ClCG08G000180 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G000180
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationCG_Chr08 : 474975 .. 476124 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTACAAGATCTAAGAATGATATTCAGAAACCTAAAGTGTATGTTACTTCTTCATTGTTTATGAAAATTACAAATAGATCATCTAGTTACATTTTGATCTATGTAGATGATATAATAATCACGGGCTCTTCCACCTCAGATATTAATACACTGATTACTCAGTTAAAAGCAACTTTTTCCTTAAAGGATCTTGGCCATCTCACCTATTTTCTTGGCGGATTATTTTTGTCTCAAGAAAATTATATTTCAGATCTTCAAGCAAAGATGTCTGAAGTTGATGTCATTACTACTCCTATGATAAGTTATTTAATTTTATCAGCCACTGGAAGTGAATATCTTGAAAATCCTCATTTGTATAGAAGCATTATTGGAGCACTCCAAAATGCAAAAATTATCCCACTGGCAAGAAGTTAAGAGGATTCTTCGATATCTAAAAGAAACATCTCGATTTGGTTTAATTCTTAGGCAACCTTCAAGCTTCTCTGTTCAAGCTTTTGCTGATGCTGGCTGGGCATCAGATCCAGACGACAGGCACTCCACCTCTAGTTTATGTGTCTTTTTTGGAGGAAACTTAATCACATGGGGTTCAAAGAAACAACATACTGTTTCAAGATCAAGCACAGAAGCTGAGTTTTGATGCCTTGCAAATGCTAGTACAGAACTTATTTGGTTAAGATTCTTGTTTAAAGAACTTGGACTTCACTTGATAAACCACCAATCTTGTGGTGTGACAATCTTGCAGCTGTCCATAAATTCAATTCTTCCAAACATGTCGAATTAAACATTTATTTTGTCAGAGACTTGGTACTTCAATAGAGAATTTCAGTTCTAGCACAAGTTGCTGACATCTTTACCAAGCCTCTAGCTGCACATTCATTTGTTCCATTAAGAACTAAATCATGTGTAGTAAATGTTGCAGACATAGGCTCGAGGGGGCATTAAGGCAGCACATTAGTGTAGTCATTTCTCTCTAATTAGTTTGGTTGTTAGAAAAACATTGTTATTCTGTTTTAGAGCTACTCCTCACCTATTTAGAGAGTAGTCCCTTGATCACAATATCAATGAGAAAGTGAAGTATTCTTCTGTGATCATTCTTTGATATTTCTTCTTTTCTCGTTTACTTTTAGATAACATTCCGATCATGTGA

mRNA sequence

ATGGTTACAAGATCTAAGAATGATATTCAGAAACCTAAAGTGTATGTTACTTCTTCATTGTTTATGAAAATTACAAATAGATCATCTAGTTACATTTTGATCTATGTAGATGATATAATAATCACGGGCTCTTCCACCTCAGATATTAATACACTGATTACTCAGTTAAAAGCAACTTTTTCCTTAAAGGATCTTGGCCATCTCACCTATTTTCTTGGCGGATTATTTTTGTCTCAAGAAAATTATATTTCAGATCTTCAAGCAAAGATGTCTGAAGTTGATGTCATTACTACTCCTATGATAAATAACATTCCGATCATGTGA

Coding sequence (CDS)

ATGGTTACAAGATCTAAGAATGATATTCAGAAACCTAAAGTGTATGTTACTTCTTCATTGTTTATGAAAATTACAAATAGATCATCTAGTTACATTTTGATCTATGTAGATGATATAATAATCACGGGCTCTTCCACCTCAGATATTAATACACTGATTACTCAGTTAAAAGCAACTTTTTCCTTAAAGGATCTTGGCCATCTCACCTATTTTCTTGGCGGATTATTTTTGTCTCAAGAAAATTATATTTCAGATCTTCAAGCAAAGATGTCTGAAGTTGATGTCATTACTACTCCTATGATAAATAACATTCCGATCATGTGA

Protein sequence

MVTRSKNDIQKPKVYVTSSLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFLGGLFLSQENYISDLQAKMSEVDVITTPMINNIPIM
Homology
[Close]
BLAST of ClCG08G000180 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 1 

Query: 31  YILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFLG--------GLFLSQENY 90
           Y+L+YVDDI++TGSS + +N LI QL +TFS+KDLG + YFLG        GLFLSQ  Y
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKY 61

Query: 91  ISDL--QAKMSEVDVITTPM 101
              +   A M +   ++TP+
Sbjct: 62  AEQILNNAGMLDCKPMSTPL 81

[Close]
BLAST of ClCG08G000180 vs. TrEMBL
Match: A5BMC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041406 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-15
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 19   SLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFL------ 78
            SLF++ TN SS ++L+YVDDI++TGSS+ +I+ LI++L+  FSLKDLG L+YFL      
Sbjct: 926  SLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISRLRGLFSLKDLGELSYFLGIEVKK 985

Query: 79   ---GGLFLSQENYISDL--QAKMSEVDVITTPMINNIPI 107
               GGL LSQ+ YI DL  + KM     + TPM++ + +
Sbjct: 986  TADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGLKL 1024

[Close]
BLAST of ClCG08G000180 vs. TrEMBL
Match: A0A151TEU9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011811 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-14
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1 

Query: 18  SSLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFL----- 77
           +SL ++IT  S+  +LIYVDDII+ GS  S++ TLI++L + FSLKDLG L YFL     
Sbjct: 10  TSLLIRITPHSTLLLLIYVDDIIVIGSLASEVTTLISKLNSMFSLKDLGPLHYFLGIEIS 69

Query: 78  ----GGLFLSQENYISDL--QAKMSEVDVITTPMINNIPI 107
               GGLFLSQ  YI DL  +AKM +   + TPM++ + +
Sbjct: 70  TNNDGGLFLSQAKYICDLLHKAKMDDSKPLPTPMVSGLKL 109

[Close]
BLAST of ClCG08G000180 vs. TrEMBL
Match: A5AXT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026811 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-14
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 19  SLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFL------ 78
           SLF++ TN SS ++L+YVDDI++T SS+ +I+ LI++L   FSLKDLG L+YFL      
Sbjct: 171 SLFVRFTNCSSLFVLVYVDDIVVTRSSSQEIHELISRLSGLFSLKDLGELSYFLGIEVKK 230

Query: 79  ---GGLFLSQENYISDL--QAKMSEVDVITTPMI 102
              GGL LSQ+ YI DL  + KM     + TPM+
Sbjct: 231 TTDGGLHLSQKKYIQDLLKKTKMDGAKSLPTPML 264

[Close]
BLAST of ClCG08G000180 vs. TrEMBL
Match: A0A151QXN3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_043871 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 1 

Query: 16  VTSSLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFLG-- 75
           + +SLF+   + S+ Y+L+YVDDII+TGSS+ +++ LI+ L A FSLKDLG LTYFLG  
Sbjct: 55  IDASLFIYQKSGSTLYLLVYVDDIIVTGSSSIELSNLISTLAARFSLKDLGCLTYFLGVE 114

Query: 76  ------GLFLSQENYISDL--QAKMSEVDVITTPMINNIPIM 108
                 GLFLSQ  YI+DL  ++ M+     +TP ++  P+M
Sbjct: 115 VIPSATGLFLSQRKYITDLLQKSSMANTKSASTP-LSTSPLM 155

[Close]
BLAST of ClCG08G000180 vs. TrEMBL
Match: A0A151T9R0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_018386 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1 

Query: 18  SSLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFL----- 77
           +SLF+KIT   +  +L+YVDDII+TGSS S++ +L+T+L   F LKDLG L YFL     
Sbjct: 396 TSLFIKITQTFTLLVLVYVDDIIVTGSSKSEVVSLVTKLNYMFKLKDLGPLHYFLGIEVS 455

Query: 78  ----GGLFLSQENYISDL--QAKMSEVDVITTPMINNIPI 107
               GGL LSQ  YI DL  +AKM++     TPM++ + +
Sbjct: 456 NTTDGGLILSQAKYIRDLLHRAKMTDSKSQPTPMVSGLKL 495

[Close]
BLAST of ClCG08G000180 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-12
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 1 

Query: 31  YILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFLG--------GLFLSQENY 90
           Y+L+YVDDI++TGSS + +N LI QL +TFS+KDLG + YFLG        GLFLSQ  Y
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKY 61

Query: 91  ISDL--QAKMSEVDVITTPM 101
              +   A M +   ++TP+
Sbjct: 62  AEQILNNAGMLDCKPMSTPL 81

[Close]
BLAST of ClCG08G000180 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-08
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 1 

Query: 21  FMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFLG------- 80
           F+KIT      +L+YVDDIII  ++ + ++ L +QLK+ F L+DLG L YFLG       
Sbjct: 269 FLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSA 328

Query: 81  -GLFLSQENYISDL 87
            G+ + Q  Y  DL
Sbjct: 329 AGINICQRKYALDL 342

[Close]
BLAST of ClCG08G000180 vs. NCBI nr
Match: gi|147854093|emb|CAN83392.1| (hypothetical protein VITISV_041406 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 19   SLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFL------ 78
            SLF++ TN SS ++L+YVDDI++TGSS+ +I+ LI++L+  FSLKDLG L+YFL      
Sbjct: 926  SLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISRLRGLFSLKDLGELSYFLGIEVKK 985

Query: 79   ---GGLFLSQENYISDL--QAKMSEVDVITTPMINNIPI 107
               GGL LSQ+ YI DL  + KM     + TPM++ + +
Sbjct: 986  TADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGLKL 1024

[Close]
BLAST of ClCG08G000180 vs. NCBI nr
Match: gi|729463265|ref|XP_010525654.1| (PREDICTED: uncharacterized protein LOC104803422 [Tarenaya hassleriana])

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-14
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 18  SSLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFLG---- 77
           +SLF+ +T+ SS ++L+YVDD++ITGS +++++++IT L A FSLKDLG L+YFLG    
Sbjct: 327 TSLFILMTSTSSLFVLVYVDDLMITGSCSTEVDSVITDLGARFSLKDLGDLSYFLGVEAL 386

Query: 78  ----GLFLSQENYISDL--QAKMSEVDVITTPM 101
               GL L+Q  YI+DL  +A M++   ++TPM
Sbjct: 387 RTDRGLLLTQRKYITDLLHRANMADAKPVSTPM 419

[Close]
BLAST of ClCG08G000180 vs. NCBI nr
Match: gi|1012354378|gb|KYP65565.1| (hypothetical protein KK1_011811 [Cajanus cajan])

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-14
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1 

Query: 18  SSLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFL----- 77
           +SL ++IT  S+  +LIYVDDII+ GS  S++ TLI++L + FSLKDLG L YFL     
Sbjct: 10  TSLLIRITPHSTLLLLIYVDDIIVIGSLASEVTTLISKLNSMFSLKDLGPLHYFLGIEIS 69

Query: 78  ----GGLFLSQENYISDL--QAKMSEVDVITTPMINNIPI 107
               GGLFLSQ  YI DL  +AKM +   + TPM++ + +
Sbjct: 70  TNNDGGLFLSQAKYICDLLHKAKMDDSKPLPTPMVSGLKL 109

[Close]
BLAST of ClCG08G000180 vs. NCBI nr
Match: gi|147843193|emb|CAN78448.1| (hypothetical protein VITISV_026811 [Vitis vinifera])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 19  SLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFL------ 78
           SLF++ TN SS ++L+YVDDI++T SS+ +I+ LI++L   FSLKDLG L+YFL      
Sbjct: 171 SLFVRFTNCSSLFVLVYVDDIVVTRSSSQEIHELISRLSGLFSLKDLGELSYFLGIEVKK 230

Query: 79  ---GGLFLSQENYISDL--QAKMSEVDVITTPMI 102
              GGL LSQ+ YI DL  + KM     + TPM+
Sbjct: 231 TTDGGLHLSQKKYIQDLLKKTKMDGAKSLPTPML 264

[Close]
BLAST of ClCG08G000180 vs. NCBI nr
Match: gi|955370889|ref|XP_014623268.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Glycine max])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1 

Query: 18  SSLFMKITNRSSSYILIYVDDIIITGSSTSDINTLITQLKATFSLKDLGHLTYFLG---- 77
           +SLF+  ++ S  YIL+YVDD+I+TG++ + I + IT+L   F+LKDLG L YFLG    
Sbjct: 179 TSLFVHYSSNSIIYILVYVDDLILTGTNAAHIQSFITKLHVVFALKDLGSLHYFLGLQIH 238

Query: 78  ----GLFLSQENYISDL--QAKMSEVDVITTP 100
               GL LSQENYI D+  ++KMSE   I+TP
Sbjct: 239 RTSTGLTLSQENYIHDILCRSKMSEASSISTP 270

The following BLAST results are available for this feature:
BLAST of ClCG08G000180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
M810_ARATH4.9e-1147.50Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of ClCG08G000180 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BMC8_VITVI1.7e-1547.47Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041406 PE=4 SV=1[more]
A0A151TEU9_CAJCA4.3e-1448.00Uncharacterized protein OS=Cajanus cajan GN=KK1_011811 PE=4 SV=1[more]
A5AXT6_VITVI7.3e-1448.94Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026811 PE=4 SV=1[more]
A0A151QXN3_CAJCA2.1e-1347.06Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A0A151T9R0_CAJCA2.1e-1347.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of ClCG08G000180 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00810.12.7e-1247.50ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
AT4G23160.12.4e-0841.89 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
BLAST of ClCG08G000180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147854093|emb|CAN83392.1|2.5e-1547.47hypothetical protein VITISV_041406 [Vitis vinifera][more]
gi|729463265|ref|XP_010525654.1|6.2e-1447.31PREDICTED: uncharacterized protein LOC104803422 [Tarenaya hassleriana][more]
gi|1012354378|gb|KYP65565.1|6.2e-1448.00hypothetical protein KK1_011811 [Cajanus cajan][more]
gi|147843193|emb|CAN78448.1|1.1e-1348.94hypothetical protein VITISV_026811 [Vitis vinifera][more]
gi|955370889|ref|XP_014623268.1|1.8e-1350.00PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G000180.1ClCG08G000180.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 16..102
score: 2.2
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 19..103
score: 2.9
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 19..103
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G000180Wax gourdwcgwgoB607
ClCG08G000180Wax gourdwcgwgoB609
ClCG08G000180Cucumber (Gy14) v1cgywcgB052
ClCG08G000180Cucurbita maxima (Rimu)cmawcgB030
ClCG08G000180Cucurbita moschata (Rifu)cmowcgB027
ClCG08G000180Wild cucumber (PI 183967)cpiwcgB431
ClCG08G000180Cucumber (Chinese Long) v2cuwcgB413
ClCG08G000180Melon (DHL92) v3.5.1mewcgB037
ClCG08G000180Watermelon (97103) v1wcgwmB404
ClCG08G000180Cucurbita pepo (Zucchini)cpewcgB712
ClCG08G000180Bottle gourd (USVL1VR-Ls)lsiwcgB440
ClCG08G000180Cucumber (Gy14) v2cgybwcgB379
ClCG08G000180Melon (DHL92) v3.6.1medwcgB036
ClCG08G000180Cucumber (Chinese Long) v3cucwcgB433
ClCG08G000180Watermelon (97103) v2wcgwmbB336