ClCG09G016310 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G016310
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Descriptionglycine-rich protein LENGTH=162
LocationCG_Chr09 : 32120503 .. 32120919 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATTATTGGTGGAGGTATTGGTATTGGCGTTGAGCTTCCCGGTATAGGTGGCGGAGGCATCGGCATCGGGGGTGGCATCAACATCGGTATTGGCGGTACCGGCGATAACAGTGGTAGCGGCGGTAGTGGCGCATCCCCATGGGTTCAAATTTTCGATGTAGACAGCCCCATAGTTCAAGAAGTTGCAAGGTTTTCAGTGGAACGTTTCAACCTGGACCATAATAATACACTCAGGTACCAACACGTTTATGAAGGTTGGGTTCAGTTCGTGGATGAAAACACCAAAAGGTATCGTCTCAAATTAACAGTCCTAGACTGTTTGGAACGTTTGCTCAGGTTTGAGGTTATTGTGTGTGAAGTAACAAATGGCGATGACAAGTATAAACTTGAATCCTTCGTGCAAATCCACTAA

mRNA sequence

ATGAGTATTATTGGTGGAGGTATTGGTATTGGCGTTGAGCTTCCCGGTATAGGTGGCGGAGGCATCGGCATCGGGGGTGGCATCAACATCGGTATTGGCGGTACCGGCGATAACAGTGGTAGCGGCGGTAGTGGCGCATCCCCATGGGTTCAAATTTTCGATGTAGACAGCCCCATAGTTCAAGAAGTTGCAAGGTTTTCAGTGGAACGTTTCAACCTGGACCATAATAATACACTCAGGTACCAACACGTTTATGAAGGTTGGGTTCAGTTCGTGGATGAAAACACCAAAAGGTATCGTCTCAAATTAACAGTCCTAGACTGTTTGGAACGTTTGCTCAGGTTTGAGGTTATTGTGTGTGAAGTAACAAATGGCGATGACAAGTATAAACTTGAATCCTTCGTGCAAATCCACTAA

Coding sequence (CDS)

ATGAGTATTATTGGTGGAGGTATTGGTATTGGCGTTGAGCTTCCCGGTATAGGTGGCGGAGGCATCGGCATCGGGGGTGGCATCAACATCGGTATTGGCGGTACCGGCGATAACAGTGGTAGCGGCGGTAGTGGCGCATCCCCATGGGTTCAAATTTTCGATGTAGACAGCCCCATAGTTCAAGAAGTTGCAAGGTTTTCAGTGGAACGTTTCAACCTGGACCATAATAATACACTCAGGTACCAACACGTTTATGAAGGTTGGGTTCAGTTCGTGGATGAAAACACCAAAAGGTATCGTCTCAAATTAACAGTCCTAGACTGTTTGGAACGTTTGCTCAGGTTTGAGGTTATTGTGTGTGAAGTAACAAATGGCGATGACAAGTATAAACTTGAATCCTTCGTGCAAATCCACTAA

Protein sequence

MSIIGGGIGIGVELPGIGGGGIGIGGGINIGIGGTGDNSGSGGSGASPWVQIFDVDSPIVQEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDCLERLLRFEVIVCEVTNGDDKYKLESFVQIH
Homology
[Close]
BLAST of ClCG09G016310 vs. NCBI nr
Match: gi|1753099|gb|AAC12676.1| (phloem filament protein [Cucurbita maxima])

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1 

Query: 49  WVQIFDVDSPIVQEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W++I DV    VQEVA+ +VE+FN+ H ++L+Y  ++EGW   + +N  +YRL +  +D 
Sbjct: 17  WIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYDSIHEGWYCELGQNNLKYRLHIRAIDF 76

Query: 109 LERLLRFEVIVCEVTNGDDKYKLE 133
           L+R L +E +V E     +K KLE
Sbjct: 77  LQRSLLYEALVFE-----EKPKLE 95

[Close]
BLAST of ClCG09G016310 vs. NCBI nr
Match: gi|1753099|gb|AAC12676.1| (phloem filament protein [Cucurbita maxima])

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-05
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 43  GSGASPWVQIFDVDSPIVQEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLK 102
           G  +  W QI DV    +Q V +F VE+  +   ++L+++ VYEGW   +  N+ +YR  
Sbjct: 215 GKVSPGWNQIPDVKELGLQVVIKFIVEQIKIKFGDSLKFEIVYEGWYFELCPNSLKYRFH 274

Query: 103 LTVLDCLERLLRFEVIVCE 122
           + V+D L R L+FE+I+ E
Sbjct: 275 VKVIDFLGRSLKFEIIIIE 293


HSP 2 Score: 57.0 bits (136), Expect = 3.0e-05
Identity = 30/90 (33.33%), Postives = 54/90 (60.00%), Query Frame = 1 

Query: 49  WVQIFDVDSPIVQEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W+QI ++    +Q V +F VE+  +   ++L+++ VYEGW   +  N+ +YR  + V+D 
Sbjct: 417 WIQIPNLKELGLQVVIKFIVEQIKIKFGDSLKFEIVYEGWYFGLCPNSLKYRFHVKVIDF 476

Query: 109 LERLLRFEVIVCEVTNGDDK-YKLESFVQI 138
           L R L+FEV++ E      + +KL+S + I
Sbjct: 477 LGRPLKFEVVIIEEIRDHLRIWKLDSIIAI 506


HSP 3 Score: 56.6 bits (135), Expect = 4.0e-05
Identity = 21/71 (29.58%), Postives = 45/71 (63.38%), Query Frame = 1 

Query: 49  WVQIFDVDSPIVQEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W++I ++    +QEV++F+++ FN+   ++LR+  +Y+GW   + ++  ++R+ L   DC
Sbjct: 716 WIKISNLQFAFLQEVSKFALDDFNVKSGDSLRFDGIYDGWYMEMGQDNIKFRIHLRAKDC 775

Query: 109 LERLLRFEVIV 120
           L R+  +E  V
Sbjct: 776 LSRVHHYEAYV 786


HSP 4 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 49  WVQIFDVDSPIVQEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W++I +V  P+VQE+A+F+V+  N  + + L+Y  VYEGW   +  +  ++RL L   D 
Sbjct: 320 WIKIPNVQVPLVQELAKFAVDEHN-KNGDGLKYIEVYEGWFMDLGHDNIKFRLHLKAKDW 379

Query: 109 LERLLRFEVIV 120
           L R+  +E +V
Sbjct: 380 LGRIRNYEAVV 389


HSP 5 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 49  WVQIFDVDSPIVQEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W++I +V  P+VQE+A+F+V+  N  + + L+Y  VYEGW   +  +  ++RL L   D 
Sbjct: 516 WIKIPNVQVPLVQELAKFAVDEHN-KNGDGLKYIEVYEGWFMDLGHDNIKFRLHLKAKDW 575

Query: 109 LERLLRFEVIV 120
           L R+  +E +V
Sbjct: 576 LGRIRNYEAVV 585


HSP 6 Score: 51.6 bits (122), Expect = 1.3e-03
Identity = 28/89 (31.46%), Postives = 48/89 (53.93%), Query Frame = 1 

Query: 49  WVQIFDVDSPIVQEVARFSVERFNLDHNNTLRYQHVYEGWVQFVDENTKRYRLKLTVLDC 108
           W+QI ++  P  Q V  F VE+  +   + L++  +YEGW   +   + ++RL +  +D 
Sbjct: 613 WIQIPNLKEPGFQVVINFIVEQLKIILGDCLKFHSIYEGWYFELCPISLKFRLHIKAIDF 672

Query: 109 LERLLRFEVIVCEVTNGDDKYKLESFVQI 138
           L R L +E+I+ E       +KLES + I
Sbjct: 673 LGRCLNYEIIIIEEKR---IFKLESIIVI 698

The following BLAST results are available for this feature:
BLAST of ClCG09G016310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1753099|gb|AAC12676.1|2.0e-0940.48phloem filament protein [Cucurbita maxima][more]
gi|1753099|gb|AAC12676.1|3.0e-0536.71phloem filament protein [Cucurbita maxima][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009994PP1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010951 negative regulation of endopeptidase activity
biological_process GO:0010466 negative regulation of peptidase activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
molecular_function GO:0030414 peptidase inhibitor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G016310.1ClCG09G016310.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 59..133
score: 4.0
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 54..123
score: 3.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 48..134
score: 2.92

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G016310MELO3C018579Melon (DHL92) v3.5.1mewcgB176
ClCG09G016310MELO3C018579.2Melon (DHL92) v3.6.1medwcgB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G016310Silver-seed gourdcarwcgB0281
ClCG09G016310Silver-seed gourdcarwcgB0364
ClCG09G016310Silver-seed gourdcarwcgB0710
ClCG09G016310Cucumber (Chinese Long) v3cucwcgB535
ClCG09G016310Watermelon (97103) v2wcgwmbB007
ClCG09G016310Watermelon (97103) v2wcgwmbB035
ClCG09G016310Wax gourdwcgwgoB010
ClCG09G016310Wax gourdwcgwgoB033
ClCG09G016310Watermelon (Charleston Gray)wcgwcgB004
ClCG09G016310Cucumber (Gy14) v1cgywcgB391
ClCG09G016310Cucurbita maxima (Rimu)cmawcgB075
ClCG09G016310Cucurbita maxima (Rimu)cmawcgB442
ClCG09G016310Cucurbita moschata (Rifu)cmowcgB072
ClCG09G016310Cucurbita moschata (Rifu)cmowcgB441
ClCG09G016310Cucurbita moschata (Rifu)cmowcgB607
ClCG09G016310Wild cucumber (PI 183967)cpiwcgB541
ClCG09G016310Cucumber (Chinese Long) v2cuwcgB514
ClCG09G016310Watermelon (97103) v1wcgwmB009
ClCG09G016310Cucurbita pepo (Zucchini)cpewcgB218
ClCG09G016310Cucurbita pepo (Zucchini)cpewcgB578
ClCG09G016310Bottle gourd (USVL1VR-Ls)lsiwcgB215
ClCG09G016310Cucumber (Gy14) v2cgybwcgB473