Carg25236 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25236
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	serine-rich protein-related
Location	Cucurbita_argyrosperma_scaffold_189 : 316750 .. 317040 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGATCAGCGCGGAGCCAAAACAGGTAACGACGAATTGCAACTCGCCGACCTCGAAATCCGCGCAGCCGGAGTTGGAATTAGACGATCAGAAGAAGAACGCGCAGATGACGAGGTCGCCGAGCGCTAGATCGACCTGCCTCTGCTCTCCGACGACGCACGTTGGATCTTTCCGGTGCCGGCTTCACCGAGGCACTGCCATCTCCCGCGGCGGCTCCGAGGGATCTAACCTCTCCGATCTGGCTCAGAAATCGGCGGCGGTGGAGGATTCAATGGAAGGTGAGTAG

mRNA sequence

ATGGAACCGATCAGCGCGGAGCCAAAACAGGTAACGACGAATTGCAACTCGCCGACCTCGAAATCCGCGCAGCCGGAGTTGGAATTAGACGATCAGAAGAAGAACGCGCAGATGACGAGGTCGCCGAGCGCTAGATCGACCTGCCTCTGCTCTCCGACGACGCACGTTGGATCTTTCCGGTGCCGGCTTCACCGAGGCACTGCCATCTCCCGCGGCGGCTCCGAGGGATCTAACCTCTCCGATCTGGCTCAGAAATCGGCGGCGGTGGAGGATTCAATGGAAGGTGAGTAG

Coding sequence (CDS)

ATGGAACCGATCAGCGCGGAGCCAAAACAGGTAACGACGAATTGCAACTCGCCGACCTCGAAATCCGCGCAGCCGGAGTTGGAATTAGACGATCAGAAGAAGAACGCGCAGATGACGAGGTCGCCGAGCGCTAGATCGACCTGCCTCTGCTCTCCGACGACGCACGTTGGATCTTTCCGGTGCCGGCTTCACCGAGGCACTGCCATCTCCCGCGGCGGCTCCGAGGGATCTAACCTCTCCGATCTGGCTCAGAAATCGGCGGCGGTGGAGGATTCAATGGAAGGTGAGTAG

Protein sequence

MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARSTCLCSPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE

Homology

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 7.2e-26
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKN-----------AQMTRSPSARSTCL 60
           M+ + AEPKQ   NC +PT+KSA PEL+LD+ KK+           ++M++SPS +S CL
Sbjct: 1   MDHVGAEPKQPKMNCKTPTAKSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCL 60

Query: 61  CSPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSME 95
           CSPTTH+GSFRCR HR TAISRGGS GSNLSDLAQKSAA+EDS+E
Sbjct: 61  CSPTTHIGSFRCRRHRSTAISRGGSVGSNLSDLAQKSAAMEDSLE 105

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: KGN55991.1 (hypothetical protein Csa_3G045050 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-24
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60
           M+PI  +PKQ  TNC +PTSKSA  E E DD KKNA          +MT+S S +S CLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVED 92
           SPTTH+GSFRCR HR T+ISRGGS GSNLSDL QKS A+ED
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: XP_010064975.1 (PREDICTED: uncharacterized protein LOC104452162 [Eucalyptus grandis])

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 17  SPTSKSAQPELELDDQKKNAQMTRSPSA-------RSTCLCSPTTHVGSFRCRLHRGTAI 76
           SP  K   P+++L++  KN+  T SP A       +S CLCSPTTHVGSFRCR+HR ++I
Sbjct: 15  SPRRKFTVPKIDLEEIGKNSPFTLSPRASKAMSRSKSNCLCSPTTHVGSFRCRIHRSSSI 74

Query: 77  SRGGSEGSNLSDLAQKSAAVEDSMEGE 97
           SRG S GSNLS+L  KS+ V DS+E +
Sbjct: 75  SRGSSVGSNLSELGSKSSGVGDSVEAQ 101

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: PON86349.1 (hypothetical protein TorRG33x02_179150 [Trema orientalis])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 7   EPKQVTTNCNSPTSKSAQ---PELELDDQKKNAQ-------------MTRSPSARSTCLC 66
           + K V  + +SP  K+ +   PE+ L++ KK+               +T+S S R  CLC
Sbjct: 2   DDKVVQRSPSSPKMKNYKLNIPEINLEELKKHTHILVVSPRRVQAPAVTKSSSTRWNCLC 61

Query: 67  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE 97
           SPTTH GSFRCR HR + ++RGGS GSNLS+LA+KS A+ DS+E +
Sbjct: 62  SPTTHAGSFRCRHHRSSGMNRGGSVGSNLSELARKSGAIGDSLEAQ 107

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: PON32972.1 (hypothetical protein PanWU01x14_356530 [Parasponia andersonii])

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 25  PELELDDQKKNAQ-------------MTRSPSARSTCLCSPTTHVGSFRCRLHRGTAISR 84
           PE+ L++ KK+               +T+S S R  CLCSPTTH GSFRCR HR + ++R
Sbjct: 23  PEINLEELKKHTHILVVSPRGVQAPAVTKSSSTRWNCLCSPTTHAGSFRCRHHRSSGMNR 82

Query: 85  GGSEGSNLSDLAQKSAAVEDSMEGE 97
           G S GSNLS+LA+KS A+ DS+E +
Sbjct: 83  GSSVGSNLSELARKSGAIGDSLEAQ 107

[Close]

BLAST of Carg25236 vs. TAIR10
Match: AT5G55980.1 (serine-rich protein-related)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-09
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 18  PTSKSAQPELELDDQKKNAQMTRSPSARST---CLCSPTTHVGSFRCRLHRGTAISRGGS 77
           P+  S       D+   + +  RS S +ST   CLCSPTTH GSFRCR HR  +++R GS
Sbjct: 31  PSGSSTVESKSQDNNSPSLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGS 90

Query: 78  EGSNLSD-LAQKSAAVEDSMEGE 97
            GSNL+  L+ KS+   DS++ +
Sbjct: 91  IGSNLAVLLSSKSSRFSDSLKAQ 113

[Close]

BLAST of Carg25236 vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related)

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-08
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 39  TRSPSARSTCLCSPTTHVGSFRCRLHR---GTAISRGGSEGSNLSDLA 84
           ++S S R  CLC+PTTH GSFRCR HR   G  +SRG S  SNLS LA
Sbjct: 56  SKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]

BLAST of Carg25236 vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 45 RSTCLCSPTTHVGSFRCRLHRGTAISRGGS-EGSNLSDLAQKSA 88
          ++ CLCSPTTH GSFRCR+HR  ++ R  S E ++L D   K A
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPA 84

[Close]

BLAST of Carg25236 vs. TAIR10
Match: AT3G56500.1 (serine-rich protein-related)

HSP 1 Score: 44.3 bits (103), Expect = 5.0e-05
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 45 RSTCLCSPTTHVGSFRCRLHRGTAISRGGS 75
          ++ C+C+PT H GSFRCRLHR +A S G +
Sbjct: 62 KTVCICAPTKHEGSFRCRLHRSSATSHGAA 91

[Close]

BLAST of Carg25236 vs. TAIR10
Match: AT1G24577.1 (unknown protein)

HSP 1 Score: 43.5 bits (101), Expect = 8.5e-05
Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 45 RSTCLCSPTTHVGSFRCRLHRGTAISRGGSEGSNL 80
          ++ C+CSPTTH GSF+C+LHR  ++ R  S  +N+
Sbjct: 29 KTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNI 63

[Close]

BLAST of Carg25236 vs. TrEMBL
Match: tr|A0A0A0L7C7|A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-24
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60
           M+PI  +PKQ  TNC +PTSKSA  E E DD KKNA          +MT+S S +S CLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVED 92
           SPTTH+GSFRCR HR T+ISRGGS GSNLSDL QKS A+ED
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]

BLAST of Carg25236 vs. TrEMBL
Match: tr|A0A2P5ELH4|A0A2P5ELH4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_179150 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.7e-12
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 7   EPKQVTTNCNSPTSKSAQ---PELELDDQKKNAQ-------------MTRSPSARSTCLC 66
           + K V  + +SP  K+ +   PE+ L++ KK+               +T+S S R  CLC
Sbjct: 2   DDKVVQRSPSSPKMKNYKLNIPEINLEELKKHTHILVVSPRRVQAPAVTKSSSTRWNCLC 61

Query: 67  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE 97
           SPTTH GSFRCR HR + ++RGGS GSNLS+LA+KS A+ DS+E +
Sbjct: 62  SPTTHAGSFRCRHHRSSGMNRGGSVGSNLSELARKSGAIGDSLEAQ 107

[Close]

BLAST of Carg25236 vs. TrEMBL
Match: tr|A0A2P5A8U7|A0A2P5A8U7_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 25  PELELDDQKKNAQ-------------MTRSPSARSTCLCSPTTHVGSFRCRLHRGTAISR 84
           PE+ L++ KK+               +T+S S R  CLCSPTTH GSFRCR HR + ++R
Sbjct: 23  PEINLEELKKHTHILVVSPRGVQAPAVTKSSSTRWNCLCSPTTHAGSFRCRHHRSSGMNR 82

Query: 85  GGSEGSNLSDLAQKSAAVEDSMEGE 97
           G S GSNLS+LA+KS A+ DS+E +
Sbjct: 83  GSSVGSNLSELARKSGAIGDSLEAQ 107

[Close]

BLAST of Carg25236 vs. TrEMBL
Match: tr|W9SBP1|W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.6e-11
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 16  NSPTSKSAQPELELDDQKKNAQM----------TRSPSARSTCLCSPTTHVGSFRCRLHR 75
           N+   K   P++ L++ KK   +          T+S S R  CLCSPTTH GSFRCR HR
Sbjct: 16  NNMNFKLKIPDINLNELKKQTHLLASPRAQRAVTKSSSTRWNCLCSPTTHAGSFRCRHHR 75

Query: 76  GTAISRGGSEGSNLSDLAQKSAAVEDSMEGE 97
            + + RGGS GSNLS+LA+K  A+ DS+E +
Sbjct: 76  SSCMLRGGSVGSNLSELARKPGAISDSLEAQ 106

[Close]

BLAST of Carg25236 vs. TrEMBL
Match: tr|A0A2K3P5S5|A0A2K3P5S5_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g007213 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 36  AQMTRSPSARSTCLCSPTTHVGSFRCRLHRGTA-ISRGGSEGSNLSDLAQKSAAVEDSME 95
           A+  ++ S RS CLCSPTTHVGSFRCRLHR +A + RGGS GSNLS+L  K+ A+ DS+ 
Sbjct: 56  AEARKASSGRSNCLCSPTTHVGSFRCRLHRASAGLHRGGSVGSNLSELGNKAGAISDSLH 115

Query: 96  GE 97
            +
Sbjct: 116 AQ 117

The following BLAST results are available for this feature:

BLAST of Carg25236 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143490.1	7.2e-26	62.86	uncharacterized protein LOC111013367 [Momordica charantia]	[more]
KGN55991.1	3.9e-24	63.37	hypothetical protein Csa_3G045050 [Cucumis sativus]	[more]
XP_010064975.1	1.4e-13	52.87	PREDICTED: uncharacterized protein LOC104452162 [Eucalyptus grandis]	[more]
PON86349.1	1.0e-11	44.34	hypothetical protein TorRG33x02_179150 [Trema orientalis]	[more]
PON32972.1	3.8e-11	48.24	hypothetical protein PanWU01x14_356530 [Parasponia andersonii]	[more]

BLAST of Carg25236 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55980.1	1.5e-09	43.37	serine-rich protein-related	[more]
AT3G13227.1	6.3e-08	60.42	serine-rich protein-related	[more]
AT1G67910.1	1.3e-05	52.27	unknown protein	[more]
AT3G56500.1	5.0e-05	56.67	serine-rich protein-related	[more]
AT1G24577.1	8.5e-05	48.57	unknown protein	[more]

BLAST of Carg25236 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25236 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7C7\|A0A0A0L7C7_CUCSA	2.6e-24	63.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1	[more]
tr\|A0A2P5ELH4\|A0A2P5ELH4_9ROSA	6.7e-12	44.34	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_179150 PE=4 S...	[more]
tr\|A0A2P5A8U7\|A0A2P5A8U7_PARAD	2.5e-11	48.24	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356530 PE...	[more]
tr\|W9SBP1\|W9SBP1_9ROSA	5.6e-11	46.15	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1	[more]
tr\|A0A2K3P5S5\|A0A2K3P5S5_TRIPR	1.3e-10	59.68	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g007213 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25236-RA	Carg25236-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..96
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 11..89
None	No IPR available	PANTHER	PTHR33132:SF29	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 11..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25236	Cla004435	Watermelon (97103) v1	carwmB0016
Carg25236	Csa3G045050	Cucumber (Chinese Long) v2	carcuB0014
Carg25236	MELO3C014070	Melon (DHL92) v3.5.1	carmeB0015
Carg25236	ClCG10G003900	Watermelon (Charleston Gray)	carwcgB0016
Carg25236	ClCG10G004060	Watermelon (Charleston Gray)	carwcgB0017
Carg25236	CSPI03G03820	Wild cucumber (PI 183967)	carcpiB0014
Carg25236	Cucsa.041740	Cucumber (Gy14) v1	carcgyB0014
Carg25236	CmaCh16G009900	Cucurbita maxima (Rimu)	carcmaB0024
Carg25236	CmoCh16G010300	Cucurbita moschata (Rifu)	carcmoB0025
Carg25236	Lsi07G014290	Bottle gourd (USVL1VR-Ls)	carlsiB013
Carg25236	Cp4.1LG14g08180	Cucurbita pepo (Zucchini)	carcpeB0028
Carg25236	MELO3C014070.2	Melon (DHL92) v3.6.1	carmedB0016
Carg25236	CsaV3_3G003890	Cucumber (Chinese Long) v3	carcucB0014
Carg25236	Cla97C10G188470	Watermelon (97103) v2	carwmbB0013
Carg25236	Bhi11G000330	Wax gourd	carwgoB0016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None