW 384
           L+ S LI+SMEPQIGK LLY  T +D+     K Y  R      +T +  + ++  KG W
Sbjct: 61  LILSLLINSMEPQIGKLLLYVVTVKDVWDMAQKLYCKRQNAFRFYTMQIQEESH--KGSW 120

[Close]
BLAST of ClCG11G007420 vs. NCBI nr
Match: gi|147794410|emb|CAN75995.1| (hypothetical protein VITISV_005355 [Vitis vinifera])

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-14
Identity = 49/122 (40.16%), Postives = 76/122 (62.30%), Query Frame = 1 

Query: 234 GVALGASTNLD--QSARNSITAFPTLITTPYIPRPMGNSTRLIVGEKLNGQNYYSWSQTV 293
           G   G++T  D  +S +N+ TA      T Y+     NS +L +  KLNG+NY  W+QTV
Sbjct: 3   GAGRGSATTGDAVESIQNNSTALSN--ETEYLFVVSSNSLQLTMN-KLNGKNYLEWAQTV 62

Query: 294 KMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEPQIGKPLLYAATTR 353
           K+V++G+ K G+LTGE+ K    DP+ +  + E+S++   LI+SME  IGKP L+  TT+
Sbjct: 63  KLVIDGKGKLGHLTGEVKKPANNDPRLKSWRSENSMVIPWLINSMESSIGKPFLFIPTTK 121

[Close]
BLAST of ClCG11G007420 vs. NCBI nr
Match: gi|703087771|ref|XP_010093360.1| (ATP-dependent helicase 1 [Morus notabilis])

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-13
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1 

Query: 278 KLNGQNYYSWSQTVKMVLEGRHKFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSME 337
           KLNGQNY  W+Q+VK+V++GR K G+LTGEI K   GDP  +  + E+SL+ + LI+SME
Sbjct: 489 KLNGQNYLEWAQSVKLVIDGRGKIGHLTGEISKPVVGDPHLKKWQSENSLVIAWLINSME 548

Query: 338 PQIGKPLLYAATTRDI 354
           P IGKP L+  T R++
Sbjct: 549 PTIGKPHLFLRTAREV 564

[Close]
BLAST of ClCG11G007420 vs. NCBI nr
Match: gi|985452899|ref|XP_006481138.2| (PREDICTED: uncharacterized protein LOC102612481 [Citrus sinensis])

HSP 1 Score: 83.6 bits (205), Expect = 8.8e-13
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 1 

Query: 241 TNLDQSARNSITAFPTLITTPYIPRPMGNSTRLIVGEKLNGQNYYSWSQTVKMVLEGRHK 300
           +N   S  NS       I+ P    P+  +T  I   KLNG+NY  WSQ+V++V++G+ K
Sbjct: 10  SNSASSDANSTATSSEGISQPSPIVPVSENTLQITIHKLNGKNYLEWSQSVRLVIDGKGK 69

Query: 301 FGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEPQIGKPLLYAATTRDI 354
            GYL GEI      DP+    + E+S++   LI+SMEP +GKP ++  T RD+
Sbjct: 70  LGYLNGEIQPPAADDPKFLQWRSENSMVTVWLINSMEPTLGKPFMFLPTARDV 122

[Close]
BLAST of ClCG11G007420 vs. NCBI nr
Match: gi|985470707|ref|XP_015381055.1| (PREDICTED: uncharacterized protein LOC107174567 [Citrus sinensis])

HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12
Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 1 

Query: 240 STNLDQSARNSITAFPTLITTPYIPRPMGNSTRLIVGEKLNGQNYYSWSQTVKMVLEGRH 299
           S+ + QS   S  A  T  T  +   P   S +L +  KLNG NY  W+Q++K+ ++GR 
Sbjct: 24  SSEVTQSESQS--AISTASTDSFALNP---SLQLTI-HKLNGSNYLEWAQSIKLAIDGRG 83

Query: 300 KFGYLTGEILKSRQGDPQERISKGEDSLLRSRLIHSMEPQIGKPLLYAATTRDI 354
           K G+LTGE+ +   GDP  +  + E+SL+ + LI+SMEP IGKP L+  T +D+
Sbjct: 84  KLGHLTGEVKQPTAGDPNLKRWRSENSLVIAWLINSMEPAIGKPHLFFPTAKDV 131

The following BLAST results are available for this feature:
BLAST of ClCG11G007420 vs. TrEMBL
Match NameE-valueIdentityDescription
A5ASK2_VITVI3.3e-1440.16Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005355 PE=4 SV=1[more]
W9RFP2_9ROSA2.1e-1353.95ATP-dependent helicase 1 OS=Morus notabilis GN=L484_022922 PE=4 SV=1[more]
A0A0V0HUD0_SOLCH1.2e-1142.70Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1[more]
A5AEQ7_VITVI1.5e-1138.02Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013438 PE=4 SV=1[more]
W9ST56_9ROSA1.3e-1035.81Uncharacterized protein OS=Morus notabilis GN=L484_013287 PE=4 SV=1[more]
BLAST of ClCG11G007420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659127950|ref|XP_008463973.1|3.0e-2149.18PREDICTED: uncharacterized protein LOC103501966 [Cucumis melo][more]
gi|147794410|emb|CAN75995.1|4.7e-1440.16hypothetical protein VITISV_005355 [Vitis vinifera][more]
gi|703087771|ref|XP_010093360.1|3.0e-1353.95ATP-dependent helicase 1 [Morus notabilis][more]
gi|985452899|ref|XP_006481138.2|8.8e-1338.94PREDICTED: uncharacterized protein LOC102612481 [Citrus sinensis][more]
gi|985470707|ref|XP_015381055.1|4.4e-1240.35PREDICTED: uncharacterized protein LOC107174567 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G007420.1ClCG11G007420.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 239..353
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G007420Cla002046Watermelon (97103) v1wcgwmB108
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G007420Cucurbita moschata (Rifu)cmowcgB697
ClCG11G007420Wild cucumber (PI 183967)cpiwcgB114
ClCG11G007420Cucumber (Chinese Long) v2cuwcgB107
ClCG11G007420Melon (DHL92) v3.5.1mewcgB371
ClCG11G007420Cucurbita pepo (Zucchini)cpewcgB096
ClCG11G007420Bottle gourd (USVL1VR-Ls)lsiwcgB086
ClCG11G007420Bottle gourd (USVL1VR-Ls)lsiwcgB082
ClCG11G007420Cucumber (Gy14) v2cgybwcgB106
ClCG11G007420Melon (DHL92) v3.6.1medwcgB366
ClCG11G007420Cucumber (Chinese Long) v3cucwcgB123
ClCG11G007420Watermelon (97103) v2wcgwmbB067
ClCG11G007420Wax gourdwcgwgoB149