Carg00372 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00372
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mediator of RNA polymerase II transcription subunit like
Location	Cucurbita_argyrosperma_scaffold_001 : 2035518 .. 2035951 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGTTCTCGATGAAAATTTATGAACAGTAACTGTGCTTGTGATCGCGCACTGGTTTATTTGATTTGGATTAGTAATCAACATAAGCGATTTTGAGAAATTAAAATGTCTATTACCTTTCAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA

mRNA sequence

ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA

Coding sequence (CDS)

ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA

Protein sequence

MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDLKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI

Homology

[Close]

BLAST of Carg00372 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 3.5e-42
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKS QNRNLRASVDE+AKEKERLRKVVGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 105
           KIELAMERRRN+RIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI
Sbjct: 61  KIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]

BLAST of Carg00372 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           ME VEAESRDEAMRS+TAFRCAKAAF++SS KS QN  LRA+V E  KEKE+LRK +GDL
Sbjct: 1   MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKS 104
           K+ELA ER RN+RIKLCGLMEFVLQ+LLVI+LSSFF FIAFKS
Sbjct: 61  KVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFKS 103

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BLAST of Carg00372 vs. NCBI nr
Match: XP_011652624.1 (PREDICTED: uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical protein Csa_3G895820 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60
           ME VEAE+++EAMR SKTA RCAKAAFL+SS KS QNR LRA+V E+AKEK+ L K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAF 102
           LKI+LA ER RN+RIKLCGLMEFVLQLLLV+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]

BLAST of Carg00372 vs. NCBI nr
Match: XP_002301051.2 (uncharacterized protein LOC7495153 [Populus trichocarpa] >PNT48797.1 hypothetical protein POPTR_002G096200v3 [Populus trichocarpa])

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 52/100 (52.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1   MEGVE-AESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60
           MEG E  ES+D+ ++S+ A RCAKAA L+S  KS  NR+   S+D++ +EKE + + +GD
Sbjct: 58  MEGAEKMESKDKPLKSQVAVRCAKAAILLSLLKSFPNRHFTTSIDDQREEKEMMMREIGD 117

Query: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFI 100
           LK+ELA ER +++RIKLCGLME +LQ++ V+S+S+F L I
Sbjct: 118 LKMELARERLKSKRIKLCGLMEVILQVMAVLSISTFLLVI 157

[Close]

BLAST of Carg00372 vs. NCBI nr
Match: XP_011016400.1 (PREDICTED: uncharacterized protein LOC105119904 [Populus euphratica])

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 51/100 (51.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1   MEGVE-AESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60
           MEG E  ES+D+ ++S+ A RCAKAA L+S  KS  NR+   S+D++ ++KE + + +GD
Sbjct: 1   MEGAEKMESKDKPLKSQVAIRCAKAAILLSLLKSFPNRHFTTSIDDQREDKEMMMREIGD 60

Query: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFI 100
           LK+ELA ER +++RIKLCGLME +LQ++ V+S+S+F L I
Sbjct: 61  LKMELARERLKSKRIKLCGLMEVILQVMAVLSISTFLLVI 100

[Close]

BLAST of Carg00372 vs. TAIR10
Match: AT1G78172.1 (unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 8  SRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDLKIELAME 67
          S+DE  R  TA RCA+A  L+ S  S  +R + ++   E +EK   R+ + DL+ +L M 
Sbjct: 3  SKDEFSRDLTAIRCARATMLLYSLAS--SRTIDSA--GEKQEKGETRREIEDLRRKLTMV 62

Query: 68 RRRNRRIKLCGLMEFVLQLLLVISLSSFFL 98
          + +  RIKLCGLME +L +      S+FFL
Sbjct: 63 KIKMNRIKLCGLMELLLLVFXXXXXSTFFL 88

[Close]

BLAST of Carg00372 vs. TrEMBL
Match: tr|A0A0A0LJY1|A0A0A0LJY1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-28
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60
           ME VEAE+++EAMR SKTA RCAKAAFL+SS KS QNR LRA+V E+AKEK+ L K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAF 102
           LKI+LA ER RN+RIKLCGLMEFVLQLLLV+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]

BLAST of Carg00372 vs. TrEMBL
Match: tr|A0A2K2BG89|A0A2K2BG89_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G096200v3 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.7e-17
Identity = 52/100 (52.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1   MEGVE-AESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60
           MEG E  ES+D+ ++S+ A RCAKAA L+S  KS  NR+   S+D++ +EKE + + +GD
Sbjct: 58  MEGAEKMESKDKPLKSQVAVRCAKAAILLSLLKSFPNRHFTTSIDDQREEKEMMMREIGD 117

Query: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFI 100
           LK+ELA ER +++RIKLCGLME +LQ++ V+S+S+F L I
Sbjct: 118 LKMELARERLKSKRIKLCGLMEVILQVMAVLSISTFLLVI 157

[Close]

BLAST of Carg00372 vs. TrEMBL
Match: tr|M5Y778|M5Y778_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G516500 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-16
Identity = 56/107 (52.34%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MEGVEAESR---DEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVD-EEAKEKERLRKV 60
           MEG E +++    EA+RS  A RCAKAA L+SS KS  NR+L  ++D ++  EKE LR+ 
Sbjct: 1   MEGRETQTKGEGGEALRSHAAIRCAKAALLLSSLKSPPNRSLDTAIDNDDILEKEILRRE 60

Query: 61  VGDLKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKS 104
           +GDLK+E+A ER  N+RIKLCGL+E +LQL+L+++LS FF  +AF++
Sbjct: 61  IGDLKMEVARERLLNKRIKLCGLLELLLQLVLLLALSIFFFMLAFEN 107

[Close]

BLAST of Carg00372 vs. TrEMBL
Match: tr|A0A061FG14|A0A061FG14_THECC (Retrotransposon-derived protein PEG10, putative OS=Theobroma cacao OX=3641 GN=TCM_034908 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 50/101 (49.50%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           MEG+EA++RDEA +   A RCAKAA L+SS KS  +R   A+ ++E +EKE++R+ + +L
Sbjct: 1   MEGIEAKTRDEAPKLLMAIRCAKAALLLSSLKSSVSRVFEAANNDEDEEKEKMRREIENL 60

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAF 102
           ++EL  ER + ++IKLCG+ME +LQL+LV+ +SSF + +AF
Sbjct: 61  RVELVKERLKIKKIKLCGVMELILQLILVMLISSFHMTLAF 101

[Close]

BLAST of Carg00372 vs. TrEMBL
Match: tr|A0A2I4HFE6|A0A2I4HFE6_9ROSI (uncharacterized protein LOC109016994 OS=Juglans regia OX=51240 GN=LOC109016994 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.1e-15
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           MEGV+ E+++   RSK   RCAKAA L+S+ KS  NR+L        +E E LR+ +G+L
Sbjct: 29  MEGVDMEAKE---RSKVVIRCAKAALLLSAIKSFPNRSLNCEEYNRFEEDEMLRRKIGEL 88

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIA 101
           KI L  ER + +RIKLCGLME VLQ+ LV+SLS+FFL +A
Sbjct: 89  KIALVRERLKTKRIKLCGLMEVVLQIALVLSLSTFFLTLA 125

The following BLAST results are available for this feature:

BLAST of Carg00372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940284.1	3.5e-42	97.12	uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 unchar...	[more]
XP_022138206.1	2.8e-31	78.64	uncharacterized protein LOC111009432 [Momordica charantia]	[more]
XP_011652624.1	1.4e-27	76.47	PREDICTED: uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hy...	[more]
XP_002301051.2	1.5e-16	52.00	uncharacterized protein LOC7495153 [Populus trichocarpa] >PNT48797.1 hypothetica...	[more]
XP_011016400.1	2.5e-16	51.00	PREDICTED: uncharacterized protein LOC105119904 [Populus euphratica]	[more]

BLAST of Carg00372 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78172.1	2.9e-06	40.00	unknown protein	[more]

BLAST of Carg00372 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00372 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJY1\|A0A0A0LJY1_CUCSA	9.4e-28	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1	[more]
tr\|A0A2K2BG89\|A0A2K2BG89_POPTR	9.7e-17	52.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G096200v3 PE=...	[more]
tr\|M5Y778\|M5Y778_PRUPE	3.7e-16	52.34	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G516500 PE=4 SV=1	[more]
tr\|A0A061FG14\|A0A061FG14_THECC	2.4e-15	49.50	Retrotransposon-derived protein PEG10, putative OS=Theobroma cacao OX=3641 GN=TC...	[more]
tr\|A0A2I4HFE6\|A0A2I4HFE6_9ROSI	9.1e-15	53.00	uncharacterized protein LOC109016994 OS=Juglans regia OX=51240 GN=LOC109016994 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00372-RA	Carg00372-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00372	Cla023125	Watermelon (97103) v1	carwmB0672
Carg00372	Csa3G895820	Cucumber (Chinese Long) v2	carcuB0685
Carg00372	MELO3C003451	Melon (DHL92) v3.5.1	carmeB0666
Carg00372	ClCG11G015280	Watermelon (Charleston Gray)	carwcgB0647
Carg00372	CSPI03G46250	Wild cucumber (PI 183967)	carcpiB0697
Carg00372	Lsi04G023430	Bottle gourd (USVL1VR-Ls)	carlsiB609
Carg00372	Cp4.1LG02g03500	Cucurbita pepo (Zucchini)	carcpeB0943
Carg00372	CsGy3G043720	Cucumber (Gy14) v2	carcgybB0660
Carg00372	MELO3C003451.2	Melon (DHL92) v3.6.1	carmedB0678
Carg00372	CsaV3_3G048700	Cucumber (Chinese Long) v3	carcucB0699
Carg00372	Cla97C11G221310	Watermelon (97103) v2	carwmbB0692

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00372	Wax gourd	carwgoB0789
Carg00372	Silver-seed gourd	carcarB554
Carg00372	Cucumber (Gy14) v1	carcgyB0753
Carg00372	Cucurbita maxima (Rimu)	carcmaB0932
Carg00372	Cucurbita maxima (Rimu)	carcmaB0934
Carg00372	Cucurbita maxima (Rimu)	carcmaB0947
Carg00372	Cucurbita moschata (Rifu)	carcmoB0906
Carg00372	Cucurbita moschata (Rifu)	carcmoB0908
Carg00372	Cucurbita moschata (Rifu)	carcmoB0922
Carg00372	Cucurbita pepo (Zucchini)	carcpeB0949
Carg00372	Cucurbita pepo (Zucchini)	carcpeB0947