ClCG08G000200 (gene) Watermelon (Charleston Gray)

NameClCG08G000200
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTy1-copia retrotransposon protein
LocationCG_Chr08 : 541727 .. 542967 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGGTATAAATATGAAGGCTTGCTAAAGGGGCTTCTAACTTGTAGATGTGGTGGAAATAGAAACTTTCTCTACAAGCACGCTGCCGCTTGTCCTAATGGGTTCAGGTAACCATGTTCTAATTTTTACTACCTTTCTATTTTAAAATTTTATCATTTTTTTTTAATTAAAACGTTTATATTAAGTTAAGGTCCATATTTATTGGATCTAATTAAATTTTTTCCCATTTTGATCCACCGCTCCTTTTTCTTCTTCATATACAATAAGTTTTTCAGAAAAATATACAAACATTTTTTCTACCAGATTTTCTTCCTCTATTTTCTTTTGACACGTTTATGAGCATAGTTTCCGATGGTTCCATTCATTCATCTAGCGAGTGAACGCTTGAGTTGGAAAATTGTGTTAACCTTGGGGAGCAATTGACATTCGCAATTTAGCACCGTGGTCGTGCTGAATTTTGCTTTCAATGTAGTGGTTCTTCCATAGCACAACAACATGACATTTGATTGCAAGAATTTGAAAGAAAAAATATATTTCTTTTATCCCTTTTCTTCCAAATGTCTATTAGAAACGATACGATCCTTCCTGATCTGTCTAAATTGGAGCCACTGGACGGATCAAACTATCGACACTGGTCTCATAAGCTCATATGATTGTCTTCGAGTAACTAGAGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGGTTGCAGATCCAACATAAGCTAGTTGGTGCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGGTGCAAAAATCAGCAAAGATAACTTGAGACACTTTGGAATCCAGGTATGGAGGAGATGATGCGGGTAGAAAAAAAAAATACATTGTTAGCAAATAACTACAGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

mRNA sequence

ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

Coding sequence (CDS)

ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

Protein sequence

MGKELSHIGSFSNAKRIDYILTSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFMFWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKYKKDLTL
BLAST of ClCG08G000200 vs. TrEMBL
Match: E5GBG5_CUCME (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.6e-25
Identity = 74/177 (41.81%), Postives = 90/177 (50.85%), Query Frame = 1

Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFKQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLF---------------------------------MFWMMDD 130
           NKT+  HLLNHM+D +FDLF                                  F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLV NVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVVEQIHEYENLVTNVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210

BLAST of ClCG08G000200 vs. NCBI nr
Match: gi|307135946|gb|ADN33807.1| (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 74/177 (41.81%), Postives = 90/177 (50.85%), Query Frame = 1

Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFKQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLF---------------------------------MFWMMDD 130
           NKT+  HLLNHM+D +FDLF                                  F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLV NVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVVEQIHEYENLVTNVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210

BLAST of ClCG08G000200 vs. NCBI nr
Match: gi|659126166|ref|XP_008463045.1| (PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-24
Identity = 73/177 (41.24%), Postives = 91/177 (51.41%), Query Frame = 1

Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLEVDYVLTTDLPTFDPPTTTSTSSDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLF---------------------------------MFWMMDD 130
           NKT+  HLLNHM+D +FDLF                                  F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFAVQKSAKEIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANVL++ MKMC+IL+AN  L KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPIVEQIHEYENLVANVLSEGMKMCKILEANILLEKFPPSWNDYRNHLKHKKKDLKL 210

BLAST of ClCG08G000200 vs. NCBI nr
Match: gi|659113205|ref|XP_008456453.1| (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 6.8e-24
Identity = 73/177 (41.24%), Postives = 90/177 (50.85%), Query Frame = 1

Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    +        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLEVDYVLTTDLPSSDPPTTTSTSSNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLF---------------------------------MFWMMDD 130
           NKT+  HLLNHM+D +FDLF                                  F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANVL++ MKMCEILQAN  L  FPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVVEQIHEYENLVANVLSEDMKMCEILQANVLLENFPPSWNDYRNHLKHKKKDLKL 210

BLAST of ClCG08G000200 vs. NCBI nr
Match: gi|659102488|ref|XP_008452160.1| (PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.9e-22
Identity = 71/177 (40.11%), Postives = 90/177 (50.85%), Query Frame = 1

Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F    ++DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLQVDYVLTTDLPSSDPPTTTSTSSDPESSTGPPTTVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLF---------------------------------MFWMMDD 130
           NKT+  HLLNHM+D +F+LF                                  F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFNLFVVQKFTKDIWSTLESQYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANV+++ MKM EILQAN  L KFPPSW+DY NHLK+ KKDL L
Sbjct: 154 KPVVEQIHEYENLVANVMSEGMKMYEILQANVLLEKFPPSWNDYCNHLKHKKKDLKL 210

BLAST of ClCG08G000200 vs. NCBI nr
Match: gi|747058586|ref|XP_011075636.1| (PREDICTED: uncharacterized protein LOC105160070 [Sesamum indicum])

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 1

Query: 57  VKYEKDNKTIHCHLLNHMNDSLFDLFM--------------------------------- 116
           +KY++DNKT+  HLLNHMN+SLFDLF+                                 
Sbjct: 79  LKYDRDNKTVRGHLLNHMNNSLFDLFVNYKSAKEIWTTMEARYGGDDAGRKKYVVGKWLQ 138

Query: 117 FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKD 146
           F M+D+K +  + +EY+NLV  VL++ MKMCEILQAN  L KFPP+WS+YRNHLK+ KKD
Sbjct: 139 FQMVDEKPIMDQIYEYENLVTEVLSEGMKMCEILQANVLLEKFPPTWSEYRNHLKHKKKD 198

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBG5_CUCME9.6e-2541.81Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135946|gb|ADN33807.1|1.4e-2441.81ty1-copia retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659126166|ref|XP_008463045.1|3.1e-2441.24PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo][more]
gi|659113205|ref|XP_008456453.1|6.8e-2441.24PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo][more]
gi|659102488|ref|XP_008452160.1|2.9e-2240.11PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo][more]
gi|747058586|ref|XP_011075636.1|3.2e-2147.97PREDICTED: uncharacterized protein LOC105160070 [Sesamum indicum][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G000200.1ClCG08G000200.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None