ClCG10G010770 (gene) Watermelon (Charleston Gray)

Overview
NameClCG10G010770
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr10 : 23925486 .. 23925674 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCCTCAACATGTTTGTAGTGATGAGAGTAGTGAGTCAAATAGAACAATTGGACAGAAACTTGTTCAAGCTTATCAGAATGTGAAGGTTGCCCTGGAAAAAAATCGAGGCGTTGGAACGAGACAAAACCAAAAGGAAGATCCTATTAGAACTATAATGTTCTTGAGATCGTGGAGTCACACTTGA

mRNA sequence

ATGAAGCCTCAACATGTTTGTAGTGATGAGAGTAGTGAGTCAAATAGAACAATTGGACAGAAACTTGTTCAAGCTTATCAGAATGTGAAGGTTGCCCTGGAAAAAAATCGAGGCGTTGGAACGAGACAAAACCAAAAGGAAGATCCTATTAGAACTATAATGTTCTTGAGATCGTGGAGTCACACTTGA

Coding sequence (CDS)

ATGAAGCCTCAACATGTTTGTAGTGATGAGAGTAGTGAGTCAAATAGAACAATTGGACAGAAACTTGTTCAAGCTTATCAGAATGTGAAGGTTGCCCTGGAAAAAAATCGAGGCGTTGGAACGAGACAAAACCAAAAGGAAGATCCTATTAGAACTATAATGTTCTTGAGATCGTGGAGTCACACTTGA

Protein sequence

MKPQHVCSDESSESNRTIGQKLVQAYQNVKVALEKNRGVGTRQNQKEDPIRTIMFLRSWSHT
Homology
[Close]
BLAST of ClCG10G010770 vs. TrEMBL
Match: A0A0A0KY58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001535 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-15
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1 

Query: 1  MKPQHVCSDESSESNRTIGQKLVQAYQNVKVALEKNRGVGTRQNQKEDPIRTIMFLRSWS 60
          MK QH  S +SS  +RT+G+KL QAY++VKVAL KN+GVGTR+NQ+EDPIRTIMFL SWS
Sbjct: 1  MKVQHEKSSDSS--SRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWS 60

Query: 61 HT 63
          HT
Sbjct: 61 HT 60

[Close]
BLAST of ClCG10G010770 vs. NCBI nr
Match: gi|700197628|gb|KGN52786.1| (hypothetical protein Csa_4G001535 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-15
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1 

Query: 1  MKPQHVCSDESSESNRTIGQKLVQAYQNVKVALEKNRGVGTRQNQKEDPIRTIMFLRSWS 60
          MK QH  S +SS  +RT+G+KL QAY++VKVAL KN+GVGTR+NQ+EDPIRTIMFL SWS
Sbjct: 1  MKVQHEKSSDSS--SRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWS 60

Query: 61 HT 63
          HT
Sbjct: 61 HT 60

The following BLAST results are available for this feature:
BLAST of ClCG10G010770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY58_CUCSA2.2e-1570.97Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001535 PE=4 SV=1[more]
BLAST of ClCG10G010770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197628|gb|KGN52786.1|3.2e-1570.97hypothetical protein Csa_4G001535 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G010770.1ClCG10G010770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG10G010770MELO3C017980Melon (DHL92) v3.5.1mewcgB449
ClCG10G010770Cla97C10G193670Watermelon (97103) v2wcgwmbB038
ClCG10G010770Bhi11G000979Wax gourdwcgwgoB102
ClCG10G010770CSPI04G00600Wild cucumber (PI 183967)cpiwcgB287
ClCG10G010770Cucsa.097330Cucumber (Gy14) v1cgywcgB112
ClCG10G010770MELO3C032638.2Melon (DHL92) v3.6.1medwcgB443
ClCG10G010770CsaV3_4G000550Cucumber (Chinese Long) v3cucwcgB285
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG10G010770Cucumber (Gy14) v1cgywcgB113
ClCG10G010770Cucumber (Gy14) v1cgywcgB381
ClCG10G010770Cucurbita maxima (Rimu)cmawcgB221
ClCG10G010770Cucurbita maxima (Rimu)cmawcgB225
ClCG10G010770Cucurbita maxima (Rimu)cmawcgB314
ClCG10G010770Cucurbita maxima (Rimu)cmawcgB386
ClCG10G010770Cucurbita maxima (Rimu)cmawcgB387
ClCG10G010770Cucurbita moschata (Rifu)cmowcgB206
ClCG10G010770Cucurbita moschata (Rifu)cmowcgB209
ClCG10G010770Cucurbita moschata (Rifu)cmowcgB309
ClCG10G010770Cucurbita moschata (Rifu)cmowcgB384
ClCG10G010770Cucurbita moschata (Rifu)cmowcgB385
ClCG10G010770Wild cucumber (PI 183967)cpiwcgB280
ClCG10G010770Wild cucumber (PI 183967)cpiwcgB560
ClCG10G010770Cucumber (Chinese Long) v2cuwcgB271
ClCG10G010770Cucumber (Chinese Long) v2cuwcgB278
ClCG10G010770Cucumber (Chinese Long) v2cuwcgB531
ClCG10G010770Melon (DHL92) v3.5.1mewcgB453
ClCG10G010770Watermelon (97103) v1wcgwmB051
ClCG10G010770Watermelon (97103) v1wcgwmB061
ClCG10G010770Cucurbita pepo (Zucchini)cpewcgB134
ClCG10G010770Cucurbita pepo (Zucchini)cpewcgB486
ClCG10G010770Cucurbita pepo (Zucchini)cpewcgB544
ClCG10G010770Cucurbita pepo (Zucchini)cpewcgB549
ClCG10G010770Bottle gourd (USVL1VR-Ls)lsiwcgB162
ClCG10G010770Bottle gourd (USVL1VR-Ls)lsiwcgB219
ClCG10G010770Bottle gourd (USVL1VR-Ls)lsiwcgB221
ClCG10G010770Cucumber (Gy14) v2cgybwcgB251
ClCG10G010770Cucumber (Gy14) v2cgybwcgB257
ClCG10G010770Cucumber (Gy14) v2cgybwcgB492
ClCG10G010770Melon (DHL92) v3.6.1medwcgB446
ClCG10G010770Silver-seed gourdcarwcgB0110
ClCG10G010770Silver-seed gourdcarwcgB0737
ClCG10G010770Silver-seed gourdcarwcgB0738
ClCG10G010770Silver-seed gourdcarwcgB0792
ClCG10G010770Cucumber (Chinese Long) v3cucwcgB279
ClCG10G010770Cucumber (Chinese Long) v3cucwcgB555
ClCG10G010770Watermelon (97103) v2wcgwmbB040
ClCG10G010770Wax gourdwcgwgoB078