Cla001417 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001417
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Poly(ADP-ribose) glycohydrolase 1 (AHRD V1 ***- A8MRN2_ARATH); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase
Location	Chr6 : 15990899 .. 15991234 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTGTCTCGTTTGAAAGGAAAGTACTTCCTTTGAACAATTGCACAGGAAACTTTTGTTGTCCGAAGGCCAATTTTTGGGTCAACTCCACCATTCCTCTCTGTCAATTCAAGGTAATAATTGACTTTGATTTATATGCTATTTTAATTATTGTGTGGCATCATACTTGTACGCTTTAATCTGTGGTAAATGATCAAGTTGGTCTTTTTTTCCCCATATAGGTTAAAGATTCTGGCCTAATAGAGGATCAAACATCCGGAGCTCTTGAAGTTGATTTTGCTAATGAGTATCTTGGTGGTGGTGCTCTTCATTCTGGCTGTGTGCAGGTCTAA

mRNA sequence

ATGGGCTTTGTCTCGTTTGAAAGGAAAGTACTTCCTTTGAACAATTGCACAGGAAACTTTTGTTGTCCGAAGGCCAATTTTTGGGTCAACTCCACCATTCCTCTCTGTCAATTCAAGGTTAAAGATTCTGGCCTAATAGAGGATCAAACATCCGGAGCTCTTGAAGTTGATTTTGCTAATGAGTATCTTGGTGGTGGTGCTCTTCATTCTGGCTGTGTGCAGGTCTAA

Coding sequence (CDS)

ATGGGCTTTGTCTCGTTTGAAAGGAAAGTACTTCCTTTGAACAATTGCACAGGAAACTTTTGTTGTCCGAAGGCCAATTTTTGGGTCAACTCCACCATTCCTCTCTGTCAATTCAAGGTTAAAGATTCTGGCCTAATAGAGGATCAAACATCCGGAGCTCTTGAAGTTGATTTTGCTAATGAGTATCTTGGTGGTGGTGCTCTTCATTCTGGCTGTGTGCAGGTCTAA

Protein sequence

MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFANEYLGGGALHSGCVQV

Homology

[Close]

BLAST of Cla001417 vs. Swiss-Prot
Match: PARG1_ARATH (Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-15
Identity = 41/74 (55.41%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           +G VSFERK+            P A+FW  S + LC FKV   GLIEDQ   ALEVDFAN
Sbjct: 208 IGIVSFERKIT---------AAPDADFWSKSDVSLCAFKVHSFGLIEDQPDNALEVDFAN 267

Query: 61  EYLGGGALHSGCVQ 75
           +YLGGG+L  GCVQ
Sbjct: 268 KYLGGGSLSRGCVQ 272

[Close]

BLAST of Cla001417 vs. Swiss-Prot
Match: PARG2_ARATH (Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-13
Identity = 39/73 (53.42%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 2   GFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFANE 61
           GFVSFERK+LPL         PKA+ W NS  PLC  ++  SG IEDQ   ALEVDFA+E
Sbjct: 211 GFVSFERKILPLEYHPHFVSYPKADSWANSVTPLCSIEIHTSGAIEDQPCEALEVDFADE 270

Query: 62  YLGGGALHSGCVQ 75
           Y GG  L    +Q
Sbjct: 271 YFGGLTLSYDTLQ 283

[Close]

BLAST of Cla001417 vs. TrEMBL
Match: A0A0A0LNA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123570 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-34
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           +GFVSFERKVLPLNNC G+FCCPKANFW+NSTIPLCQFKVKDSGLIEDQT GALEVDFAN
Sbjct: 90  VGFVSFERKVLPLNNCAGSFCCPKANFWINSTIPLCQFKVKDSGLIEDQTFGALEVDFAN 149

Query: 61  EYLGGGALHSGCVQ 75
           EYLGGGALHSGCVQ
Sbjct: 150 EYLGGGALHSGCVQ 163

[Close]

BLAST of Cla001417 vs. TrEMBL
Match: M5VQA0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004452mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-20
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1


Query: 2   GFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFANE 61
           G+VSFERKVLPL +   +   PKA+FW NS IPLC+F+V  SG IE+Q+SGALEVDFAN+
Sbjct: 215 GYVSFERKVLPLEHGPLSISYPKASFWSNSAIPLCRFEVHSSGFIENQSSGALEVDFANK 274

Query: 62  YLGGGALHSGCVQ 75
           Y+GGG LH GCVQ
Sbjct: 275 YIGGGVLHRGCVQ 287

[Close]

BLAST of Cla001417 vs. TrEMBL
Match: A0A0S3T6Q7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G234800 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-20
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           MG VSFERK L L N   +  CP ANFW  ST+PLC+F+V +SGLIEDQ+S A+EVDFAN
Sbjct: 205 MGIVSFERKTLHLKNDYTHISCPDANFWSTSTVPLCRFEVHNSGLIEDQSSEAVEVDFAN 264

Query: 61  EYLGGGALHSGCVQ 75
           +YLGGGAL  GCVQ
Sbjct: 265 KYLGGGALGRGCVQ 278

[Close]

BLAST of Cla001417 vs. TrEMBL
Match: A0A151SD07_CAJCA (Poly(ADP-ribose) glycohydrolase 1 OS=Cajanus cajan GN=KK1_025447 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-20
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           MG VSFERKVLP  N + +   P ANFW  S IPLC+F+V  SGLIEDQ+SGA+EVDFAN
Sbjct: 203 MGVVSFERKVLPFENDSIHISYPDANFWSKSDIPLCKFEVHSSGLIEDQSSGAVEVDFAN 262

Query: 61  EYLGGGALHSGCVQ 75
           +YLGGGAL  GCVQ
Sbjct: 263 KYLGGGALGRGCVQ 276

[Close]

BLAST of Cla001417 vs. TrEMBL
Match: A0A0L9TAJ2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan442s006100 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-20
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           MG VSFERK L L N   +  CP ANFW  ST+PLC+F+V +SGLIEDQ+S A+EVDFAN
Sbjct: 205 MGIVSFERKTLHLKNDYTHISCPDANFWSTSTVPLCRFEVHNSGLIEDQSSEAVEVDFAN 264

Query: 61  EYLGGGALHSGCVQ 75
           +YLGGGAL  GCVQ
Sbjct: 265 KYLGGGALGRGCVQ 278

[Close]

BLAST of Cla001417 vs. NCBI nr
Match: gi|449442353|ref|XP_004138946.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           +GFVSFERKVLPLNNC G+FCCPKANFW+NSTIPLCQFKVKDSGLIEDQT GALEVDFAN
Sbjct: 220 VGFVSFERKVLPLNNCAGSFCCPKANFWINSTIPLCQFKVKDSGLIEDQTFGALEVDFAN 279

Query: 61  EYLGGGALHSGCVQ 75
           EYLGGGALHSGCVQ
Sbjct: 280 EYLGGGALHSGCVQ 293

[Close]

BLAST of Cla001417 vs. NCBI nr
Match: gi|778668329|ref|XP_011649080.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           +GFVSFERKVLPLNNC G+FCCPKANFW+NSTIPLCQFKVKDSGLIEDQT GALEVDFAN
Sbjct: 154 VGFVSFERKVLPLNNCAGSFCCPKANFWINSTIPLCQFKVKDSGLIEDQTFGALEVDFAN 213

Query: 61  EYLGGGALHSGCVQ 75
           EYLGGGALHSGCVQ
Sbjct: 214 EYLGGGALHSGCVQ 227

[Close]

BLAST of Cla001417 vs. NCBI nr
Match: gi|700206327|gb|KGN61446.1| (hypothetical protein Csa_2G123570 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           +GFVSFERKVLPLNNC G+FCCPKANFW+NSTIPLCQFKVKDSGLIEDQT GALEVDFAN
Sbjct: 90  VGFVSFERKVLPLNNCAGSFCCPKANFWINSTIPLCQFKVKDSGLIEDQTFGALEVDFAN 149

Query: 61  EYLGGGALHSGCVQ 75
           EYLGGGALHSGCVQ
Sbjct: 150 EYLGGGALHSGCVQ 163

[Close]

BLAST of Cla001417 vs. NCBI nr
Match: gi|659082095|ref|XP_008441668.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           +GFVSFERKVLPLNNC G FCCPKANFW+NSTIPLCQF+VKDSGLIEDQT GALEVDFAN
Sbjct: 218 VGFVSFERKVLPLNNCAGYFCCPKANFWINSTIPLCQFRVKDSGLIEDQTFGALEVDFAN 277

Query: 61  EYLGGGALHSGCVQ 75
           EYLGGGALHSGCVQ
Sbjct: 278 EYLGGGALHSGCVQ 291

[Close]

BLAST of Cla001417 vs. NCBI nr
Match: gi|659082103|ref|XP_008441672.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1   MGFVSFERKVLPLNNCTGNFCCPKANFWVNSTIPLCQFKVKDSGLIEDQTSGALEVDFAN 60
           +GFVSFERKVLPLNNC G FCCPKANFW+NSTIPLCQF+VKDSGLIEDQT GALEVDFAN
Sbjct: 196 VGFVSFERKVLPLNNCAGYFCCPKANFWINSTIPLCQFRVKDSGLIEDQTFGALEVDFAN 255

Query: 61  EYLGGGALHSGCVQ 75
           EYLGGGALHSGCVQ
Sbjct: 256 EYLGGGALHSGCVQ 269

The following BLAST results are available for this feature:

BLAST of Cla001417 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PARG1_ARATH	6.7e-15	55.41	Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2	[more]
PARG2_ARATH	2.1e-13	53.42	Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2...	[more]

BLAST of Cla001417 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNA3_CUCSA	1.5e-34	93.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123570 PE=4 SV=1	[more]
M5VQA0_PRUPE	2.2e-20	67.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004452mg PE=4 SV=1	[more]
A0A0S3T6Q7_PHAAN	3.7e-20	67.57	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G234800 PE=...	[more]
A0A151SD07_CAJCA	3.7e-20	68.92	Poly(ADP-ribose) glycohydrolase 1 OS=Cajanus cajan GN=KK1_025447 PE=4 SV=1	[more]
A0A0L9TAJ2_PHAAN	3.7e-20	67.57	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan442s006100 PE=4 SV=1	[more]

BLAST of Cla001417 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442353\|ref\|XP_004138946.1\|	2.2e-34	93.24	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X1 [Cucumis sativus]	[more]
gi\|778668329\|ref\|XP_011649080.1\|	2.2e-34	93.24	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Cucumis sativus]	[more]
gi\|700206327\|gb\|KGN61446.1\|	2.2e-34	93.24	hypothetical protein Csa_2G123570 [Cucumis sativus]	[more]
gi\|659082095\|ref\|XP_008441668.1\|	1.1e-33	91.89	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X1 [Cucumis melo]	[more]
gi\|659082103\|ref\|XP_008441672.1\|	1.1e-33	91.89	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007724	Poly_GlycHdrlase

Vocabulary: **Molecular Function**
Term	Definition
GO:0004649	poly(ADP-ribose) glycohydrolase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004649	poly(ADP-ribose) glycohydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001417	Cla001417.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007724	Poly(ADP-ribose) glycohydrolase	PANTHER	PTHR12837	POLY ADP-RIBOSE GLYCOHYDROLASE	coord: 2..74 score: 5.0
IPR007724	Poly(ADP-ribose) glycohydrolase	PFAM	PF05028	PARG_cat	coord: 2..74 score: 3.1
None	No IPR available	PANTHER	PTHR12837:SF0	POLY(ADP-RIBOSE) GLYCOHYDROLASE	coord: 2..74 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001417	Cla97C06G119350	Watermelon (97103) v2	wmwmbB406
Cla001417	ClCG06G009820	Watermelon (Charleston Gray)	wcgwmB344
Cla001417	CmoCh15G015190	Cucurbita moschata (Rifu)	cmowmB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001417	Cucumber (Chinese Long) v3	cucwmB189
Cla001417	Watermelon (97103) v2	wmwmbB410
Cla001417	Wax gourd	wgowmB103
Cla001417	Wax gourd	wgowmB108
Cla001417	Cucumber (Gy14) v1	cgywmB491
Cla001417	Cucurbita maxima (Rimu)	cmawmB289
Cla001417	Cucurbita moschata (Rifu)	cmowmB281
Cla001417	Melon (DHL92) v3.5.1	mewmB442
Cla001417	Watermelon (Charleston Gray)	wcgwmB349
Cla001417	Cucumber (Chinese Long) v2	cuwmB177
Cla001417	Cucurbita pepo (Zucchini)	cpewmB199
Cla001417	Cucumber (Gy14) v2	cgybwmB168
Cla001417	Melon (DHL92) v3.6.1	medwmB429