ClCG11G015280 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G015280
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr11 : 28617248 .. 28617667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAGTAGAAGCGGAATCCAAAGACGAAGCAATGAGATCCAAAACCGCCGTTCGTTGTGCAAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCACCTCAAAGCCACTGTCGATCAACAAGCCAAGGTTCTCAATTACAATTTACGATCACTATCTGCCCTAGCTTGTGGATAGCGTTCTGGTTTATATGATTCGCGATTTTGAAAAATTAAAACGTCAATTACCTTTCAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGTTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGTGGTTTCATGGAATTTGTTCTTCAGCTCCTGATGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

mRNA sequence

ATGGCGAAAGTAGAAGCGGAATCCAAAGACGAAGCAATGAGATCCAAAACCGCCGTTCGTTGTGCAAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCACCTCAAAGCCACTGTCGATCAACAAGCCAAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGTTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGTGGTTTCATGGAATTTGTTCTTCAGCTCCTGATGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

Coding sequence (CDS)

ATGGCGAAAGTAGAAGCGGAATCCAAAGACGAAGCAATGAGATCCAAAACCGCCGTTCGTTGTGCAAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCACCTCAAAGCCACTGTCGATCAACAAGCCAAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGTTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGTGGTTTCATGGAATTTGTTCTTCAGCTCCTGATGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

Protein sequence

MAKVEAESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDLKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKFV

Homology

[Close]

BLAST of ClCG11G015280 vs. TrEMBL
Match: A0A0A0LJY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 1


Query: 1   MAKVEAESKDEAMR-SKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGD 60
           M  VEAE+K+EAMR SKTA+RCAKAAFLLSSLKSSQNR L+ATV +QAKEK+ML K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAF 102
           LKI+L RER+RNKRIKLCG MEFVLQLL+V+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]

BLAST of ClCG11G015280 vs. TrEMBL
Match: B9GUV6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09670g PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-23
Identity = 54/93 (58.06%), Postives = 74/93 (79.57%), Query Frame = 1


Query: 7   ESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDLKIELVR 66
           ESKD+ ++S+ AVRCAKAA LLS LKS  NRH   ++D Q +EKEM+ + +GDLK+EL R
Sbjct: 8   ESKDKPLKSQVAVRCAKAAILLSLLKSFPNRHFTTSIDDQREEKEMMMREIGDLKMELAR 67

Query: 67  ERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFV 100
           ERL++KRIKLCG ME +LQ++ V+S+S+F L +
Sbjct: 68  ERLKSKRIKLCGLMEVILQVMAVLSISTFLLVI 100

[Close]

BLAST of ClCG11G015280 vs. TrEMBL
Match: M5Y778_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022895mg PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20
Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 1


Query: 11  EAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQ-AKEKEMLRKAVGDLKIELVRERL 70
           EA+RS  A+RCAKAA LLSSLKS  NR L   +D     EKE+LR+ +GDLK+E+ RERL
Sbjct: 14  EALRSHAAIRCAKAALLLSSLKSPPNRSLDTAIDNDDILEKEILRREIGDLKMEVARERL 73

Query: 71  RNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFK 103
            NKRIKLCG +E +LQL+++++LS FF  +AF+
Sbjct: 74  LNKRIKLCGLLELLLQLVLLLALSIFFFMLAFE 106

[Close]

BLAST of ClCG11G015280 vs. TrEMBL
Match: B9RJJ7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1035170 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 51/95 (53.68%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 7   ESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDLKIELVR 66
           E  DEA RS+   RCAKAAFLL SLKSS NRH K +++ + +E +++ K +GDLK++L R
Sbjct: 2   EMTDEAARSEITRRCAKAAFLLHSLKSSPNRHSKTSINGEDEEMDLMVKQIGDLKMKLAR 61

Query: 67  ERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAF 102
           ER +NKRIKLCG ME +LQ++M++  S+  L +AF
Sbjct: 62  ERTKNKRIKLCGLMEVILQVMMLLCFSTLLLVLAF 96

[Close]

BLAST of ClCG11G015280 vs. TrEMBL
Match: A0A061FG14_THECC (Retrotransposon-derived protein PEG10, putative OS=Theobroma cacao GN=TCM_034908 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-20
Identity = 52/103 (50.49%), Postives = 79/103 (76.70%), Query Frame = 1


Query: 1   MAKVEAESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDL 60
           M  +EA+++DEA +   A+RCAKAA LLSSLKSS +R  +A  + + +EKE +R+ + +L
Sbjct: 1   MEGIEAKTRDEAPKLLMAIRCAKAALLLSSLKSSVSRVFEAANNDEDEEKEKMRREIENL 60

Query: 61  KIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKF 104
           ++ELV+ERL+ K+IKLCG ME +LQL++V+ +SSF + +AF F
Sbjct: 61  RVELVKERLKIKKIKLCGVMELILQLILVMLISSFHMTLAFDF 103

[Close]

BLAST of ClCG11G015280 vs. TAIR10
Match: AT1G78172.1 (AT1G78172.1 unknown protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-12
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 8  SKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQ--QAKEKEMLRKAVGDLKIELV 67
          SKDE  R  TA+RCA+A  LL SL SS+      T+D   + +EK   R+ + DL+ +L 
Sbjct: 3  SKDEFSRDLTAIRCARATMLLYSLASSR------TIDSAGEKQEKGETRREIEDLRRKLT 62

Query: 68 RERLRNKRIKLCGFMEFVLQLLMVISLSSFFL 98
            +++  RIKLCG ME +L + +V+ LS+FFL
Sbjct: 63 MVKIKMNRIKLCGLMELLLLVFLVLLLSTFFL 88

[Close]

BLAST of ClCG11G015280 vs. NCBI nr
Match: gi|659132134|ref|XP_008466036.1| (PREDICTED: uncharacterized protein LOC103503589 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 87/105 (82.86%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 1   MAKVEAESKDEAMR-SKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGD 60
           M  VEAESKDEAMR SKTA+RCAKAAFLLSSLKSSQNR L+AT  +QAKE++MLRK VGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFKFV 105
           LKI+L RERLRNKRIKLCG MEFVLQLL+VISLSS  LFVAFKFV
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

[Close]

BLAST of ClCG11G015280 vs. NCBI nr
Match: gi|778687783|ref|XP_011652624.1| (PREDICTED: uncharacterized protein LOC105435036 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 1


Query: 1   MAKVEAESKDEAMR-SKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGD 60
           M  VEAE+K+EAMR SKTA+RCAKAAFLLSSLKSSQNR L+ATV +QAKEK+ML K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELVRERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFVAF 102
           LKI+L RER+RNKRIKLCG MEFVLQLL+V+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]

BLAST of ClCG11G015280 vs. NCBI nr
Match: gi|224063227|ref|XP_002301051.1| (hypothetical protein POPTR_0002s09670g [Populus trichocarpa])

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 54/93 (58.06%), Postives = 74/93 (79.57%), Query Frame = 1


Query: 7   ESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDLKIELVR 66
           ESKD+ ++S+ AVRCAKAA LLS LKS  NRH   ++D Q +EKEM+ + +GDLK+EL R
Sbjct: 8   ESKDKPLKSQVAVRCAKAAILLSLLKSFPNRHFTTSIDDQREEKEMMMREIGDLKMELAR 67

Query: 67  ERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFV 100
           ERL++KRIKLCG ME +LQ++ V+S+S+F L +
Sbjct: 68  ERLKSKRIKLCGLMEVILQVMAVLSISTFLLVI 100

[Close]

BLAST of ClCG11G015280 vs. NCBI nr
Match: gi|743802016|ref|XP_011016400.1| (PREDICTED: uncharacterized protein LOC105119904 [Populus euphratica])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 52/93 (55.91%), Postives = 74/93 (79.57%), Query Frame = 1


Query: 7   ESKDEAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQAKEKEMLRKAVGDLKIELVR 66
           ESKD+ ++S+ A+RCAKAA LLS LKS  NRH   ++D Q ++KEM+ + +GDLK+EL R
Sbjct: 8   ESKDKPLKSQVAIRCAKAAILLSLLKSFPNRHFTTSIDDQREDKEMMMREIGDLKMELAR 67

Query: 67  ERLRNKRIKLCGFMEFVLQLLMVISLSSFFLFV 100
           ERL++KRIKLCG ME +LQ++ V+S+S+F L +
Sbjct: 68  ERLKSKRIKLCGLMEVILQVMAVLSISTFLLVI 100

[Close]

BLAST of ClCG11G015280 vs. NCBI nr
Match: gi|645225092|ref|XP_008219422.1| (PREDICTED: uncharacterized protein LOC103319640 [Prunus mume])

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-21
Identity = 54/93 (58.06%), Postives = 73/93 (78.49%), Query Frame = 1


Query: 11  EAMRSKTAVRCAKAAFLLSSLKSSQNRHLKATVDQQ-AKEKEMLRKAVGDLKIELVRERL 70
           EA+RS  A+RCAKAA LLSSLKS  NR L   +D     EKE+LR+ +GDLK+E+VRERL
Sbjct: 14  EALRSHAAIRCAKAALLLSSLKSPPNRSLNTAIDNDDILEKEILRREIGDLKMEVVRERL 73

Query: 71  RNKRIKLCGFMEFVLQLLMVISLSSFFLFVAFK 103
           +NKRIKLC  +E +LQL+++++LS+FF  +AF+
Sbjct: 74  QNKRIKLCSLLELLLQLVLLLALSTFFFMLAFE 106

The following BLAST results are available for this feature:

BLAST of ClCG11G015280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJY1_CUCSA	1.6e-34	79.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895820 PE=4 SV=1	[more]
B9GUV6_POPTR	2.9e-23	58.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09670g PE=4 SV=1	[more]
M5Y778_PRUPE	1.0e-20	58.06	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022895mg PE=4 SV=1	[more]
B9RJJ7_RICCO	2.3e-20	53.68	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1035170 PE=4 SV=1	[more]
A0A061FG14_THECC	3.0e-20	50.49	Retrotransposon-derived protein PEG10, putative OS=Theobroma cacao GN=TCM_034908...	[more]

BLAST of ClCG11G015280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78172.1	1.2e-12	43.48	unknown protein	[more]

BLAST of ClCG11G015280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132134\|ref\|XP_008466036.1\|	2.9e-37	82.86	PREDICTED: uncharacterized protein LOC103503589 [Cucumis melo]	[more]
gi\|778687783\|ref\|XP_011652624.1\|	2.3e-34	79.41	PREDICTED: uncharacterized protein LOC105435036 [Cucumis sativus]	[more]
gi\|224063227\|ref\|XP_002301051.1\|	4.1e-23	58.06	hypothetical protein POPTR_0002s09670g [Populus trichocarpa]	[more]
gi\|743802016\|ref\|XP_011016400.1\|	1.2e-22	55.91	PREDICTED: uncharacterized protein LOC105119904 [Populus euphratica]	[more]
gi\|645225092\|ref\|XP_008219422.1\|	3.9e-21	58.06	PREDICTED: uncharacterized protein LOC103319640 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G015280.1	ClCG11G015280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 36..56 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G015280	Csa3G895820	Cucumber (Chinese Long) v2	cuwcgB199
ClCG11G015280	MELO3C003451	Melon (DHL92) v3.5.1	mewcgB322
ClCG11G015280	Cla023125	Watermelon (97103) v1	wcgwmB103
ClCG11G015280	Cla97C11G221310	Watermelon (97103) v2	wcgwmbB064
ClCG11G015280	Bhi09G002192	Wax gourd	wcgwgoB179
ClCG11G015280	CSPI03G46250	Wild cucumber (PI 183967)	cpiwcgB201
ClCG11G015280	CmaCh01G014270	Cucurbita maxima (Rimu)	cmawcgB393
ClCG11G015280	CmoCh01G014750	Cucurbita moschata (Rifu)	cmowcgB391
ClCG11G015280	Lsi04G023430	Bottle gourd (USVL1VR-Ls)	lsiwcgB260
ClCG11G015280	Cp4.1LG02g03500	Cucurbita pepo (Zucchini)	cpewcgB488
ClCG11G015280	CsGy3G043720	Cucumber (Gy14) v2	cgybwcgB183
ClCG11G015280	MELO3C003451.2	Melon (DHL92) v3.6.1	medwcgB316
ClCG11G015280	Carg00372	Silver-seed gourd	carwcgB0647
ClCG11G015280	CsaV3_3G048700	Cucumber (Chinese Long) v3	cucwcgB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G015280	Cucumber (Gy14) v1	cgywcgB536
ClCG11G015280	Cucurbita maxima (Rimu)	cmawcgB014
ClCG11G015280	Cucurbita maxima (Rimu)	cmawcgB016
ClCG11G015280	Cucurbita moschata (Rifu)	cmowcgB007
ClCG11G015280	Cucurbita moschata (Rifu)	cmowcgB009
ClCG11G015280	Cucurbita pepo (Zucchini)	cpewcgB693
ClCG11G015280	Cucurbita pepo (Zucchini)	cpewcgB695
ClCG11G015280	Silver-seed gourd	carwcgB0162
ClCG11G015280	Silver-seed gourd	carwcgB0610