ClCG09G017700 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G017700
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr09 : 34671848 .. 34672084 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGCCTTGTAGACCTCTGGACTTCCGAGCAGGCAAAACTCCGCCGCGAAGGTGGCTCCTTCCCCACCGCTGCCGCCGCTGACGGCCCGGTTCGAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACCGAGTTAACTCGGGTTTGGGACCGAGTCAGACGACTCGTTCCCAATGGGAAGATGTATTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATACGAGTCCATAG

mRNA sequence

ATGTCTGGCCTTGTAGACCTCTGGACTTCCGAGCAGGCAAAACTCCGCCGCGAAGGTGGCTCCTTCCCCACCGCTGCCGCCGCTGACGGCCCGGTTCGAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACCGAGTTAACTCGGGTTTGGGACCGAGTCAGACGACTCGTTCCCAATGGGAAGATGTATTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATACGAGTCCATAG

Coding sequence (CDS)

ATGTCTGGCCTTGTAGACCTCTGGACTTCCGAGCAGGCAAAACTCCGCCGCGAAGGTGGCTCCTTCCCCACCGCTGCCGCCGCTGACGGCCCGGTTCGAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACCGAGTTAACTCGGGTTTGGGACCGAGTCAGACGACTCGTTCCCAATGGGAAGATGTATTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATACGAGTCCATAG

Protein sequence

MSGLVDLWTSEQAKLRREGGSFPTAAAADGPVRAAVAEEGRWNFTELTRVWDRVRRLVPNGKMYSEASVSMLVEYTSP
Homology
[Close]
BLAST of ClCG09G017700 vs. TrEMBL
Match: A0A0A0LIK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237730 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 58/78 (74.36%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 1  MSGLVDLWTSEQAKLRREGGSFPTAAAADGPVRAAVAEEGRWNFTELTRVWDRVRRLVPN 60
          MSGLVDLWTSEQAKLR EGGS P A   D      VAE+GRWN TELTRVWDRVRRL  N
Sbjct: 1  MSGLVDLWTSEQAKLRHEGGSSPAAPTVD------VAEQGRWNSTELTRVWDRVRRLGMN 60

Query: 61 GKMYSEASVSMLVEYTSP 79
          GKM SEASV MLVE+ SP
Sbjct: 61 GKMCSEASVCMLVEFMSP 72

[Close]
BLAST of ClCG09G017700 vs. NCBI nr
Match: gi|700206636|gb|KGN61755.1| (hypothetical protein Csa_2G237730 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-21
Identity = 58/78 (74.36%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 1  MSGLVDLWTSEQAKLRREGGSFPTAAAADGPVRAAVAEEGRWNFTELTRVWDRVRRLVPN 60
          MSGLVDLWTSEQAKLR EGGS P A   D      VAE+GRWN TELTRVWDRVRRL  N
Sbjct: 1  MSGLVDLWTSEQAKLRHEGGSSPAAPTVD------VAEQGRWNSTELTRVWDRVRRLGMN 60

Query: 61 GKMYSEASVSMLVEYTSP 79
          GKM SEASV MLVE+ SP
Sbjct: 61 GKMCSEASVCMLVEFMSP 72

The following BLAST results are available for this feature:
BLAST of ClCG09G017700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIK6_CUCSA1.2e-2174.36Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237730 PE=4 SV=1[more]
BLAST of ClCG09G017700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206636|gb|KGN61755.1|1.7e-2174.36hypothetical protein Csa_2G237730 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G017700.1ClCG09G017700.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38222FAMILY NOT NAMEDcoord: 2..78
score: 3.5
NoneNo IPR availablePANTHERPTHR38222:SF1SUBFAMILY NOT NAMEDcoord: 2..78
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G017700Csa2G237730Cucumber (Chinese Long) v2cuwcgB091
ClCG09G017700MELO3C021932Melon (DHL92) v3.5.1mewcgB076
ClCG09G017700Cla010283Watermelon (97103) v1wcgwmB008
ClCG09G017700Bhi10G001674Wax gourdwcgwgoB056
ClCG09G017700Lsi10G003250Bottle gourd (USVL1VR-Ls)lsiwcgB034
ClCG09G017700MELO3C021932.2Melon (DHL92) v3.6.1medwcgB074
ClCG09G017700CsaV3_2G014310Cucumber (Chinese Long) v3cucwcgB105
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G017700Watermelon (Charleston Gray)wcgwcgB013
ClCG09G017700Watermelon (Charleston Gray)wcgwcgB017
ClCG09G017700Cucumber (Gy14) v1cgywcgB132
ClCG09G017700Cucumber (Gy14) v1cgywcgB154
ClCG09G017700Cucurbita maxima (Rimu)cmawcgB081
ClCG09G017700Cucurbita maxima (Rimu)cmawcgB474
ClCG09G017700Cucurbita maxima (Rimu)cmawcgB510
ClCG09G017700Cucurbita moschata (Rifu)cmowcgB076
ClCG09G017700Cucurbita moschata (Rifu)cmowcgB472
ClCG09G017700Cucurbita moschata (Rifu)cmowcgB507
ClCG09G017700Wild cucumber (PI 183967)cpiwcgB097
ClCG09G017700Wild cucumber (PI 183967)cpiwcgB442
ClCG09G017700Wild cucumber (PI 183967)cpiwcgB552
ClCG09G017700Cucumber (Chinese Long) v2cuwcgB420
ClCG09G017700Melon (DHL92) v3.5.1mewcgB506
ClCG09G017700Watermelon (97103) v1wcgwmB033
ClCG09G017700Cucurbita pepo (Zucchini)cpewcgB246
ClCG09G017700Cucurbita pepo (Zucchini)cpewcgB626
ClCG09G017700Bottle gourd (USVL1VR-Ls)lsiwcgB075
ClCG09G017700Cucumber (Gy14) v2cgybwcgB089
ClCG09G017700Cucumber (Gy14) v2cgybwcgB390
ClCG09G017700Cucumber (Gy14) v2cgybwcgB483
ClCG09G017700Melon (DHL92) v3.6.1medwcgB181
ClCG09G017700Melon (DHL92) v3.6.1medwcgB500
ClCG09G017700Silver-seed gourdcarwcgB0769
ClCG09G017700Silver-seed gourdcarwcgB0865
ClCG09G017700Cucumber (Chinese Long) v3cucwcgB443
ClCG09G017700Watermelon (97103) v2wcgwmbB004
ClCG09G017700Watermelon (97103) v2wcgwmbB015
ClCG09G017700Watermelon (97103) v2wcgwmbB035
ClCG09G017700Wax gourdwcgwgoB041