Cla001245 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001245
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related
Location	Chr2 : 7517354 .. 7517610 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAGTTAGTGTCCTGTCCCTCCATTAATAACCACTCTGGCTGCTTATGCTCAGAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

mRNA sequence

ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

Coding sequence (CDS)

ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

Protein sequence

MANQNPILHCPHLRRKLPNYTAAHNAIRAKNYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMSL

Homology

[Close]

BLAST of Cla001245 vs. TrEMBL
Match: A0A0A0K7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070232 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-10
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 11  PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
           P L +  P NY  AHNA+R                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 30  PSLAKSSPKNYIDAHNAVRAAVGVEPLHWNSTLADYAQNYANTKIATCQMEHSGGPYGEN 89

[Close]

BLAST of Cla001245 vs. NCBI nr
Match: gi|659110139|ref|XP_008455069.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-10
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 1


Query: 11 PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
          P L +  P NY  AHNAIR                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 24 PILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYAQNYANTKIATCQMEHSGGPYGEN 83

[Close]

BLAST of Cla001245 vs. NCBI nr
Match: gi|778724756|ref|XP_004137080.2| (PREDICTED: pathogenesis-related protein 1A-like [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 11  PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
           P L +  P NY  AHNA+R                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 30  PSLAKSSPKNYIDAHNAVRAAVGVEPLHWNSTLADYAQNYANTKIATCQMEHSGGPYGEN 89

[Close]

BLAST of Cla001245 vs. NCBI nr
Match: gi|1009150276|ref|XP_015892934.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Ziziphus jujuba])

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 33/68 (48.53%), Postives = 37/68 (54.41%), Query Frame = 1


Query: 15 RKLPN--YTAAHNAIRAK-----------------NYANTKITTCKMEHSRGPYGENLTK 64
          RK PN  +  AHNA RA+                 NYAN KI  C+MEHS GPYGENL +
Sbjct: 29 RKNPNQDFVRAHNAARAQVGVGPITWNWTVAAYAQNYANQKINNCEMEHSGGPYGENLAE 88

The following BLAST results are available for this feature:

BLAST of Cla001245 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7N5_CUCSA	4.1e-10	51.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070232 PE=3 SV=1	[more]

BLAST of Cla001245 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110139\|ref\|XP_008455069.1\|	4.5e-10	52.63	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo]	[more]
gi\|778724756\|ref\|XP_004137080.2\|	5.8e-10	51.32	PREDICTED: pathogenesis-related protein 1A-like [Cucumis sativus]	[more]
gi\|1009150276\|ref\|XP_015892934.1\|	5.1e-06	48.53	PREDICTED: basic form of pathogenesis-related protein 1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014044	CAP_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005615	extracellular space
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001245	Cla001245.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014044	CAP domain	GENE3D	G3DSA:3.40.33.10		coord: 27..64 score: 1.
IPR014044	CAP domain	unknown	SSF55797	PR-1-like	coord: 21..65 score: 3.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001245	Cla97C02G034080	Watermelon (97103) v2	wmwmbB322
Cla001245	ClCG02G007260	Watermelon (Charleston Gray)	wcgwmB203
Cla001245	CSPI07G06600	Wild cucumber (PI 183967)	cpiwmB626
Cla001245	Cucsa.218900	Cucumber (Gy14) v1	cgywmB428
Cla001245	Lsi03G006240	Bottle gourd (USVL1VR-Ls)	lsiwmB269
Cla001245	MELO3C018545.2	Melon (DHL92) v3.6.1	medwmB236
Cla001245	CsaV3_7G007550	Cucumber (Chinese Long) v3	cucwmB638
Cla001245	Bhi05G000841	Wax gourd	wgowmB286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001245	Melon (DHL92) v3.5.1	mewmB240
Cla001245	Melon (DHL92) v3.5.1	mewmB537
Cla001245	Watermelon (Charleston Gray)	wcgwmB198
Cla001245	Cucumber (Chinese Long) v2	cuwmB605
Cla001245	Cucurbita pepo (Zucchini)	cpewmB268
Cla001245	Cucurbita pepo (Zucchini)	cpewmB453
Cla001245	Cucurbita pepo (Zucchini)	cpewmB665
Cla001245	Bottle gourd (USVL1VR-Ls)	lsiwmB268
Cla001245	Cucumber (Gy14) v2	cgybwmB567
Cla001245	Melon (DHL92) v3.6.1	medwmB232
Cla001245	Melon (DHL92) v3.6.1	medwmB522
Cla001245	Silver-seed gourd	carwmB0375
Cla001245	Silver-seed gourd	carwmB0455
Cla001245	Silver-seed gourd	carwmB0733
Cla001245	Cucumber (Chinese Long) v3	cucwmB635
Cla001245	Watermelon (97103) v2	wmwmbB317
Cla001245	Wax gourd	wgowmB275
Cla001245	Watermelon (97103) v1	wmwmB054
Cla001245	Cucumber (Gy14) v1	cgywmB427
Cla001245	Cucurbita maxima (Rimu)	cmawmB127
Cla001245	Cucurbita maxima (Rimu)	cmawmB503
Cla001245	Cucurbita maxima (Rimu)	cmawmB725
Cla001245	Cucurbita moschata (Rifu)	cmowmB109
Cla001245	Cucurbita moschata (Rifu)	cmowmB496
Cla001245	Cucurbita moschata (Rifu)	cmowmB721