ClCG11G001490 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G001490
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	ELF4-like protein
Location	CG_Chr11 : 1708214 .. 1709669 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATATGCTCTCTCTGCTTTTTATTTATTAATTTATTTATTTGGCCATCTCTCTCTCTCTCTGGATTTCTCAGAAATTACAAGAGGTGCTGTTCCGGAGATTCGATTAAATCGCCGATCTTTTTCCACTGCTCCTCGGGAATCAGACTCTTCTTCTTCTTCTTCTTCCTCTCCCCACAACATAATGTTCCAGATTTTCAAGGTACTTAATTTAATTTTTACTCATTTTTCTTTTATTTTCAAACATTCAAAATTTGTAATTATTACATAACAATCAAAGAAAAAGAAAAAAAAAGAAAAAAAAAAAAGATGACTTTTTCCCTGGCCTTTTCATTCTTTATGTGATTATATCTTCCTCCTCTCTGTGTTTTTGTTTTTAATTTTATTTAGTTTTACATTAAGATCTTCTCCTAAATAGTTATTGATGGGTTTTTTTATCCAAAAAAAAAATAATAATAATAAAAAATTAATTAATTTTGGTAGCTGCAGTCAATAAATTATCTTCCCTTTTTTAGTCCTTTACTATTCTGAAAAAGAATTTCAGATTGTTGTTTGATTTCTTATAGTTTTGTCCGAATTTGAATTAATATCGTACCCATTCAGATTGCTTAATTCTTTTATTCTTTTAAATTAATAGTTTATTTATATTTTCAGGAATTTTAAATATATTTATTAGACATATAATGGTGTTTTTGAGTGTTCGAAGATATTCTTCTTTGGAAGTCTGAGCTTTAGGTGGGTATAAAAAAGAAAAGTCGATCTGCTTTTTTCTTTCTACATCTAATTATCAAATAATAATAATAAAATCATCGTTTTTTTTTTTTTTTTTGGTTTGTTTACATTAATAATGTAATTTCTCCACTTTGAGATGGAGGTGATGATTTCTTCTACAGTTCTTGTCTCATATGATTATGTTTGAATTTAAATTATGGAAATTGGAAGTAATTATTTATTTAATTAATATTATTGGAAGCAGGATTATTATTATAATTGGAAGTGATAATATGGAAGGGGAGATGAGATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAAGAATTTCGTTAAAGTTGAGAATATTTTAGACCAAAACAGATTGCTGATTAATGAAATTAACCAAAATCACGAGTCCAAATTGCCGGATAATCTCACCAAAAACGTCGCTCTAATTCGCGAGCTCAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGATCTCTCCACTTCCTTCACTAAATCCGTCGACCCTTCCGCCTCCGATGGAGACTCCGCCGCCGTGCCTGGCCACAAGCGCCACCGTCCTCCGCCCTAGCCATATCTATTTTATATATATATATATATTTCCTCATTCTTTGCTTACAACAATAACTTTTAATTCCCACATTCTCATCTCTTTTCTATCTAATTCTAAACCAAAATTATGTTTTTTTTTTTTTTT

mRNA sequence

ATATATGCTCTCTCTGCTTTTTATTTATTAATTTATTTATTTGGCCATCTCTCTCTCTCTCTGGATTTCTCAGAAATTACAAGAGGTGCTGTTCCGGAGATTCGATTAAATCGCCGATCTTTTTCCACTGCTCCTCGGGAATCAGACTCTTCTTCTTCTTCTTCTTCCTCTCCCCACAACATAATGTTCCAGATTTTCAAGGATTATTATTATAATTGGAAGTGATAATATGGAAGGGGAGATGAGATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAAGAATTTCGTTAAAGTTGAGAATATTTTAGACCAAAACAGATTGCTGATTAATGAAATTAACCAAAATCACGAGTCCAAATTGCCGGATAATCTCACCAAAAACGTCGCTCTAATTCGCGAGCTCAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGATCTCTCCACTTCCTTCACTAAATCCGTCGACCCTTCCGCCTCCGATGGAGACTCCGCCGCCGTGCCTGGCCACAAGCGCCACCGTCCTCCGCCCTAGCCATATCTATTTTATATATATATATATATTTCCTCATTCTTTGCTTACAACAATAACTTTTAATTCCCACATTCTCATCTCTTTTCTATCTAATTCTAAACCAAAATTATGTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGAAGGGGAGATGAGATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAAGAATTTCGTTAAAGTTGAGAATATTTTAGACCAAAACAGATTGCTGATTAATGAAATTAACCAAAATCACGAGTCCAAATTGCCGGATAATCTCACCAAAAACGTCGCTCTAATTCGCGAGCTCAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGATCTCTCCACTTCCTTCACTAAATCCGTCGACCCTTCCGCCTCCGATGGAGACTCCGCCGCCGTGCCTGGCCACAAGCGCCACCGTCCTCCGCCCTAG

Protein sequence

MEGEMRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPGHKRHRPPP

Homology

[Close]

BLAST of ClCG11G001490 vs. Swiss-Prot
Match: EF4L3_ARATH (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-30
Identity = 67/109 (61.47%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 1   MEGEM---RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKN 60
           MEG+     +  G +MDGK+++TF+K+FV+V+NILD NRLLINEINQNHESK+PDNL +N
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61  VALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPGHKRHRP 107
           V LIRELNNN+RRV  LY DLS +F+KS++ S S+GDS+   G++R RP
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEAS-SEGDSSEGRGNRRIRP 108

[Close]

BLAST of ClCG11G001490 vs. Swiss-Prot
Match: EF4L4_ARATH (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-27
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 1


Query: 1  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
          MEG++    G    MDGK++++FQK+FV V++ILDQNRLLINEINQNHESK PDNL +NV
Sbjct: 1  MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61 ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA 97
           LI+ELNNNIRRV  LY DLS SF +SVD S S+G+S+
Sbjct: 61 GLIKELNNNIRRVASLYGDLSHSFARSVDAS-SEGESS 97

[Close]

BLAST of ClCG11G001490 vs. Swiss-Prot
Match: EF4L2_ARATH (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-25
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1   MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG++    G   +MDGK+++ FQK+FV+V++ILDQNRLLINEINQNHESK  D+L +NV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS 96
            LIRELNNNIR V  LY DLS SF +SVD S S+G+S
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDAS-SEGES 100

[Close]

BLAST of ClCG11G001490 vs. Swiss-Prot
Match: ELF4_ARATH (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 14  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVD 73
           D  M E   +NF +V+++LD+NR LI ++N NH+S++ DN++KNVALI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 74  LYADLSTSFTKSVDPSASDGDSAAVPG 101
           +Y+DL+TSF+       +  D     G
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGGGAAG 108

[Close]

BLAST of ClCG11G001490 vs. Swiss-Prot
Match: EF4L1_ARATH (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.1e-14
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 14  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVD 73
           D ++ +T    F + +  LDQNR LI  +N+NH S++PDN+++NV LI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 74  LYADLSTSFTKSVDP---SASDGDS 96
           +Y+DLS +F K  D    +  DGD+
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDGDT 118

[Close]

BLAST of ClCG11G001490 vs. TrEMBL
Match: B9MSX7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14610g PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.9e-34
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1


Query: 1   MEGEM--RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG+    L  G ++DGK+++TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL++NV
Sbjct: 1   MEGDTFSGLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAV------PGHKRHRP 107
            LIRELNNNIRRVVDLYADLSTSFTKS+D S S+GDS+         GHKR+RP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSMDAS-SEGDSSGALKSDGKGGHKRNRP 113

[Close]

BLAST of ClCG11G001490 vs. TrEMBL
Match: M0T649_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-34
Identity = 76/108 (70.37%), Postives = 93/108 (86.11%), Query Frame = 1


Query: 1   MEGEM--RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG+    L  G ++DGK+++TFQK+F++VENILDQNR LINEINQNHESK+PDNL++NV
Sbjct: 1   MEGDRFSGLGNGTQVDGKVLQTFQKSFLQVENILDQNRQLINEINQNHESKIPDNLSRNV 60

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPGHKRHRP 107
            LIRELNNNIRRVVDLYADLS SFT+S++ S S+GDS   PGHKR+RP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSLSFTRSMEAS-SEGDSEGKPGHKRNRP 107

[Close]

BLAST of ClCG11G001490 vs. TrEMBL
Match: A0A0D2QJ77_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G014800 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-34
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 7   LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNN 66
           L  G E+D K+V+TFQKNFV+V+NILDQNRLLINEINQNHE+K+PDNLT+NV LIRELNN
Sbjct: 9   LGNGGEIDTKVVQTFQKNFVQVQNILDQNRLLINEINQNHETKIPDNLTRNVGLIRELNN 68

Query: 67  NIRRVVDLYADLSTSFTKSVDPSASDGDSAAV---PGHKRHRP 107
           NIRRVVDLYADLSTS+ KS+D S+SDGDS       G+KR+RP
Sbjct: 69  NIRRVVDLYADLSTSYNKSMDASSSDGDSNGAMKSGGNKRNRP 111

[Close]

BLAST of ClCG11G001490 vs. TrEMBL
Match: F6HGP9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01370 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-34
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1


Query: 1   MEGEM--RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG+    L  G ++DGK+++TFQK+FV+V+NILDQNRLLINEINQNHESK+PDNL++NV
Sbjct: 36  MEGDTFSGLGNGTQIDGKVLQTFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 95

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAV------PGHKRHRP 107
            LIRELNNNIRRVVDLYADLSTSFTKSVD S S+GDS+         GHKR+RP
Sbjct: 96  GLIRELNNNIRRVVDLYADLSTSFTKSVDGS-SEGDSSGALRSDGKAGHKRNRP 148

[Close]

BLAST of ClCG11G001490 vs. TrEMBL
Match: C6ZKZ3_ANTMA (ELF4-like protein OS=Antirrhinum majus PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 75/108 (69.44%), Postives = 87/108 (80.56%), Query Frame = 1


Query: 1   MEGEM--RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG+    L  G  +DGK+  TFQK+FV+V+NILDQNRLLIN+INQNHESK+PDNL +NV
Sbjct: 1   MEGDTFSSLVNGNHVDGKIAHTFQKSFVQVQNILDQNRLLINQINQNHESKVPDNLNRNV 60

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPGHKRHRP 107
            LIRELNNNIRRVVDLYADLST+FTKS+D S+    S    GHKRHRP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTNFTKSMDGSSEGDSSGGKAGHKRHRP 108

[Close]

BLAST of ClCG11G001490 vs. TAIR10
Match: AT2G06255.1 (AT2G06255.1 ELF4-like 3)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-31
Identity = 67/109 (61.47%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 1   MEGEM---RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKN 60
           MEG+     +  G +MDGK+++TF+K+FV+V+NILD NRLLINEINQNHESK+PDNL +N
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61  VALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPGHKRHRP 107
           V LIRELNNN+RRV  LY DLS +F+KS++ S S+GDS+   G++R RP
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEAS-SEGDSSEGRGNRRIRP 108

[Close]

BLAST of ClCG11G001490 vs. TAIR10
Match: AT1G17455.1 (AT1G17455.1 ELF4-like 4)

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-28
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 1


Query: 1  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
          MEG++    G    MDGK++++FQK+FV V++ILDQNRLLINEINQNHESK PDNL +NV
Sbjct: 1  MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61 ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA 97
           LI+ELNNNIRRV  LY DLS SF +SVD S S+G+S+
Sbjct: 61 GLIKELNNNIRRVASLYGDLSHSFARSVDAS-SEGESS 97

[Close]

BLAST of ClCG11G001490 vs. TAIR10
Match: AT1G72630.1 (AT1G72630.1 ELF4-like 2)

HSP 1 Score: 116.7 bits (291), Expect = 8.9e-27
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1   MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG++    G   +MDGK+++ FQK+FV+V++ILDQNRLLINEINQNHESK  D+L +NV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS 96
            LIRELNNNIR V  LY DLS SF +SVD S S+G+S
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDAS-SEGES 100

[Close]

BLAST of ClCG11G001490 vs. TAIR10
Match: AT2G40080.1 (AT2G40080.1 Protein of unknown function (DUF1313))

HSP 1 Score: 86.7 bits (213), Expect = 9.8e-18
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 14  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVD 73
           D  M E   +NF +V+++LD+NR LI ++N NH+S++ DN++KNVALI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 74  LYADLSTSFTKSVDPSASDGDSAAVPG 101
           +Y+DL+TSF+       +  D     G
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGGGAAG 108

[Close]

BLAST of ClCG11G001490 vs. TAIR10
Match: AT2G29950.1 (AT2G29950.1 ELF4-like 1)

HSP 1 Score: 77.8 bits (190), Expect = 4.6e-15
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 14  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVD 73
           D ++ +T    F + +  LDQNR LI  +N+NH S++PDN+++NV LI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 74  LYADLSTSFTKSVDP---SASDGDS 96
           +Y+DLS +F K  D    +  DGD+
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDGDT 118

[Close]

BLAST of ClCG11G001490 vs. NCBI nr
Match: gi|747092105|ref|XP_011093804.1| (PREDICTED: protein ELF4-LIKE 3 [Sesamum indicum])

HSP 1 Score: 152.9 bits (385), Expect = 3.2e-34
Identity = 80/112 (71.43%), Postives = 95/112 (84.82%), Query Frame = 1


Query: 1   MEGEM--RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG+    L  G +MDGK++++FQK+FV+V+NILDQNRLLINEINQNHESK+PDNL++NV
Sbjct: 1   MEGDTFSGLGNGTQMDGKVLQSFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA----AVPGHKRHRP 107
            LIRELNNNIRRVVDLYADLSTSFTKS+D S S+GDS+       GHKRHRP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSMDAS-SEGDSSGGAYGKAGHKRHRP 111

[Close]

BLAST of ClCG11G001490 vs. NCBI nr
Match: gi|566176437|ref|XP_006381644.1| (hypothetical protein POPTR_0006s14610g [Populus trichocarpa])

HSP 1 Score: 151.8 bits (382), Expect = 7.1e-34
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1


Query: 1   MEGEM--RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG+    L  G ++DGK+++TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL++NV
Sbjct: 1   MEGDTFSGLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAV------PGHKRHRP 107
            LIRELNNNIRRVVDLYADLSTSFTKS+D S S+GDS+         GHKR+RP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSMDAS-SEGDSSGALKSDGKGGHKRNRP 113

[Close]

BLAST of ClCG11G001490 vs. NCBI nr
Match: gi|695033341|ref|XP_009404159.1| (PREDICTED: protein ELF4-LIKE 3-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 76/108 (70.37%), Postives = 93/108 (86.11%), Query Frame = 1


Query: 1   MEGEM--RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG+    L  G ++DGK+++TFQK+F++VENILDQNR LINEINQNHESK+PDNL++NV
Sbjct: 2   MEGDRFSGLGNGTQVDGKVLQTFQKSFLQVENILDQNRQLINEINQNHESKIPDNLSRNV 61

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAVPGHKRHRP 107
            LIRELNNNIRRVVDLYADLS SFT+S++ S S+GDS   PGHKR+RP
Sbjct: 62  GLIRELNNNIRRVVDLYADLSLSFTRSMEAS-SEGDSEGKPGHKRNRP 108

[Close]

BLAST of ClCG11G001490 vs. NCBI nr
Match: gi|225444780|ref|XP_002279914.1| (PREDICTED: protein ELF4-LIKE 4 [Vitis vinifera])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1


Query: 1   MEGEM--RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNV 60
           MEG+    L  G ++DGK+++TFQK+FV+V+NILDQNRLLINEINQNHESK+PDNL++NV
Sbjct: 1   MEGDTFSGLGNGTQIDGKVLQTFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 61  ALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAV------PGHKRHRP 107
            LIRELNNNIRRVVDLYADLSTSFTKSVD S S+GDS+         GHKR+RP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSVDGS-SEGDSSGALRSDGKAGHKRNRP 113

[Close]

BLAST of ClCG11G001490 vs. NCBI nr
Match: gi|823120372|ref|XP_012480129.1| (PREDICTED: protein ELF4-LIKE 3 [Gossypium raimondii])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 7   LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNN 66
           L  G E+D K+V+TFQKNFV+V+NILDQNRLLINEINQNHE+K+PDNLT+NV LIRELNN
Sbjct: 9   LGNGGEIDTKVVQTFQKNFVQVQNILDQNRLLINEINQNHETKIPDNLTRNVGLIRELNN 68

Query: 67  NIRRVVDLYADLSTSFTKSVDPSASDGDSAAV---PGHKRHRP 107
           NIRRVVDLYADLSTS+ KS+D S+SDGDS       G+KR+RP
Sbjct: 69  NIRRVVDLYADLSTSYNKSMDASSSDGDSNGAMKSGGNKRNRP 111

The following BLAST results are available for this feature:

BLAST of ClCG11G001490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EF4L3_ARATH	2.1e-30	61.47	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1	[more]
EF4L4_ARATH	3.8e-27	65.31	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1	[more]
EF4L2_ARATH	1.6e-25	63.92	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1	[more]
ELF4_ARATH	1.7e-16	44.83	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1	[more]
EF4L1_ARATH	8.1e-14	42.35	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1	[more]

BLAST of ClCG11G001490 vs. TrEMBL


Match Name	E-value	Identity	Description
B9MSX7_POPTR	4.9e-34	70.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14610g PE=4 SV=1	[more]
M0T649_MUSAM	8.4e-34	70.37	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0D2QJ77_GOSRA	8.4e-34	73.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G014800 PE=4 SV=1	[more]
F6HGP9_VITVI	8.4e-34	70.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01370 PE=4 SV=...	[more]
C6ZKZ3_ANTMA	1.1e-33	69.44	ELF4-like protein OS=Antirrhinum majus PE=2 SV=1	[more]

BLAST of ClCG11G001490 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G06255.1	1.2e-31	61.47	ELF4-like 3	[more]
AT1G17455.1	2.1e-28	65.31	ELF4-like 4	[more]
AT1G72630.1	8.9e-27	63.92	ELF4-like 2	[more]
AT2G40080.1	9.8e-18	44.83	Protein of unknown function (DUF1313)	[more]
AT2G29950.1	4.6e-15	42.35	ELF4-like 1	[more]

BLAST of ClCG11G001490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|747092105\|ref\|XP_011093804.1\|	3.2e-34	71.43	PREDICTED: protein ELF4-LIKE 3 [Sesamum indicum]	[more]
gi\|566176437\|ref\|XP_006381644.1\|	7.1e-34	70.18	hypothetical protein POPTR_0006s14610g [Populus trichocarpa]	[more]
gi\|695033341\|ref\|XP_009404159.1\|	1.2e-33	70.37	PREDICTED: protein ELF4-LIKE 3-like [Musa acuminata subsp. malaccensis]	[more]
gi\|225444780\|ref\|XP_002279914.1\|	1.2e-33	70.18	PREDICTED: protein ELF4-LIKE 4 [Vitis vinifera]	[more]
gi\|823120372\|ref\|XP_012480129.1\|	1.2e-33	73.79	PREDICTED: protein ELF4-LIKE 3 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009741	EARLY_FLOWERING_4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042753	positive regulation of circadian rhythm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G001490.1	ClCG11G001490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein of unknown function DUF1313	PFAM	PF07011	DUF1313	coord: 13..91 score: 1.4
None	No IPR available	PANTHER	PTHR33469	FAMILY NOT NAMED	coord: 1..95 score: 1.5
None	No IPR available	PANTHER	PTHR33469:SF3	PROTEIN ELF4-LIKE 2-RELATED	coord: 1..95 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G001490	Csa1G595850	Cucumber (Chinese Long) v2	cuwcgB008
ClCG11G001490	Csa2G000210	Cucumber (Chinese Long) v2	cuwcgB096
ClCG11G001490	MELO3C004647	Melon (DHL92) v3.5.1	mewcgB372
ClCG11G001490	MELO3C015510	Melon (DHL92) v3.5.1	mewcgB233
ClCG11G001490	Cla011173	Watermelon (97103) v1	wcgwmB091
ClCG11G001490	Cla016856	Watermelon (97103) v1	wcgwmB107
ClCG11G001490	Cla97C11G207870	Watermelon (97103) v2	wcgwmbB065
ClCG11G001490	Cla97C03G065460	Watermelon (97103) v2	wcgwmbB069
ClCG11G001490	Bhi06G001381	Wax gourd	wcgwgoB153
ClCG11G001490	Bhi02G001526	Wax gourd	wcgwgoB187
ClCG11G001490	CSPI01G28550	Wild cucumber (PI 183967)	cpiwcgB013
ClCG11G001490	CSPI02G00210	Wild cucumber (PI 183967)	cpiwcgB102
ClCG11G001490	Cucsa.117270	Cucumber (Gy14) v1	cgywcgB171
ClCG11G001490	CmaCh05G014160	Cucurbita maxima (Rimu)	cmawcgB689
ClCG11G001490	CmaCh10G007540	Cucurbita maxima (Rimu)	cmawcgB047
ClCG11G001490	CmaCh11G007220	Cucurbita maxima (Rimu)	cmawcgB093
ClCG11G001490	CmoCh11G007360	Cucurbita moschata (Rifu)	cmowcgB084
ClCG11G001490	CmoCh10G007830	Cucurbita moschata (Rifu)	cmowcgB039
ClCG11G001490	Lsi11G001630	Bottle gourd (USVL1VR-Ls)	lsiwcgB078
ClCG11G001490	Lsi06G003150	Bottle gourd (USVL1VR-Ls)	lsiwcgB355
ClCG11G001490	Cp4.1LG04g11030	Cucurbita pepo (Zucchini)	cpewcgB586
ClCG11G001490	Cp4.1LG18g03260	Cucurbita pepo (Zucchini)	cpewcgB315
ClCG11G001490	Cp4.1LG11g11970	Cucurbita pepo (Zucchini)	cpewcgB097
ClCG11G001490	CsGy1G027680	Cucumber (Gy14) v2	cgybwcgB008
ClCG11G001490	MELO3C015510.2	Melon (DHL92) v3.6.1	medwcgB225
ClCG11G001490	MELO3C004647.2	Melon (DHL92) v3.6.1	medwcgB367
ClCG11G001490	Carg12969	Silver-seed gourd	carwcgB0093
ClCG11G001490	Carg21936	Silver-seed gourd	carwcgB0862
ClCG11G001490	Carg10784	Silver-seed gourd	carwcgB0553
ClCG11G001490	CsaV3_1G040820	Cucumber (Chinese Long) v3	cucwcgB010
ClCG11G001490	CsaV3_2G001220	Cucumber (Chinese Long) v3	cucwcgB112

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG11G001490	ClCG03G015230	Watermelon (Charleston Gray)	wcgwcgB064

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G001490	Wax gourd	wcgwgoB143
ClCG11G001490	Watermelon (Charleston Gray)	wcgwcgB010
ClCG11G001490	Cucurbita maxima (Rimu)	cmawcgB144
ClCG11G001490	Cucurbita maxima (Rimu)	cmawcgB315
ClCG11G001490	Cucurbita moschata (Rifu)	cmowcgB128
ClCG11G001490	Cucurbita moschata (Rifu)	cmowcgB695
ClCG11G001490	Wild cucumber (PI 183967)	cpiwcgB562
ClCG11G001490	Cucurbita pepo (Zucchini)	cpewcgB135
ClCG11G001490	Cucurbita pepo (Zucchini)	cpewcgB494
ClCG11G001490	Cucurbita pepo (Zucchini)	cpewcgB720
ClCG11G001490	Cucumber (Gy14) v2	cgybwcgB094
ClCG11G001490	Cucumber (Gy14) v2	cgybwcgB494
ClCG11G001490	Melon (DHL92) v3.6.1	medwcgB187
ClCG11G001490	Silver-seed gourd	carwcgB0869