Cla001418 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001418
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 15997713 .. 15999203 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTGCTTCCTCCATAGGAGGGGGAACCATAGAGACAAGGAAGAAGATCCAGGGATCAATCAGGCATTTATCCCTCCTCCTAACACATTTCAGCCAAGTTACGCTGAGATGGTATCAAAAGGACCAAGACATCACAACCACACAGATTGGAAGGCCCCCCCCCCCCCCCACACATTTAAATCCTCTGATTATGCACCCATTAAACAGAGCAAGTACCCTGAACGGATTGAAGGAAAACAGAGTCCTCAAGAAGACCCTGATTTGCCATGTGGGATGCAAAGCTCGAGCAAAGGAAAACAAAGTAGAATATCGAAATCAGTTCGGCGGCATGAAAGCCAGAATTCGGATGCGTTTTGGATTCAAAAAAATCAGGAGGTCTTCCAAGAAGATTTTAGCAACTTATGGGTGATATCGAGATTATTTGTTTTTGATGATTGGAATGCAAATAGAAATCAATTAGAAGAATCATTCAAGGTTAAATTTACCATGAATCCCCTGTTCTTAGATAAAGCGTTGATCAAGTGTGAGGAAGGAAGAATGGAAGATTGGTTCGGCACTCCCAGGAAATGGCAGGATTTCGGACAATTTCACTTATTAATTGAAAAATGGAACACTATTAAACATAGCCGGCCAGAATTCATCAGAGGATTCGAAGGTTGGCTCTCTATCAACAAACTTCCATTAGAATATTGGAGAAGGAGTACGTTTGAAGCCATTGGAGCTCACTTTGGGGGATTAGAAAGCATTGCACTTGAAACGCTTAACATGTTAAATTGCTCTGAAGCAAGAATTGAAGTTAAAAGGAACATATGTGGTTTGATGCCAGCAACAATTGAAATTGAAGATGAAAAGAGGGAAAATTTCTTTTTAAATTTCGGCGATATTGAGAGTTTAGAAGACTCCAAGCCTCATAAGAGTGCATTATTTCTTTCACACTTCTCAAATCCGATTAATTTACTCAGAATAAAGCAAGTCGCTCAAGTTGAAGACATTGAATTTGATTTTCCGGTTCAAAATTGGGCGTTCCTTCAACAAAAAATGCCAAATACCTCGAGAAATCCGTTTGCAGCCATGGAAAAACACTCTGACAAAAGTCCAAAAAGCTCGCCGGAGAAGATGAGGTCTGCGCCGGCGATTCTTCATTCAAGGGGATCCATCACCCCAAATCGAATCAATGTGAAACCGAAAAAGATGTTAGCAGTCGAGCATTTAATGAAGAAAATAAGTGCTGACGTTGGTTCGGATCCTAAGGAACGGTTCGACTCCTTGCATACTAATTATGAAGAAAATGAAAAGTCGAAGTCTGTGCCGAACTCTTGTCGTCCAAGTGGGTCCATCACCCCAAACCTAGTTAATGAAAAACCAAGGGAGGAGTCAGCAGACGTGCATTTATTGATGGAACAAAGTGCAGACGACCAGTCGGCTCCCAAGGACCTTTTCGAATTCCAGCCGCAAAATTTAAATCCAAGGTCGGCTCCCAAGAACTGA

mRNA sequence

ATGACTTGCTTCCTCCATAGGAGGGGGAACCATAGAGACAAGGAAGAAGATCCAGGGATCAATCAGGCATTTATCCCTCCTCCTAACACATTTCAGCCAAGTTACGCTGAGATGGTATCAAAAGGACCAAGACATCACAACCACACAGATTGGAAGGCCCCCCCCCCCCCCCACACATTTAAATCCTCTGATTATGCACCCATTAAACAGAGCAAGTACCCTGAACGGATTGAAGGAAAACAGAGTCCTCAAGAAGACCCTGATTTGCCATGTGGGATGCAAAGCTCGAGCAAAGGAAAACAAAGTAGAATATCGAAATCAGTTCGGCGGCATGAAAGCCAGAATTCGGATGCGTTTTGGATTCAAAAAAATCAGGAGGTCTTCCAAGAAGATTTTAGCAACTTATGGGTGATATCGAGATTATTTGTTTTTGATGATTGGAATGCAAATAGAAATCAATTAGAAGAATCATTCAAGGTTAAATTTACCATGAATCCCCTGTTCTTAGATAAAGCGTTGATCAAGTGTGAGGAAGGAAGAATGGAAGATTGGTTCGGCACTCCCAGGAAATGGCAGGATTTCGGACAATTTCACTTATTAATTGAAAAATGGAACACTATTAAACATAGCCGGCCAGAATTCATCAGAGGATTCGAAGGTTGGCTCTCTATCAACAAACTTCCATTAGAATATTGGAGAAGGAGTACGTTTGAAGCCATTGGAGCTCACTTTGGGGGATTAGAAAGCATTGCACTTGAAACGCTTAACATGTTAAATTGCTCTGAAGCAAGAATTGAAGTTAAAAGGAACATATGTGGTTTGATGCCAGCAACAATTGAAATTGAAGATGAAAAGAGGGAAAATTTCTTTTTAAATTTCGGCGATATTGAGAGTTTAGAAGACTCCAAGCCTCATAAGAGTGCATTATTTCTTTCACACTTCTCAAATCCGATTAATTTACTCAGAATAAAGCAAGTCGCTCAAGTTGAAGACATTGAATTTGATTTTCCGGTTCAAAATTGGGCGTTCCTTCAACAAAAAATGCCAAATACCTCGAGAAATCCGTTTGCAGCCATGGAAAAACACTCTGACAAAAGTCCAAAAAGCTCGCCGGAGAAGATGAGGTCTGCGCCGGCGATTCTTCATTCAAGGGGATCCATCACCCCAAATCGAATCAATGTGAAACCGAAAAAGATGTTAGCAGTCGAGCATTTAATGAAGAAAATAAGTGCTGACGTTGGTTCGGATCCTAAGGAACGGTTCGACTCCTTGCATACTAATTATGAAGAAAATGAAAAGTCGAAGTCTGTGCCGAACTCTTGTCGTCCAAGTGGGTCCATCACCCCAAACCTAGTTAATGAAAAACCAAGGGAGGAGTCAGCAGACGTGCATTTATTGATGGAACAAAGTGCAGACGACCAGTCGGCTCCCAAGGACCTTTTCGAATTCCAGCCGCAAAATTTAAATCCAAGGTCGGCTCCCAAGAACTGA

Coding sequence (CDS)

ATGACTTGCTTCCTCCATAGGAGGGGGAACCATAGAGACAAGGAAGAAGATCCAGGGATCAATCAGGCATTTATCCCTCCTCCTAACACATTTCAGCCAAGTTACGCTGAGATGGTATCAAAAGGACCAAGACATCACAACCACACAGATTGGAAGGCCCCCCCCCCCCCCCACACATTTAAATCCTCTGATTATGCACCCATTAAACAGAGCAAGTACCCTGAACGGATTGAAGGAAAACAGAGTCCTCAAGAAGACCCTGATTTGCCATGTGGGATGCAAAGCTCGAGCAAAGGAAAACAAAGTAGAATATCGAAATCAGTTCGGCGGCATGAAAGCCAGAATTCGGATGCGTTTTGGATTCAAAAAAATCAGGAGGTCTTCCAAGAAGATTTTAGCAACTTATGGGTGATATCGAGATTATTTGTTTTTGATGATTGGAATGCAAATAGAAATCAATTAGAAGAATCATTCAAGGTTAAATTTACCATGAATCCCCTGTTCTTAGATAAAGCGTTGATCAAGTGTGAGGAAGGAAGAATGGAAGATTGGTTCGGCACTCCCAGGAAATGGCAGGATTTCGGACAATTTCACTTATTAATTGAAAAATGGAACACTATTAAACATAGCCGGCCAGAATTCATCAGAGGATTCGAAGGTTGGCTCTCTATCAACAAACTTCCATTAGAATATTGGAGAAGGAGTACGTTTGAAGCCATTGGAGCTCACTTTGGGGGATTAGAAAGCATTGCACTTGAAACGCTTAACATGTTAAATTGCTCTGAAGCAAGAATTGAAGTTAAAAGGAACATATGTGGTTTGATGCCAGCAACAATTGAAATTGAAGATGAAAAGAGGGAAAATTTCTTTTTAAATTTCGGCGATATTGAGAGTTTAGAAGACTCCAAGCCTCATAAGAGTGCATTATTTCTTTCACACTTCTCAAATCCGATTAATTTACTCAGAATAAAGCAAGTCGCTCAAGTTGAAGACATTGAATTTGATTTTCCGGTTCAAAATTGGGCGTTCCTTCAACAAAAAATGCCAAATACCTCGAGAAATCCGTTTGCAGCCATGGAAAAACACTCTGACAAAAGTCCAAAAAGCTCGCCGGAGAAGATGAGGTCTGCGCCGGCGATTCTTCATTCAAGGGGATCCATCACCCCAAATCGAATCAATGTGAAACCGAAAAAGATGTTAGCAGTCGAGCATTTAATGAAGAAAATAAGTGCTGACGTTGGTTCGGATCCTAAGGAACGGTTCGACTCCTTGCATACTAATTATGAAGAAAATGAAAAGTCGAAGTCTGTGCCGAACTCTTGTCGTCCAAGTGGGTCCATCACCCCAAACCTAGTTAATGAAAAACCAAGGGAGGAGTCAGCAGACGTGCATTTATTGATGGAACAAAGTGCAGACGACCAGTCGGCTCCCAAGGACCTTTTCGAATTCCAGCCGCAAAATTTAAATCCAAGGTCGGCTCCCAAGAACTGA

Protein sequence

MTCFLHRRGNHRDKEEDPGINQAFIPPPNTFQPSYAEMVSKGPRHHNHTDWKAPPPPHTFKSSDYAPIKQSKYPERIEGKQSPQEDPDLPCGMQSSSKGKQSRISKSVRRHESQNSDAFWIQKNQEVFQEDFSNLWVISRLFVFDDWNANRNQLEESFKVKFTMNPLFLDKALIKCEEGRMEDWFGTPRKWQDFGQFHLLIEKWNTIKHSRPEFIRGFEGWLSINKLPLEYWRRSTFEAIGAHFGGLESIALETLNMLNCSEARIEVKRNICGLMPATIEIEDEKRENFFLNFGDIESLEDSKPHKSALFLSHFSNPINLLRIKQVAQVEDIEFDFPVQNWAFLQQKMPNTSRNPFAAMEKHSDKSPKSSPEKMRSAPAILHSRGSITPNRINVKPKKMLAVEHLMKKISADVGSDPKERFDSLHTNYEENEKSKSVPNSCRPSGSITPNLVNEKPREESADVHLLMEQSADDQSAPKDLFEFQPQNLNPRSAPKN

Homology

[Close]

BLAST of Cla001418 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 45/155 (29.03%), Postives = 78/155 (50.32%), Query Frame = 1


Query: 137 VISRLFVFDDWNANRNQLEESFKVKFTMNPLFLDKALIKCEEGRMEDWFGTPRKWQDFGQ 196
           V++R +  DDW     +L E      +  P   +KALI  ++    +     + W   G+
Sbjct: 133 VLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGR 192

Query: 197 FHLLIEKWNTIKHSRPEFIRGFEGWLSINKLPLEYWRRSTFEAIGAHFGGLESIALETLN 256
           F++  E+WN   H+ P+F+  + GW+ +  +PL  W   +F  IG   GG   +A ET  
Sbjct: 193 FYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRE 252

Query: 257 MLNCSEARIEVKRNICGLMPATIEIEDEKRENFFL 292
           + +  EA I VK N  G +PA I++ D++  ++ +
Sbjct: 253 LTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYII 287

[Close]

BLAST of Cla001418 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 39/139 (28.06%), Postives = 64/139 (46.04%), Query Frame = 1


Query: 153 QLEESFKVKFTMNPLFLDKALIKCEEGRMEDWFGTPRKWQDFGQFHLLIEKWNTIKHSRP 212
           +L+E     FT      +KAL+  E           R W    +F++  E+WNT+KH  P
Sbjct: 3   KLKEQTNWSFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSP 62

Query: 213 EFIRGFEGWLSINKLPLEYWRRSTFEAIGAHFGGLESIALETLNMLNCSEARIEVKRNIC 272
           + +  + GW++   + +  W   TF  IG   G    I  E    +   +A ++VK N  
Sbjct: 63  KLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFT 122

Query: 273 GLMPATIEIEDEKRENFFL 292
           G +PA I + D+K  +F +
Sbjct: 123 GFIPAFINVFDKKGNSFLV 141

[Close]

BLAST of Cla001418 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 45/155 (29.03%), Postives = 78/155 (50.32%), Query Frame = 1


Query: 137 VISRLFVFDDWNANRNQLEESFKVKFTMNPLFLDKALIKCEEGRMEDWFGTPRKWQDFGQ 196
           V++R +  DDW     +L E      +  P   +KALI  ++    +     + W   G+
Sbjct: 133 VLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGR 192

Query: 197 FHLLIEKWNTIKHSRPEFIRGFEGWLSINKLPLEYWRRSTFEAIGAHFGGLESIALETLN 256
           F++  E+WN   H+ P+F+  + GW+ +  +PL  W   +F  IG   GG   +A ET  
Sbjct: 193 FYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRE 252

Query: 257 MLNCSEARIEVKRNICGLMPATIEIEDEKRENFFL 292
           + +  EA I VK N  G +PA I++ D++  ++ +
Sbjct: 253 LTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYII 287

[Close]

BLAST of Cla001418 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 39/139 (28.06%), Postives = 64/139 (46.04%), Query Frame = 1


Query: 153 QLEESFKVKFTMNPLFLDKALIKCEEGRMEDWFGTPRKWQDFGQFHLLIEKWNTIKHSRP 212
           +L+E     FT      +KAL+  E           R W    +F++  E+WNT+KH  P
Sbjct: 3   KLKEQTNWSFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSP 62

Query: 213 EFIRGFEGWLSINKLPLEYWRRSTFEAIGAHFGGLESIALETLNMLNCSEARIEVKRNIC 272
           + +  + GW++   + +  W   TF  IG   G    I  E    +   +A ++VK N  
Sbjct: 63  KLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFT 122

Query: 273 GLMPATIEIEDEKRENFFL 292
           G +PA I + D+K  +F +
Sbjct: 123 GFIPAFINVFDKKGNSFLV 141

The following BLAST results are available for this feature:

BLAST of Cla001418 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	2.5e-16	29.03	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFP0_CUCSA	1.4e-11	28.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]

BLAST of Cla001418 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135793\|gb\|ADN33672.1\|	3.6e-16	29.03	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700192460\|gb\|KGN47664.1\|	2.0e-11	28.06	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001418	Cla001418.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 177..267 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001418	ClCG06G009830	Watermelon (Charleston Gray)	wcgwmB344

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001418	Cucurbita moschata (Rifu)	cmowmB281
Cla001418	Cucurbita moschata (Rifu)	cmowmB282
Cla001418	Melon (DHL92) v3.5.1	mewmB442
Cla001418	Watermelon (Charleston Gray)	wcgwmB349
Cla001418	Cucumber (Chinese Long) v2	cuwmB177
Cla001418	Cucurbita pepo (Zucchini)	cpewmB199
Cla001418	Cucumber (Gy14) v2	cgybwmB168
Cla001418	Melon (DHL92) v3.6.1	medwmB429
Cla001418	Cucumber (Chinese Long) v3	cucwmB189
Cla001418	Watermelon (97103) v2	wmwmbB406
Cla001418	Watermelon (97103) v2	wmwmbB410
Cla001418	Wax gourd	wgowmB103
Cla001418	Wax gourd	wgowmB108
Cla001418	Cucumber (Gy14) v1	cgywmB491
Cla001418	Cucurbita maxima (Rimu)	cmawmB289