ClCG11G004550 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G004550
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionGlutelin type-A
LocationCG_Chr11 : 4921130 .. 4922491 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATCGATTTGACCCCTCAATTGCCTAAGAAGATCTATGGTAGTGATGGAGGTTCCTATTATTCTTGGTCTTCCAATGAGCTTCCCATGCTTCGTGAAGGAAACATCGGCGCCTCCAAGCTTACCTTGGAGAAGAATGGCTTTGCTCTCCCTTGCTACTCCGATTCCGCCAAGGTCGCTTATGTTCTTCAAGGTATTTTTTCAATGCGGTTTTAGTTTCGTGTGAATTTCAAATTTGTTTAGCGATTTTCAGTATGAATCTAATTGATGAGCAAAATATATCAGGTAATGGAGTGGCTAGAATCATTTTTCCGGAATCAGAGGAGAAGGTGATTGCAATCAAGAAAGGAGATGCGATTGCGCCCATTCGGTGTGGTGACATGGTGGTTCAACAAAGAAGCCACTGATTTGGTGGTTTTGTTTTTAGGCGATACATCAAAGGCTCACAAATTGGGTGAGTTCACTGACTTATTCCTAACGGGTACCAATGGAATCTTCACTGGTTTCTCTACGGAGTTCGTCAAGCGAGCCTGGGACATGGACGAGGAGTCAGTGATATCTTTGGTGAAAAACCAAATCGGAACCGGAATCGTGAAGTTGAAAGAAGGAACGAAGATGCCAGAGGTAAAAAAGGAGCACCGAAACGGAATGACGCTGAATTGCGAGGAGGCTTCACTGGATGTGGACGTTAAGAATGGAGGACGAGTTGTGGTTTTGAACACAAAGAACTTGCCATTGGTAGGGGAGGTAGGATTGGGAGCAGATCTTGTTCAATTAGACGGAAGTGCGATGTGCTCGCCTGGATTCTCATGTGATTCGGTGTTGCAGGTGACCTACATCATGAAAGGGAGTGGAAGAGTGGAGGTTGTAGGAGTGGACGGGAAGAAGGTTTTAAAAACCAGAGTGAAAGCTGGAAATTTGTTCATAGTACCAAGGTTCTTTGTGGTATCGAAGATTGGAGATCCCGAAGGAATGGAGTGGTTCTCCATTATCATCACTTCCAATCCTATTTTCACTCACTTGGCCGGTAGCATCGGCGTCTGGAAAGCTCTATCGCCAGAAGTACTCCAGGCAGCCTTCAATATTGACACTAATTTGGTTAATAACTTCTTCTAAGAGGTCTTCTGATGCCATCTTCTTCCCTCCTTCCAATTAGCTTCAATCATCCAATTACACTTTTTATTTTTCGCATTTAGAAAGTTTTCCCAAGTGGTTTATTCCCTTTAATTATAATTATAGTTTAGGAATTTCAAATAAAAAGGAGTTTCTTAATATCATTAGCACTTTCATATATCTAAACTAAGATTTTTTGTTTTTTCTTTTCTTTTTAATCATTCTTTGACATTTGCAGGGCTTTGA

mRNA sequence

ATGGATATCGATTTGACCCCTCAATTGCCTAAGAAGATCTATGGTAGTGATGGAGGTTCCTATTATTCTTGGTCTTCCAATGAGCTTCCCATGCTTCGTGAAGGAAACATCGGCGCCTCCAAGCTTACCTTGGAGAAGAATGGCTTTGCTCTCCCTTGCTACTCCGATTCCGCCAAGGTCGCTTATGTTCTTCAAGGGCTTTGA

Coding sequence (CDS)

ATGGATATCGATTTGACCCCTCAATTGCCTAAGAAGATCTATGGTAGTGATGGAGGTTCCTATTATTCTTGGTCTTCCAATGAGCTTCCCATGCTTCGTGAAGGAAACATCGGCGCCTCCAAGCTTACCTTGGAGAAGAATGGCTTTGCTCTCCCTTGCTACTCCGATTCCGCCAAGGTCGCTTATGTTCTTCAAGGGCTTTGA

Protein sequence

MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKVAYVLQGL
Homology
[Close]
BLAST of ClCG11G004550 vs. TrEMBL
Match: A0A0A0K666_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G281380 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-26
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M+IDLTPQLPKKIYGSDGGSYY+WS  ELPMLREGNIGASKL LEKNGFALP YSDSAKV
Sbjct: 1  MEIDLTPQLPKKIYGSDGGSYYAWSPKELPMLREGNIGASKLALEKNGFALPRYSDSAKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. TrEMBL
Match: A0A022R6L3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022588mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M++DLTPQL KK+YG DGG+YY+W  NELPMLREGNIGA KL LEKNGFALP YSDSAKV
Sbjct: 1  MELDLTPQLAKKLYGGDGGAYYAWCPNELPMLREGNIGAGKLALEKNGFALPRYSDSAKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. TrEMBL
Match: A0A022R1M0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a023102mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M++DLTPQL KK+YG DGG+YY+W  NELPMLREGNIGA KL LEKNGFALP YSDSAKV
Sbjct: 1  MELDLTPQLAKKLYGGDGGAYYAWCPNELPMLREGNIGAGKLALEKNGFALPRYSDSAKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. TrEMBL
Match: A0A022QLG5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008978mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M++DLTPQL KK+YG DGG+YY+W  NELPMLREGNIGA KL LEKNGFALP YSDSAKV
Sbjct: 1  MELDLTPQLAKKLYGGDGGAYYAWCPNELPMLREGNIGAGKLALEKNGFALPRYSDSAKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. TrEMBL
Match: A0A022R4H3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a023656mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M++DLTPQL KK+YG DGG+YY+W  NELPMLREGNIGA KL LEKNGFALP YSDSAKV
Sbjct: 1  MELDLTPQLAKKLYGGDGGAYYAWCPNELPMLREGNIGAGKLALEKNGFALPRYSDSAKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. TAIR10
Match: AT1G07750.1 (AT1G07750.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 6.7e-25
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M++DLTP+LPKK+YG DGGSY +W   ELPML++GNIGA+KL LEKNGFA+P YSDS+KV
Sbjct: 1  MELDLTPKLPKKVYGGDGGSYSAWCPEELPMLKQGNIGAAKLALEKNGFAVPRYSDSSKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. TAIR10
Match: AT2G28680.1 (AT2G28680.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-24
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M++DL+P+LPKK+YG DGGSY++W   ELPMLR+GNIGASKL LEK G ALP YSDS KV
Sbjct: 1  MELDLSPRLPKKVYGGDGGSYFAWCPEELPMLRDGNIGASKLALEKYGLALPRYSDSPKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. NCBI nr
Match: gi|449465356|ref|XP_004150394.1| (PREDICTED: glutelin type-B 5-like isoform X1 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-26
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M+IDLTPQLPKKIYGSDGGSYY+WS  ELPMLREGNIGASKL LEKNGFALP YSDSAKV
Sbjct: 1  MEIDLTPQLPKKIYGSDGGSYYAWSPKELPMLREGNIGASKLALEKNGFALPRYSDSAKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. NCBI nr
Match: gi|778726347|ref|XP_011659088.1| (PREDICTED: 11S globulin seed storage protein 2-like isoform X2 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-26
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M+IDLTPQLPKKIYGSDGGSYY+WS  ELPMLREGNIGASKL LEKNGFALP YSDSAKV
Sbjct: 1  MEIDLTPQLPKKIYGSDGGSYYAWSPKELPMLREGNIGASKLALEKNGFALPRYSDSAKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. NCBI nr
Match: gi|659123123|ref|XP_008461502.1| (PREDICTED: glutelin type-A 1-like [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 5.7e-26
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          M+IDLTPQLPKKIYG DGGSYYSWS  ELPMLREGNIGASKL LEKNGFALP YSDSAKV
Sbjct: 1  MEIDLTPQLPKKIYGGDGGSYYSWSPKELPMLREGNIGASKLALEKNGFALPRYSDSAKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. NCBI nr
Match: gi|1021561208|ref|XP_016171845.1| (PREDICTED: glutelin type-B 5-like [Arachis ipaensis])

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-24
Identity = 54/66 (81.82%), Postives = 63/66 (95.45%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          MD+DL+PQLPKK+YG +GGSYY+WSS+ELPMLR+GNIGA+KL LEKNGFALP YSDS+KV
Sbjct: 1  MDLDLSPQLPKKLYGGNGGSYYAWSSSELPMLRQGNIGAAKLALEKNGFALPRYSDSSKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

[Close]
BLAST of ClCG11G004550 vs. NCBI nr
Match: gi|1012220766|ref|XP_015935691.1| (PREDICTED: glutelin type-B 5-like [Arachis duranensis])

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-24
Identity = 54/66 (81.82%), Postives = 63/66 (95.45%), Query Frame = 1 

Query: 1  MDIDLTPQLPKKIYGSDGGSYYSWSSNELPMLREGNIGASKLTLEKNGFALPCYSDSAKV 60
          MD+DL+PQLPKK+YG +GGSYY+WSS+ELPMLR+GNIGA+KL LEKNGFALP YSDS+KV
Sbjct: 1  MDLDLSPQLPKKLYGGNGGSYYAWSSSELPMLRQGNIGAAKLALEKNGFALPRYSDSSKV 60

Query: 61 AYVLQG 67
          AYVLQG
Sbjct: 61 AYVLQG 66

The following BLAST results are available for this feature:
BLAST of ClCG11G004550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K666_CUCSA3.1e-2690.91Uncharacterized protein OS=Cucumis sativus GN=Csa_7G281380 PE=4 SV=1[more]
A0A022R6L3_ERYGU1.1e-2381.82Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022588mg PE=4 SV=1[more]
A0A022R1M0_ERYGU1.1e-2381.82Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a023102mg PE=4 SV=1[more]
A0A022QLG5_ERYGU1.1e-2381.82Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008978mg PE=4 SV=1[more]
A0A022R4H3_ERYGU1.1e-2381.82Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a023656mg PE=4 SV=1[more]
BLAST of ClCG11G004550 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07750.16.7e-2574.24 RmlC-like cupins superfamily protein[more]
AT2G28680.13.3e-2474.24 RmlC-like cupins superfamily protein[more]
BLAST of ClCG11G004550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465356|ref|XP_004150394.1|4.4e-2690.91PREDICTED: glutelin type-B 5-like isoform X1 [Cucumis sativus][more]
gi|778726347|ref|XP_011659088.1|4.4e-2690.91PREDICTED: 11S globulin seed storage protein 2-like isoform X2 [Cucumis sativus][more]
gi|659123123|ref|XP_008461502.1|5.7e-2690.91PREDICTED: glutelin type-A 1-like [Cucumis melo][more]
gi|1021561208|ref|XP_016171845.1|3.1e-2481.82PREDICTED: glutelin type-B 5-like [Arachis ipaensis][more]
gi|1012220766|ref|XP_015935691.1|3.1e-2481.82PREDICTED: glutelin type-B 5-like [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006045Cupin_1
IPR011051RmlC_Cupin_sf
IPR014710RmlC-like_jellyroll
Vocabulary: Molecular Function
TermDefinition
GO:0045735nutrient reservoir activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0045735 nutrient reservoir activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G004550.1ClCG11G004550.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006045Cupin 1PFAMPF00190Cupin_1coord: 9..66
score: 1.0
IPR011051RmlC-like cupin domainunknownSSF51182RmlC-like cupinscoord: 7..66
score: 3.42
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 4..66
score: 1.4
NoneNo IPR availablePANTHERPTHR31189FAMILY NOT NAMEDcoord: 1..66
score: 1.8
NoneNo IPR availablePANTHERPTHR31189:SF8CUPIN FAMILY PROTEINcoord: 1..66
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G004550Cla97C11G211310Watermelon (97103) v2wcgwmbB065
ClCG11G004550Bhi10G001639Wax gourdwcgwgoB167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G004550Wax gourdwcgwgoB151
ClCG11G004550Cucumber (Chinese Long) v2cuwcgB353
ClCG11G004550Melon (DHL92) v3.5.1mewcgB009
ClCG11G004550Watermelon (97103) v1wcgwmB107
ClCG11G004550Bottle gourd (USVL1VR-Ls)lsiwcgB039
ClCG11G004550Silver-seed gourdcarwcgB0254