Cla001076 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001076
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ribulose bisphosphate carboxylase large chain 2 (AHRD V1 ***- Q8MGP8_TRIVT); contains Interpro domain(s) IPR017444 Ribulose bisphosphate carboxylase, large subunit, N-terminal
Location	Chr3 : 14389323 .. 14389784 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGTACGGACATTGTGAAATCTTGTGAGGAATTTTGTGATTGTTTTGAGGGTTTTAAAAGGTCGTAG

mRNA sequence

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGTACGGACATTGTGAAATCTTGTGAGGAATTTTGTGATTGTTTTGAGGGTTTTAAAAGGTCGTAG

Coding sequence (CDS)

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGTACGGACATTGTGAAATCTTGTGAGGAATTTTGTGATTGTTTTGAGGGTTTTAAAAGGTCGTAG

Protein sequence

MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGTDIVKSCEEFCDCFEGFKRS

Homology

[Close]

BLAST of Cla001076 vs. Swiss-Prot
Match: RBL_CICIN (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.3e-69
Identity = 126/126 (100.00%), Postives = 124/126 (98.41%), Query Frame = 1


Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFG 134
           VGNVFG
Sbjct: 121 VGNVFG 126

[Close]

BLAST of Cla001076 vs. Swiss-Prot
Match: RBL_LACSA (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 3.3e-69
Identity = 126/126 (100.00%), Postives = 124/126 (98.41%), Query Frame = 1


Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFG 134
           VGNVFG
Sbjct: 121 VGNVFG 126

[Close]

BLAST of Cla001076 vs. Swiss-Prot
Match: RBL_FLABI (Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.3e-69
Identity = 125/126 (99.21%), Postives = 124/126 (98.41%), Query Frame = 1


Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFG 134
           VGNVFG
Sbjct: 121 VGNVFG 126

[Close]

BLAST of Cla001076 vs. Swiss-Prot
Match: RBL_BARSO (Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida GN=rbcL PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.3e-69
Identity = 125/126 (99.21%), Postives = 124/126 (98.41%), Query Frame = 1


Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFG 134
           VGNVFG
Sbjct: 121 VGNVFG 126

[Close]

BLAST of Cla001076 vs. Swiss-Prot
Match: RBL_FLAPR (Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei GN=rbcL PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.3e-69
Identity = 125/126 (99.21%), Postives = 124/126 (98.41%), Query Frame = 1


Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSVTNMFTSI 127
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQYIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQYIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 128 VGNVFG 134
           VGNVFG
Sbjct: 121 VGNVFG 126

[Close]

BLAST of Cla001076 vs. TrEMBL
Match: A0A0C9S5Z3_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12312_3435 transcribed RNA sequence OS=Wollemia nobilis PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 9.3e-71
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TN+FTSIVGNVFG
Sbjct: 121 TNLFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. TrEMBL
Match: A0A0H3VXZ0_9POAL (Ribulose bisphosphate carboxylase large chain OS=Pariana sp. PFM-2015 GN=rbcL PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. TrEMBL
Match: A0A143FUV7_9LILI (Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit OS=Licuala paludosa GN=rbcL PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. TrEMBL
Match: A0A0H3VVG5_9POAL (Ribulose bisphosphate carboxylase large chain OS=Chusquea sp. PFM-2015 GN=rbcL PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. TrEMBL
Match: H6T1M0_9POAL (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Potarophytum riparium GN=rbcL PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. NCBI nr
Match: gi|74027109|gb|AAZ94659.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.7e-70
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. NCBI nr
Match: gi|821158933|gb|AKH04857.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Pariana sp. PFM-2015])

HSP 1 Score: 270.4 bits (690), Expect = 1.9e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. NCBI nr
Match: gi|734309146|gb|KHM99324.1| (Ribulose bisphosphate carboxylase large chain [Glycine soja])

HSP 1 Score: 270.4 bits (690), Expect = 1.9e-69
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTP+YETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG+EPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. NCBI nr
Match: gi|1015811109|gb|AMW66238.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Licuala paludosa])

HSP 1 Score: 270.4 bits (690), Expect = 1.9e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

[Close]

BLAST of Cla001076 vs. NCBI nr
Match: gi|374975206|gb|AFA27693.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid) [Potarophytum riparium])

HSP 1 Score: 270.4 bits (690), Expect = 1.9e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLFEEGSV 120
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLFEEGSV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSV 120

Query: 121 TNMFTSIVGNVFG 134
           TNMFTSIVGNVFG
Sbjct: 121 TNMFTSIVGNVFG 133

The following BLAST results are available for this feature:

BLAST of Cla001076 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBL_CICIN	3.3e-69	100.00	Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 ...	[more]
RBL_LACSA	3.3e-69	100.00	Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=...	[more]
RBL_FLABI	7.3e-69	99.21	Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 ...	[more]
RBL_BARSO	7.3e-69	99.21	Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida GN=rbcL PE=...	[more]
RBL_FLAPR	7.3e-69	99.21	Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei GN=rbcL PE=3 ...	[more]

BLAST of Cla001076 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0C9S5Z3_9SPER	9.3e-71	98.50	TSA: Wollemia nobilis Ref_Wollemi_Transcript_12312_3435 transcribed RNA sequence...	[more]
A0A0H3VXZ0_9POAL	1.3e-69	98.50	Ribulose bisphosphate carboxylase large chain OS=Pariana sp. PFM-2015 GN=rbcL PE...	[more]
A0A143FUV7_9LILI	1.3e-69	98.50	Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit OS=Licuala paludos...	[more]
A0A0H3VVG5_9POAL	1.3e-69	98.50	Ribulose bisphosphate carboxylase large chain OS=Chusquea sp. PFM-2015 GN=rbcL P...	[more]
H6T1M0_9POAL	1.3e-69	98.50	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Pota...	[more]

BLAST of Cla001076 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|74027109\|gb\|AAZ94659.1\|	1.7e-70	99.25	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus]	[more]
gi\|821158933\|gb\|AKH04857.1\|	1.9e-69	98.50	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Pariana...	[more]
gi\|734309146\|gb\|KHM99324.1\|	1.9e-69	96.99	Ribulose bisphosphate carboxylase large chain [Glycine soja]	[more]
gi\|1015811109\|gb\|AMW66238.1\|	1.9e-69	98.50	ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Licuala...	[more]
gi\|374975206\|gb\|AFA27693.1\|	1.9e-69	98.50	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid)...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017443	RuBisCO_lsu_fd_N

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation

Vocabulary: **Molecular Function**
Term	Definition
GO:0016984	ribulose-bisphosphate carboxylase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015977	carbon fixation
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001076	Cla001076.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	GENE3D	G3DSA:3.30.70.150		coord: 29..138 score: 1.6
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 31..139 score: 9.5
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	unknown	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 16..138 score: 1.44
None	No IPR available	PANTHER	PTHR23321	RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR	coord: 32..133 score: 3.0
None	No IPR available	PANTHER	PTHR23321:SF33	SUBFAMILY NOT NAMED	coord: 32..133 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001076	Cla97C03G060940	Watermelon (97103) v2	wmwmbB126
Cla001076	ClCG03G010150	Watermelon (Charleston Gray)	wcgwmB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001076	Wax gourd	wgowmB661