ClCG10G004060 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G004060
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Serine-rich family protein
Location	CG_Chr10 : 5139627 .. 5139932 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAATCAGAGCAGAGCCGAAACAAACGAAGACGAATTGCAAGACACCGACCTCGAAATCCGCGGTGGCGGAATCGGAACTCGACGATCTGAAGAAGACTGCGCATATGCTAATGTCTCCGACGGCGTTGTCGAGGATGACGAAGTCGCCGAGCGTTAAATTGAATTGCCTCTGTTCTCCGACCACTCACATTGGATCTTTCCGGTGCCGACGCCACCGGAGCGCCGCTATCTCCCGCGGCGGTTCCGTCGGCTCCAATCTCTCCGATCTGGCTCAGAAATCAGGGGCGATGGACGATTAA

mRNA sequence

ATGGATTCAATCAGAGCAGAGCCGAAACAAACGAAGACGAATTGCAAGACACCGACCTCGAAATCCGCGGTGGCGGAATCGGAACTCGACGATCTGAAGAAGACTGCGCATATGCTAATGTCTCCGACGGCGTTGTCGAGGATGACGAAGTCGCCGAGCGTTAAATTGAATTGCCTCTGTTCTCCGACCACTCACATTGGATCTTTCCGGTGCCGACGCCACCGGAGCGCCGCTATCTCCCGCGGCGGTTCCGTCGGCTCCAATCTCTCCGATCTGGCTCAGAAATCAGGGGCGATGGACGATTAA

Coding sequence (CDS)

ATGGATTCAATCAGAGCAGAGCCGAAACAAACGAAGACGAATTGCAAGACACCGACCTCGAAATCCGCGGTGGCGGAATCGGAACTCGACGATCTGAAGAAGACTGCGCATATGCTAATGTCTCCGACGGCGTTGTCGAGGATGACGAAGTCGCCGAGCGTTAAATTGAATTGCCTCTGTTCTCCGACCACTCACATTGGATCTTTCCGGTGCCGACGCCACCGGAGCGCCGCTATCTCCCGCGGCGGTTCCGTCGGCTCCAATCTCTCCGATCTGGCTCAGAAATCAGGGGCGATGGACGATTAA

Protein sequence

MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD

Homology

[Close]

BLAST of ClCG10G004060 vs. TrEMBL
Match: A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-40
Identity = 83/101 (82.18%), Postives = 91/101 (90.10%), Query Frame = 1


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLC 60
           MD IR +PKQTKTNCKTPTSKSA+ E+E DDLKK A++LMSPTALSRMTKS S+K NCLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SPTTHIGSFRCRRHRS +ISRGGSVGSNLSDL QKS AM+D
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]

BLAST of ClCG10G004060 vs. TrEMBL
Match: W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 8   PKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLCSPTTHIG 67
           P++ K N      K  + +  L++LKK  H+L SP A   +TKS S + NCLCSPTTH G
Sbjct: 10  PQKIKEN--NMNFKLKIPDINLNELKKQTHLLASPRAQRAVTKSSSTRWNCLCSPTTHAG 69

Query: 68  SFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SFRCR HRS+ + RGGSVGSNLS+LA+K GA+ D
Sbjct: 70  SFRCRHHRSSCMLRGGSVGSNLSELARKPGAISD 101

[Close]

BLAST of ClCG10G004060 vs. TrEMBL
Match: A0A151S4K4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028449 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 7   EPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLCSPTTHI 66
           EPK  +   K   S S   E +++ LKK +HML+SPT+ S   K+ + +LNCLCSPTTH+
Sbjct: 2   EPKVEQKPPKIKLSNSP--EIDVETLKKNSHMLVSPTSQSITRKNSNGRLNCLCSPTTHV 61

Query: 67  GSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           GSFRCR HRSA + RG S+GSNL+ L  ++G++ D
Sbjct: 62  GSFRCRHHRSAVMRRGRSIGSNLAALGSEAGSISD 94

[Close]

BLAST of ClCG10G004060 vs. TrEMBL
Match: A0A072UXD4_MEDTR (PGPS/D10 protein, putative OS=Medicago truncatula GN=MTR_3g461010 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-16
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 7   EPKQTKTNCKTPTSKSAVAESELDDL---KKTAHMLMSPTALSRMT-------KSPSVKL 66
           E K  K N   P         ELD +   KK +HML+SPT+L+  T       KS S + 
Sbjct: 6   EQKPPKMNVNIP---------ELDMMNAFKKNSHMLVSPTSLASPTSLKSNPRKSSSGRW 65

Query: 67  NCLCSPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           NCLCSPTTH GSFRCR HRS+ + RGGSVGSNL+ L  K+GA+ D
Sbjct: 66  NCLCSPTTHAGSFRCRHHRSSGMIRGGSVGSNLAQLGNKAGAISD 101

[Close]

BLAST of ClCG10G004060 vs. TrEMBL
Match: V7B5G4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G085500g PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-16
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 7   EPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSV-KLNCLCSPTTH 66
           EPK  +   K   SK  + E +++ LKK +HML+SPT    + +  S  ++NCLCSPTTH
Sbjct: 2   EPKVDQKPPKIMVSK--LPELDVEILKKNSHMLVSPTTSETLNRKRSPGRMNCLCSPTTH 61

Query: 67  IGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           +GSFRCR HRS+ + RG S+GSNL++L  K+G + D
Sbjct: 62  VGSFRCRHHRSSDMRRGKSIGSNLAELGSKAGPISD 95

[Close]

BLAST of ClCG10G004060 vs. TAIR10
Match: AT5G55980.1 (AT5G55980.1 serine-rich protein-related)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 47  RMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSVGSNLSD-LAQKSGAMDD 102
           R +   S +LNCLCSPTTH GSFRCR HR  +++R GS+GSNL+  L+ KS    D
Sbjct: 53  RSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVLLSSKSSRFSD 108

[Close]

BLAST of ClCG10G004060 vs. TAIR10
Match: AT3G13227.1 (AT3G13227.1 serine-rich protein-related)

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-11
Identity = 41/85 (48.24%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 21  KSAVAESELDDLKKTAHMLMSPTALSR---------MTKSPSVKLNCLCSPTTHIGSFRC 80
           K   A+   DD+K+     MSP              M+KS SV+ NCLC+PTTH GSFRC
Sbjct: 19  KETEADVSQDDIKRQEAYNMSPRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRC 78

Query: 81  RRHRSAA---ISRGGSVGSNLSDLA 94
           R HR  A   +SRG SV SNLS LA
Sbjct: 79  RYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]

BLAST of ClCG10G004060 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.3e-07
Identity = 25/41 (60.98%), Postives = 26/41 (63.41%), Query Frame = 1


Query: 45 LSRMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSV 86
          LSR T     K NCLCSPTTH GSFRCR HRS ++ R  S+
Sbjct: 33 LSRQTSM--TKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

[Close]

BLAST of ClCG10G004060 vs. TAIR10
Match: AT1G24577.1 (AT1G24577.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 22/45 (48.89%), Postives = 28/45 (62.22%), Query Frame = 1


Query: 45 LSRMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSVGSNL 90
          LSR T     K  C+CSPTTH GSF+C+ HR+ ++ R  SV +N+
Sbjct: 21 LSRQTSI--TKTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNI 63

[Close]

BLAST of ClCG10G004060 vs. NCBI nr
Match: gi|700200858|gb|KGN55991.1| (hypothetical protein Csa_3G045050 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-40
Identity = 83/101 (82.18%), Postives = 91/101 (90.10%), Query Frame = 1


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLC 60
           MD IR +PKQTKTNCKTPTSKSA+ E+E DDLKK A++LMSPTALSRMTKS S+K NCLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SPTTHIGSFRCRRHRS +ISRGGSVGSNLSDL QKS AM+D
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]

BLAST of ClCG10G004060 vs. NCBI nr
Match: gi|703127862|ref|XP_010103953.1| (hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-19
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 8   PKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLCSPTTHIG 67
           P++ K N      K  + +  L++LKK  H+L SP A   +TKS S + NCLCSPTTH G
Sbjct: 10  PQKIKEN--NMNFKLKIPDINLNELKKQTHLLASPRAQRAVTKSSSTRWNCLCSPTTHAG 69

Query: 68  SFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SFRCR HRS+ + RGGSVGSNLS+LA+K GA+ D
Sbjct: 70  SFRCRHHRSSCMLRGGSVGSNLSELARKPGAISD 101

[Close]

BLAST of ClCG10G004060 vs. NCBI nr
Match: gi|1012338514|gb|KYP49765.1| (hypothetical protein KK1_028449 [Cajanus cajan])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 7   EPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLCSPTTHI 66
           EPK  +   K   S S   E +++ LKK +HML+SPT+ S   K+ + +LNCLCSPTTH+
Sbjct: 2   EPKVEQKPPKIKLSNSP--EIDVETLKKNSHMLVSPTSQSITRKNSNGRLNCLCSPTTHV 61

Query: 67  GSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           GSFRCR HRSA + RG S+GSNL+ L  ++G++ D
Sbjct: 62  GSFRCRHHRSAVMRRGRSIGSNLAALGSEAGSISD 94

[Close]

BLAST of ClCG10G004060 vs. NCBI nr
Match: gi|659126143|ref|XP_008463032.1| (PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 21  KSAVAESELDDLK-KTAHMLMSPTALSRMTKSPS-VKLNCLCSPTTHIGSFRCRRHRSAA 80
           + A+ E  L DLK    H+L+SP+  S  TK+PS  K NCLCSPTTHIGSFRCR HR A 
Sbjct: 35  RMAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 94

Query: 81  ISRGGSVGSNLSDLAQK 96
           + RGGSVGSNLSDLA+K
Sbjct: 95  MIRGGSVGSNLSDLARK 111

[Close]

BLAST of ClCG10G004060 vs. NCBI nr
Match: gi|922379672|ref|XP_013460070.1| (PGPS/D10 protein, putative [Medicago truncatula])

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-16
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 7   EPKQTKTNCKTPTSKSAVAESELDDL---KKTAHMLMSPTALSRMT-------KSPSVKL 66
           E K  K N   P         ELD +   KK +HML+SPT+L+  T       KS S + 
Sbjct: 6   EQKPPKMNVNIP---------ELDMMNAFKKNSHMLVSPTSLASPTSLKSNPRKSSSGRW 65

Query: 67  NCLCSPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           NCLCSPTTH GSFRCR HRS+ + RGGSVGSNL+ L  K+GA+ D
Sbjct: 66  NCLCSPTTHAGSFRCRHHRSSGMIRGGSVGSNLAQLGNKAGAISD 101

The following BLAST results are available for this feature:

BLAST of ClCG10G004060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7C7_CUCSA	2.5e-40	82.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1	[more]
W9SBP1_9ROSA	2.5e-19	54.26	Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1	[more]
A0A151S4K4_CAJCA	1.8e-17	50.53	Uncharacterized protein OS=Cajanus cajan GN=KK1_028449 PE=4 SV=1	[more]
A0A072UXD4_MEDTR	4.3e-16	50.48	PGPS/D10 protein, putative OS=Medicago truncatula GN=MTR_3g461010 PE=4 SV=1	[more]
V7B5G4_PHAVU	5.7e-16	47.92	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G085500g PE=4 SV=1	[more]

BLAST of ClCG10G004060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55980.1	1.7e-11	55.36	serine-rich protein-related	[more]
AT3G13227.1	2.9e-11	48.24	serine-rich protein-related	[more]
AT1G67910.1	4.3e-07	60.98	unknown protein	[more]
AT1G24577.1	6.2e-06	48.89	unknown protein	[more]

BLAST of ClCG10G004060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200858\|gb\|KGN55991.1\|	3.6e-40	82.18	hypothetical protein Csa_3G045050 [Cucumis sativus]	[more]
gi\|703127862\|ref\|XP_010103953.1\|	3.5e-19	54.26	hypothetical protein L484_020205 [Morus notabilis]	[more]
gi\|1012338514\|gb\|KYP49765.1\|	2.5e-17	50.53	hypothetical protein KK1_028449 [Cajanus cajan]	[more]
gi\|659126143\|ref\|XP_008463032.1\|	1.3e-16	63.64	PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A [Cucumi...	[more]
gi\|922379672\|ref\|XP_013460070.1\|	6.2e-16	50.48	PGPS/D10 protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009693	ethylene biosynthetic process
biological_process	GO:0008150	biological_process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G004060.1	ClCG10G004060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 28..93 score: 5.9
None	No IPR available	PANTHER	PTHR33132:SF9	SUBFAMILY NOT NAMED	coord: 28..93 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G004060	Csa3G045050	Cucumber (Chinese Long) v2	cuwcgB192
ClCG10G004060	MELO3C014070	Melon (DHL92) v3.5.1	mewcgB417
ClCG10G004060	Cla004435	Watermelon (97103) v1	wcgwmB062
ClCG10G004060	Cla97C10G188470	Watermelon (97103) v2	wcgwmbB039
ClCG10G004060	Bhi11G000330	Wax gourd	wcgwgoB088
ClCG10G004060	CSPI03G03820	Wild cucumber (PI 183967)	cpiwcgB194
ClCG10G004060	Cucsa.041740	Cucumber (Gy14) v1	cgywcgB019
ClCG10G004060	CmaCh16G009900	Cucurbita maxima (Rimu)	cmawcgB286
ClCG10G004060	CmoCh16G010300	Cucurbita moschata (Rifu)	cmowcgB277
ClCG10G004060	Lsi07G014290	Bottle gourd (USVL1VR-Ls)	lsiwcgB390
ClCG10G004060	Cp4.1LG14g08180	Cucurbita pepo (Zucchini)	cpewcgB197
ClCG10G004060	MELO3C014070.2	Melon (DHL92) v3.6.1	medwcgB404
ClCG10G004060	Carg25236	Silver-seed gourd	carwcgB0017
ClCG10G004060	CsaV3_3G003890	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G004060	Wax gourd	wcgwgoB080
ClCG10G004060	Cucumber (Gy14) v1	cgywcgB018
ClCG10G004060	Cucurbita maxima (Rimu)	cmawcgB285
ClCG10G004060	Cucurbita maxima (Rimu)	cmawcgB727
ClCG10G004060	Cucurbita maxima (Rimu)	cmawcgB730
ClCG10G004060	Cucurbita moschata (Rifu)	cmowcgB280
ClCG10G004060	Cucurbita moschata (Rifu)	cmowcgB730
ClCG10G004060	Cucurbita moschata (Rifu)	cmowcgB733
ClCG10G004060	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G004060	Wild cucumber (PI 183967)	cpiwcgB448
ClCG10G004060	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G004060	Melon (DHL92) v3.5.1	mewcgB415
ClCG10G004060	Watermelon (97103) v1	wcgwmB057
ClCG10G004060	Cucurbita pepo (Zucchini)	cpewcgB194
ClCG10G004060	Cucurbita pepo (Zucchini)	cpewcgB766
ClCG10G004060	Cucurbita pepo (Zucchini)	cpewcgB770
ClCG10G004060	Bottle gourd (USVL1VR-Ls)	lsiwcgB038
ClCG10G004060	Bottle gourd (USVL1VR-Ls)	lsiwcgB389
ClCG10G004060	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G004060	Cucumber (Gy14) v2	cgybwcgB178
ClCG10G004060	Melon (DHL92) v3.6.1	medwcgB401
ClCG10G004060	Watermelon (97103) v2	wcgwmbB038