Cla001013 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001013
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DNA mismatch repair protein MLH1 (AHRD V1 *- E9CDW3_CAPO3); contains Interpro domain(s) IPR011186 DNA mismatch repair protein Mlh1
Location	Chr8 : 11664076 .. 11664884 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCAGCAAGTTTTACGTCGGTTTGCTCATTTTAATGCAATACAATTAAGCAACCCAGCCCCTCTATTCGAGTTATTTATTTTGGCACTGAAGGAGGAAAATGCAAATTCAGAGTGTGAGAATGATGATTTTAATGAGAAGGTAGCTGAGGTAACATGGTGTCCTCTCTGATATATCCTTTTAAGGCATAAAATAGTACTTTCGTCCGTTATAGCTTCTTGTTTTATATGGCTAAATACTGCCCCTGTTTCTTAGACGAGTACAAAACTGCTCAAGTTGAAAGCTGAAATGCTGGAGGAATTTTTCTGCATACATATTGACAGAAATGGGAATTTGGATAGAATTCCGGTCGTACTTGACCAATACACACCTGATATGGACCGTGTTCCTGAGTTTATGCTTTCTTTGGCTAATGATGTAAGTTCTTATATGCTCAATTTTTTTGTCACTACATAAATTCATTTGTTCCATTATCCTTTTGATCATGGTTTCAACTATTCATTTGTCTATGATGCATGGTATTTGTTAAGTATTAATTTGGGCATGTTGAAAATAAAAAGAGAATATTTGGGAGATTTTGTAGATTTTATTTCTTTCCTTTTTTTCCAATATTTGTTCCTTGTATAGATATTTGGTCTCTATTTATTTTTCCCCCTTGTAACATTTGTGTGTATCAAATTAATAATAAGAGAAAAGTTGTATCGTGGTTTTTTCTCCTTGAACTAGGGTTTTCCACGTAAACCTTGTGTCTTTTTTGTCTTCCCTCTTTTTCATTATGGTATCAGAGCGTGGTGATGAAATCCTAG

mRNA sequence

ATGTACCAGCAAGTTTTACGTCGGTTTGCTCATTTTAATGCAATACAATTAAGCAACCCAGCCCCTCTATTCGAGTTATTTATTTTGGCACTGAAGGAGGAAAATGCAAATTCAGAGTGTGAGAATGATGATTTTAATGAGAAGGTAGCTGAGACGAGTACAAAACTGCTCAAGTTGAAAGCTGAAATGCTGGAGGAATTTTTCTGCATACATATTGACAGAAATGGGAATTTGGATAGAATTCCGGTCGTACTTGACCAATACACACCTGATATGGACCGTGTTCCTGAGTTTATGCTTTCTTTGGCTAATGATAGCGTGGTGATGAAATCCTAG

Coding sequence (CDS)

ATGTACCAGCAAGTTTTACGTCGGTTTGCTCATTTTAATGCAATACAATTAAGCAACCCAGCCCCTCTATTCGAGTTATTTATTTTGGCACTGAAGGAGGAAAATGCAAATTCAGAGTGTGAGAATGATGATTTTAATGAGAAGGTAGCTGAGACGAGTACAAAACTGCTCAAGTTGAAAGCTGAAATGCTGGAGGAATTTTTCTGCATACATATTGACAGAAATGGGAATTTGGATAGAATTCCGGTCGTACTTGACCAATACACACCTGATATGGACCGTGTTCCTGAGTTTATGCTTTCTTTGGCTAATGATAGCGTGGTGATGAAATCCTAG

Protein sequence

MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLKAEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLANDSVVMKS

Homology

[Close]

BLAST of Cla001013 vs. Swiss-Prot
Match: MLH1_ARATH (DNA mismatch repair protein MLH1 OS=Arabidopsis thaliana GN=MLH1 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-34
Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECEN-DDFNEKVAETSTKLLKL 60
           MYQQ LRRFAHFNAIQLS+PAPL EL +LALKEE+ +   +  DD  E++AE +T+LLK 
Sbjct: 511 MYQQTLRRFAHFNAIQLSDPAPLSELILLALKEEDLDPGNDTKDDLKERIAEMNTELLKE 570

Query: 61  KAEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           KAEMLEE+F +HID + NL R+PV+LDQYTPDMDRVPEF+L L ND
Sbjct: 571 KAEMLEEYFSVHIDSSANLSRLPVILDQYTPDMDRVPEFLLCLGND 616

[Close]

BLAST of Cla001013 vs. Swiss-Prot
Match: MLH1_MOUSE (DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 1


Query: 2   YQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLKA 61
           YQ ++  FA+F  ++LS PAPLF+L +LAL +   +   E+D   E +AE   + LK KA
Sbjct: 565 YQILIYDFANFGVLRLSEPAPLFDLAMLAL-DSPESGWTEDDGPKEGLAEYIVEFLKKKA 624

Query: 62  EMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           EML ++F + ID  GNL  +P+++D Y P ++ +P F+L LA +
Sbjct: 625 EMLADYFSVEIDEEGNLIGLPLLIDSYVPPLEGLPIFILRLATE 667

[Close]

BLAST of Cla001013 vs. Swiss-Prot
Match: MLH1_HUMAN (DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1


Query: 2   YQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLKA 61
           YQ ++  FA+F  ++LS PAPLF+L +LAL +   +   E D   E +AE   + LK KA
Sbjct: 561 YQILIYDFANFGVLRLSEPAPLFDLAMLAL-DSPESGWTEEDGPKEGLAEYIVEFLKKKA 620

Query: 62  EMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           EML ++F + ID  GNL  +P+++D Y P ++ +P F+L LA +
Sbjct: 621 EMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRLATE 663

[Close]

BLAST of Cla001013 vs. Swiss-Prot
Match: MLH1_RAT (DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-14
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1


Query: 2   YQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLKA 61
           YQ ++  FA+F  ++L  PAPLF+  +LAL +   +   E D   E +AE   + LK KA
Sbjct: 563 YQILIYDFANFGVLRLPEPAPLFDFAMLAL-DSPESGWTEEDGPKEGLAEYIVEFLKKKA 622

Query: 62  EMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           +ML ++F + ID  GNL  +P+++D Y P ++ +P F+L LA +
Sbjct: 623 KMLADYFSVEIDEEGNLIGLPLLIDSYVPPLEGLPIFILRLATE 665

[Close]

BLAST of Cla001013 vs. Swiss-Prot
Match: MLH1_DICDI (DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum GN=mlh1 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-12
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1


Query: 2   YQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLKA 61
           YQ  L RF+ F++I+ S    ++ L +++L +   +   E+D   +K+A+  TKLL  K 
Sbjct: 681 YQLSLLRFSDFDSIKFSQSLSIYSLLLVSL-DSPLSGWMESDGPKDKIADYLTKLLISKK 740

Query: 62  EMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           E+L E+F I I+ +G L  IP VLD Y P  D +P F+L LA +
Sbjct: 741 ELLNEYFSIEINEDGELVGIPQVLDHYVPCTDNLPIFLLKLATE 783

[Close]

BLAST of Cla001013 vs. TrEMBL
Match: A0A0A0K8W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016960 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.8e-51
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLK 60
           MYQQVLRRFAHFNAIQLSNPAPLFEL ILALKEENANSECENDDFNEKVAETSTKLLKLK
Sbjct: 392 MYQQVLRRFAHFNAIQLSNPAPLFELLILALKEENANSECENDDFNEKVAETSTKLLKLK 451

Query: 61  AEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           AEMLEEFFCIHIDRNGNL R+PVVLDQYTPDMDRVPEFMLSLAND
Sbjct: 452 AEMLEEFFCIHIDRNGNLARLPVVLDQYTPDMDRVPEFMLSLAND 496

[Close]

BLAST of Cla001013 vs. TrEMBL
Match: A0A097PJN1_PLAAC (MLH1 (Fragment) OS=Platanus acerifolia PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSEC-ENDDFNEKVAETSTKLLKL 60
           MYQQVLRRFAHFNAIQLS+PAP+ EL ++ALKEE+ + EC ENDD  EK+AE +T+LLK 
Sbjct: 480 MYQQVLRRFAHFNAIQLSDPAPIPELIMMALKEEDLDPECNENDDLKEKIAEMNTELLKQ 539

Query: 61  KAEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           KAEMLEE+FCIHID+ GNL R+PV+LDQYTPDMD VPEF+L L ND
Sbjct: 540 KAEMLEEYFCIHIDQQGNLSRLPVILDQYTPDMDHVPEFVLCLGND 585

[Close]

BLAST of Cla001013 vs. TrEMBL
Match: A0A097PJI6_AQUCA (MLH1 (Fragment) OS=Aquilegia coerulea PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.4e-36
Identity = 76/106 (71.70%), Postives = 90/106 (84.91%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECE-NDDFNEKVAETSTKLLKL 60
           MYQQVLRRFAHFNAIQLS+PAPL+EL  +ALKEE  +SEC+ ND   EK+AE +T LLK 
Sbjct: 483 MYQQVLRRFAHFNAIQLSDPAPLYELITMALKEEELDSECKGNDHLKEKIAEMNTDLLKQ 542

Query: 61  KAEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           KAE+LEE+FCIHID+ GNL R+PV+LDQYTP+MD VPEF+L L ND
Sbjct: 543 KAELLEEYFCIHIDKQGNLCRLPVILDQYTPNMDHVPEFVLCLGND 588

[Close]

BLAST of Cla001013 vs. TrEMBL
Match: A0A097PJL8_PRUPE (MLH1 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.4e-36
Identity = 75/106 (70.75%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSEC-ENDDFNEKVAETSTKLLKL 60
           MYQQVLRRFAHFNAIQ+S PAP+ EL +LALKE N + EC EN + NEK+AE + +LLK 
Sbjct: 470 MYQQVLRRFAHFNAIQISEPAPVKELIVLALKEGNLDPECSENVELNEKIAEMNMELLKQ 529

Query: 61  KAEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           KA+M+EE+FCIHID++GNL R+PV+LDQYTPDMDRVPEF+L L ND
Sbjct: 530 KADMIEEYFCIHIDKDGNLSRLPVILDQYTPDMDRVPEFVLCLGND 575

[Close]

BLAST of Cla001013 vs. TrEMBL
Match: M5XLJ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002197mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.4e-36
Identity = 75/106 (70.75%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSEC-ENDDFNEKVAETSTKLLKL 60
           MYQQVLRRFAHFNAIQ+S PAP+ EL +LALKE N + EC EN + NEK+AE + +LLK 
Sbjct: 472 MYQQVLRRFAHFNAIQISEPAPVKELIVLALKEGNLDPECSENVELNEKIAEMNMELLKQ 531

Query: 61  KAEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           KA+M+EE+FCIHID++GNL R+PV+LDQYTPDMDRVPEF+L L ND
Sbjct: 532 KADMIEEYFCIHIDKDGNLSRLPVILDQYTPDMDRVPEFVLCLGND 577

[Close]

BLAST of Cla001013 vs. NCBI nr
Match: gi|778709830|ref|XP_011656465.1| (PREDICTED: DNA mismatch repair protein MLH1 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLK 60
           MYQQVLRRFAHFNAIQLSNPAPLFEL ILALKEENANSECENDDFNEKVAETSTKLLKLK
Sbjct: 510 MYQQVLRRFAHFNAIQLSNPAPLFELLILALKEENANSECENDDFNEKVAETSTKLLKLK 569

Query: 61  AEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           AEMLEEFFCIHIDRNGNL R+PVVLDQYTPDMDRVPEFMLSLAND
Sbjct: 570 AEMLEEFFCIHIDRNGNLARLPVVLDQYTPDMDRVPEFMLSLAND 614

[Close]

BLAST of Cla001013 vs. NCBI nr
Match: gi|700190674|gb|KGN45878.1| (hypothetical protein Csa_6G016960 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLK 60
           MYQQVLRRFAHFNAIQLSNPAPLFEL ILALKEENANSECENDDFNEKVAETSTKLLKLK
Sbjct: 392 MYQQVLRRFAHFNAIQLSNPAPLFELLILALKEENANSECENDDFNEKVAETSTKLLKLK 451

Query: 61  AEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           AEMLEEFFCIHIDRNGNL R+PVVLDQYTPDMDRVPEFMLSLAND
Sbjct: 452 AEMLEEFFCIHIDRNGNLARLPVVLDQYTPDMDRVPEFMLSLAND 496

[Close]

BLAST of Cla001013 vs. NCBI nr
Match: gi|659126219|ref|XP_008463072.1| (PREDICTED: DNA mismatch repair protein MLH1 isoform X1 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 5.2e-48
Identity = 99/105 (94.29%), Postives = 100/105 (95.24%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLK 60
           MYQQVLRRFAHFNAIQLSNPAPLFEL ILALKEE ANSECENDDFNEKVAETSTKLLKLK
Sbjct: 510 MYQQVLRRFAHFNAIQLSNPAPLFELLILALKEEYANSECENDDFNEKVAETSTKLLKLK 569

Query: 61  AEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           AEMLEEFFCI IDRNGNL  +PVVLDQYTPDMDRVPEFMLSLAND
Sbjct: 570 AEMLEEFFCISIDRNGNLASLPVVLDQYTPDMDRVPEFMLSLAND 614

[Close]

BLAST of Cla001013 vs. NCBI nr
Match: gi|659126221|ref|XP_008463073.1| (PREDICTED: DNA mismatch repair protein MLH1 isoform X2 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 5.2e-48
Identity = 99/105 (94.29%), Postives = 100/105 (95.24%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSECENDDFNEKVAETSTKLLKLK 60
           MYQQVLRRFAHFNAIQLSNPAPLFEL ILALKEE ANSECENDDFNEKVAETSTKLLKLK
Sbjct: 392 MYQQVLRRFAHFNAIQLSNPAPLFELLILALKEEYANSECENDDFNEKVAETSTKLLKLK 451

Query: 61  AEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           AEMLEEFFCI IDRNGNL  +PVVLDQYTPDMDRVPEFMLSLAND
Sbjct: 452 AEMLEEFFCISIDRNGNLASLPVVLDQYTPDMDRVPEFMLSLAND 496

[Close]

BLAST of Cla001013 vs. NCBI nr
Match: gi|700253266|gb|AIU48256.1| (MLH1, partial [Platanus x acerifolia])

HSP 1 Score: 162.9 bits (411), Expect = 3.1e-37
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1


Query: 1   MYQQVLRRFAHFNAIQLSNPAPLFELFILALKEENANSEC-ENDDFNEKVAETSTKLLKL 60
           MYQQVLRRFAHFNAIQLS+PAP+ EL ++ALKEE+ + EC ENDD  EK+AE +T+LLK 
Sbjct: 480 MYQQVLRRFAHFNAIQLSDPAPIPELIMMALKEEDLDPECNENDDLKEKIAEMNTELLKQ 539

Query: 61  KAEMLEEFFCIHIDRNGNLDRIPVVLDQYTPDMDRVPEFMLSLAND 106
           KAEMLEE+FCIHID+ GNL R+PV+LDQYTPDMD VPEF+L L ND
Sbjct: 540 KAEMLEEYFCIHIDQQGNLSRLPVILDQYTPDMDHVPEFVLCLGND 585

The following BLAST results are available for this feature:

BLAST of Cla001013 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MLH1_ARATH	1.1e-34	67.92	DNA mismatch repair protein MLH1 OS=Arabidopsis thaliana GN=MLH1 PE=2 SV=1	[more]
MLH1_MOUSE	2.0e-15	41.35	DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=1 SV=2	[more]
MLH1_HUMAN	3.4e-15	41.35	DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1	[more]
MLH1_RAT	8.3e-14	38.46	DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2 SV=1	[more]
MLH1_DICDI	2.7e-12	38.46	DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum GN=mlh1 PE=3 SV=1	[more]

BLAST of Cla001013 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8W6_CUCSA	7.8e-51	97.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016960 PE=4 SV=1	[more]
A0A097PJN1_PLAAC	2.2e-37	73.58	MLH1 (Fragment) OS=Platanus acerifolia PE=2 SV=1	[more]
A0A097PJI6_AQUCA	5.4e-36	71.70	MLH1 (Fragment) OS=Aquilegia coerulea PE=2 SV=1	[more]
A0A097PJL8_PRUPE	5.4e-36	70.75	MLH1 (Fragment) OS=Prunus persica PE=2 SV=1	[more]
M5XLJ4_PRUPE	5.4e-36	70.75	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002197mg PE=4 SV=1	[more]

BLAST of Cla001013 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709830\|ref\|XP_011656465.1\|	1.1e-50	97.14	PREDICTED: DNA mismatch repair protein MLH1 [Cucumis sativus]	[more]
gi\|700190674\|gb\|KGN45878.1\|	1.1e-50	97.14	hypothetical protein Csa_6G016960 [Cucumis sativus]	[more]
gi\|659126219\|ref\|XP_008463072.1\|	5.2e-48	94.29	PREDICTED: DNA mismatch repair protein MLH1 isoform X1 [Cucumis melo]	[more]
gi\|659126221\|ref\|XP_008463073.1\|	5.2e-48	94.29	PREDICTED: DNA mismatch repair protein MLH1 isoform X2 [Cucumis melo]	[more]
gi\|700253266\|gb\|AIU48256.1\|	3.1e-37	73.58	MLH1, partial [Platanus x acerifolia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0009555	pollen development
biological_process	GO:0048316	seed development
biological_process	GO:0009845	seed germination
biological_process	GO:0010154	fruit development
biological_process	GO:0009791	post-embryonic development
cellular_component	GO:0032300	mismatch repair complex
cellular_component	GO:0000790	nuclear chromatin
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001013	Cla001013.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 28..62 scor
None	No IPR available	PANTHER	PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	coord: 1..105 score: 5.3
None	No IPR available	PANTHER	PTHR10073:SF40	DNA MISMATCH REPAIR PROTEIN MLH1	coord: 1..105 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001013	MELO3C025010	Melon (DHL92) v3.5.1	mewmB312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001013	Melon (DHL92) v3.6.1	medwmB299
Cla001013	Cucumber (Chinese Long) v3	cucwmB501
Cla001013	Watermelon (97103) v2	wmwmbB108
Cla001013	Wax gourd	wgowmB306
Cla001013	Cucumber (Gy14) v1	cgywmB656
Cla001013	Wild cucumber (PI 183967)	cpiwmB490
Cla001013	Melon (DHL92) v3.5.1	mewmB305
Cla001013	Watermelon (Charleston Gray)	wcgwmB410
Cla001013	Cucumber (Chinese Long) v2	cuwmB475
Cla001013	Bottle gourd (USVL1VR-Ls)	lsiwmB470
Cla001013	Bottle gourd (USVL1VR-Ls)	lsiwmB478
Cla001013	Cucumber (Gy14) v2	cgybwmB446