ClCG03G010150 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G010150
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRibulose bisphosphate carboxylase large chain
LocationCG_Chr03 : 17265323 .. 17265655 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGAGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGATGCTAAATCTTCTACCGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATTCTATTGAGTCTGACTCATAG

mRNA sequence

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGAGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGATGCTAAATCTTCTACCGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATTCTATTGAGTCTGACTCATAG

Coding sequence (CDS)

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTATAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGAGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGATGCTAAATCTTCTACCGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATTCTATTGAGTCTGACTCATAG

Protein sequence

MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEAGAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYSIESDS
Homology
[Close]
BLAST of ClCG03G010150 vs. Swiss-Prot
Match: RBL_LACSA (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-50
Identity = 94/97 (96.91%), Postives = 93/97 (95.88%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEAGAAVDAK 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEAGAAV A+
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 97

[Close]
BLAST of ClCG03G010150 vs. Swiss-Prot
Match: RBL_CICIN (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-50
Identity = 94/97 (96.91%), Postives = 93/97 (95.88%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEAGAAVDAK 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEAGAAV A+
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 97

[Close]
BLAST of ClCG03G010150 vs. Swiss-Prot
Match: RBL_FLABI (Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.3e-50
Identity = 93/97 (95.88%), Postives = 93/97 (95.88%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEAGAAVDAK 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEAGAAV A+
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQY
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQY 97

[Close]
BLAST of ClCG03G010150 vs. Swiss-Prot
Match: RBL_FLAPR (Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei GN=rbcL PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.3e-50
Identity = 93/97 (95.88%), Postives = 93/97 (95.88%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEAGAAVDAK 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEAGAAV A+
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQY
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQY 97

[Close]
BLAST of ClCG03G010150 vs. Swiss-Prot
Match: RBL_BARSO (Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida GN=rbcL PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.3e-50
Identity = 93/97 (95.88%), Postives = 93/97 (95.88%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEAGAAVDAK 67
           MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEAGAAV A+
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQY
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQY 97

[Close]
BLAST of ClCG03G010150 vs. TrEMBL
Match: A0A0C9S5Z3_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12312_3435 transcribed RNA sequence OS=Wollemia nobilis PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.3e-52
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 104

[Close]
BLAST of ClCG03G010150 vs. TrEMBL
Match: A0A0A8XQ33_ARUDO (RbcL, OrsajCp033 OS=Arundo donax PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.9e-51
Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCY IEPVPGEE+QY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEEDQY 104

[Close]
BLAST of ClCG03G010150 vs. TrEMBL
Match: A0A0H3VYE9_9POAL (Ribulose bisphosphate carboxylase large chain OS=Pariana radiciflora GN=rbcL PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQY 104

[Close]
BLAST of ClCG03G010150 vs. TrEMBL
Match: A0A0H3VXZ0_9POAL (Ribulose bisphosphate carboxylase large chain OS=Pariana sp. PFM-2015 GN=rbcL PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQY 104

[Close]
BLAST of ClCG03G010150 vs. TrEMBL
Match: A0A0K1LXD0_ANACO (Ribulose bisphosphate carboxylase large chain OS=Ananas comosus GN=rbcL PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQY 104

[Close]
BLAST of ClCG03G010150 vs. TAIR10
Match: ATCG00490.1 (ATCG00490.1 ribulose-bisphosphate carboxylases)

HSP 1 Score: 189.9 bits (481), Expect = 8.4e-49
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEAGAAVDAK 67
           MSPQTETKASVGFKAGVK+YKLTYYTPEYETKDTDILAAFRVTPQP VPPEEAGAAV A+
Sbjct: 1   MSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           SSTGTWTTVWTDGLTSLDRYKGRCY IEPVPGEE Q+
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEETQF 97

[Close]
BLAST of ClCG03G010150 vs. NCBI nr
Match: gi|74027109|gb|AAZ94659.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-51
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCYGIEPV GEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQY 104

[Close]
BLAST of ClCG03G010150 vs. NCBI nr
Match: gi|910750193|gb|AKU47140.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Ananas comosus])

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQY 104

[Close]
BLAST of ClCG03G010150 vs. NCBI nr
Match: gi|734309146|gb|KHM99324.1| (Ribulose bisphosphate carboxylase large chain [Glycine soja])

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREG MSPQTETKASVGFKAGVKDYKLTYYTP+YETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCYG+EPV GEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQY 104

[Close]
BLAST of ClCG03G010150 vs. NCBI nr
Match: gi|1015811109|gb|AMW66238.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Licuala paludosa])

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQY 104

[Close]
BLAST of ClCG03G010150 vs. NCBI nr
Match: gi|374975206|gb|AFA27693.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid) [Potarophytum riparium])

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPRVPPEEA 60
           MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQP VPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVDAKSSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQY 105
           GAAV A+SSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQY
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQY 104

The following BLAST results are available for this feature:
BLAST of ClCG03G010150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBL_LACSA4.2e-5096.91Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=... [more]
RBL_CICIN4.2e-5096.91Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 ... [more]
RBL_FLABI9.3e-5095.88Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 ... [more]
RBL_FLAPR9.3e-5095.88Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei GN=rbcL PE=3 ... [more]
RBL_BARSO9.3e-5095.88Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida GN=rbcL PE=... [more]
BLAST of ClCG03G010150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0C9S5Z3_9SPER5.3e-5296.15TSA: Wollemia nobilis Ref_Wollemi_Transcript_12312_3435 transcribed RNA sequence... [more]
A0A0A8XQ33_ARUDO5.9e-5195.19RbcL, OrsajCp033 OS=Arundo donax PE=3 SV=1[more]
A0A0H3VYE9_9POAL1.7e-5095.19Ribulose bisphosphate carboxylase large chain OS=Pariana radiciflora GN=rbcL PE=... [more]
A0A0H3VXZ0_9POAL1.7e-5095.19Ribulose bisphosphate carboxylase large chain OS=Pariana sp. PFM-2015 GN=rbcL PE... [more]
A0A0K1LXD0_ANACO1.7e-5095.19Ribulose bisphosphate carboxylase large chain OS=Ananas comosus GN=rbcL PE=3 SV=... [more]
BLAST of ClCG03G010150 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00490.18.4e-4992.78ATCG00490.1 ribulose-bisphosphate carboxylases[more]
BLAST of ClCG03G010150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|74027109|gb|AAZ94659.1|2.2e-5196.15ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus][more]
gi|910750193|gb|AKU47140.1|2.5e-5095.19ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Ana... [more]
gi|734309146|gb|KHM99324.1|2.5e-5093.27Ribulose bisphosphate carboxylase large chain [Glycine soja][more]
gi|1015811109|gb|AMW66238.1|2.5e-5095.19ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Licuala... [more]
gi|374975206|gb|AFA27693.1|2.5e-5095.19ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid)... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017443RuBisCO_lsu_fd_N
Vocabulary: Biological Process
TermDefinition
GO:0015977carbon fixation
Vocabulary: Molecular Function
TermDefinition
GO:0016984ribulose-bisphosphate carboxylase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0015977 carbon fixation
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G010150.1ClCG03G010150.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalGENE3DG3DSA:3.30.70.150coord: 29..105
score: 4.3
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalPFAMPF02788RuBisCO_large_Ncoord: 31..104
score: 4.5
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalunknownSSF54966RuBisCO, large subunit, small (N-terminal) domaincoord: 16..105
score: 2.49
NoneNo IPR availablePANTHERPTHR23321RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLARcoord: 32..104
score: 1.4
NoneNo IPR availablePANTHERPTHR23321:SF33SUBFAMILY NOT NAMEDcoord: 32..104
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G010150Cla001076Watermelon (97103) v1wcgwmB225
ClCG03G010150Cla97C03G060940Watermelon (97103) v2wcgwmbB186
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G010150Cucumber (Chinese Long) v3cucwcgB041
ClCG03G010150Wax gourdwcgwgoB369
ClCG03G010150Cucumber (Gy14) v1cgywcgB605
ClCG03G010150Wild cucumber (PI 183967)cpiwcgB041
ClCG03G010150Cucumber (Chinese Long) v2cuwcgB038
ClCG03G010150Bottle gourd (USVL1VR-Ls)lsiwcgB361
ClCG03G010150Cucumber (Gy14) v2cgybwcgB036